Wall clock time and date at job start Sat Apr 11 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 120.00520 * 2 1 4 4 H 1.48499 * 109.47192 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46894 * 300.00384 * 3 2 1 6 6 H 1.48500 * 109.46702 * 59.99964 * 3 2 1 7 7 C 1.38799 * 119.99384 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99787 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00434 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00148 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47057 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99999 * 359.97438 * 11 10 9 13 13 N 1.34784 * 120.00131 * 180.02562 * 11 10 9 14 14 C 1.48157 * 126.40238 * 0.02562 * 13 11 10 15 15 C 1.55286 * 107.04081 * 175.07745 * 14 13 11 16 16 C 1.53746 * 101.84439 * 337.52095 * 15 14 13 17 17 H 1.09003 * 111.30879 * 281.03674 * 16 15 14 18 18 C 1.52236 * 114.74178 * 153.63855 * 16 15 14 19 19 N 1.47712 * 106.36733 * 190.43026 * 18 16 15 20 20 C 1.34777 * 119.68579 * 232.07596 * 19 18 16 21 21 O 1.21342 * 120.00169 * 171.17209 * 20 19 18 22 22 C 1.49451 * 119.99853 * 351.17828 * 20 19 18 23 23 N 1.34771 * 120.00185 * 172.96687 * 22 20 19 24 24 O 1.21349 * 120.00120 * 352.96799 * 22 20 19 25 25 C 1.46603 * 120.63606 * 52.05842 * 19 18 16 26 26 C 1.53953 * 110.57008 * 312.17820 * 25 19 18 27 27 C 1.45458 * 126.40820 * 179.71328 * 13 11 10 28 28 H 1.09000 * 109.26814 * 93.79492 * 27 13 11 29 29 H 0.97001 * 119.99683 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47091 * 299.99329 * 10 9 7 31 31 H 1.08999 * 109.47465 * 60.00175 * 10 9 7 32 32 H 1.08998 * 109.92190 * 294.42388 * 14 13 11 33 33 H 1.08998 * 109.92034 * 55.52812 * 14 13 11 34 34 H 1.08997 * 110.95844 * 95.66006 * 15 14 13 35 35 H 1.09007 * 110.95454 * 219.38290 * 15 14 13 36 36 H 1.09004 * 110.07054 * 309.64285 * 18 16 15 37 37 H 1.09001 * 110.06836 * 71.10821 * 18 16 15 38 38 H 0.97001 * 119.99802 * 0.02562 * 23 22 20 39 39 H 0.97003 * 120.00223 * 179.97438 * 23 22 20 40 40 H 1.09003 * 109.25299 * 72.45909 * 25 19 18 41 41 H 1.08991 * 109.25495 * 191.92756 * 25 19 18 42 42 H 1.09005 * 109.87926 * 170.51540 * 26 25 19 43 43 H 1.09004 * 109.87828 * 291.58818 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9870 -5.3028 0.0012 12 8 0.7907 -5.5022 0.0021 13 7 2.8437 -6.3433 0.0018 14 6 4.3232 -6.2641 0.0025 15 6 4.8566 -7.7169 0.1305 16 6 3.6563 -8.4391 0.7641 17 1 3.6002 -8.2488 1.8359 18 6 3.5789 -9.9297 0.4646 19 7 2.2522 -10.3799 0.9324 20 6 2.1606 -11.4390 1.7609 21 8 1.0974 -11.7164 2.2757 22 6 3.3686 -12.2715 2.0458 23 7 3.3137 -13.2413 2.9801 24 8 4.3990 -12.0744 1.4358 25 6 1.0339 -9.6857 0.5043 26 6 1.1942 -8.1630 0.6653 27 6 2.4887 -7.7539 0.0083 28 1 2.4632 -8.1231 -1.0169 29 1 -0.4850 0.8401 0.0004 30 1 3.1241 -3.7315 -0.8895 31 1 3.1242 -3.7315 0.8905 32 1 4.6718 -5.8214 -0.9305 33 1 4.6626 -5.6649 0.8473 34 1 5.0899 -8.1342 -0.8490 35 1 5.7262 -7.7565 0.7866 36 1 3.6756 -10.1013 -0.6075 37 1 4.3661 -10.4602 1.0003 38 1 2.4900 -13.3991 3.4674 39 1 4.0976 -13.7819 3.1647 40 1 0.8369 -9.9178 -0.5423 41 1 0.1948 -10.0246 1.1117 42 1 0.3569 -7.6501 0.1920 43 1 1.2378 -7.9048 1.7235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501265875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:44 Heat of formation + Delta-G solvation = -79.443835 kcal Electronic energy + Delta-G solvation = -27540.126440 eV Core-core repulsion = 23519.380009 eV Total energy + Delta-G solvation = -4020.746431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50241 -40.29691 -38.81328 -37.91205 -36.08407 -34.19198 -32.60156 -32.43446 -32.07669 -29.13639 -29.01477 -26.29649 -25.48674 -24.22534 -23.47544 -22.34654 -20.84745 -20.36544 -19.07889 -18.33093 -17.70395 -17.51096 -16.75987 -16.42169 -16.30863 -16.15874 -15.57684 -15.28238 -14.81336 -14.63043 -14.58443 -14.37009 -14.05786 -13.84671 -13.68029 -13.22010 -13.01982 -12.89131 -12.58271 -12.38867 -12.01476 -11.83645 -11.60378 -11.59876 -11.28924 -11.08029 -11.02138 -10.96509 -10.77628 -10.71788 -10.39693 -9.81843 -9.71553 -9.32730 -9.08208 -9.05911 -8.50741 -8.23998 -6.51016 -6.22659 -3.93127 0.96139 2.01323 2.72063 2.88382 3.03715 3.18385 3.20873 3.25093 3.30386 3.58036 3.98091 4.15909 4.19953 4.35407 4.50859 4.72347 4.83253 4.95733 5.01895 5.06446 5.12686 5.17907 5.19169 5.40676 5.47381 5.52980 5.55873 5.58364 5.61503 5.69525 5.75116 5.89981 5.97535 6.03316 6.12236 6.15146 6.23720 6.42524 6.52033 6.77125 7.30591 7.54767 7.59043 7.67360 8.34621 8.55181 9.22830 10.84839 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028416 B = 0.002233 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.133765 B =12536.288925 C =13128.670910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.147 4.147 11 C 0.551 3.449 12 O -0.512 6.512 13 N -0.619 5.619 14 C 0.104 3.896 15 C -0.118 4.118 16 C -0.124 4.124 17 H 0.090 0.910 18 C 0.088 3.912 19 N -0.579 5.579 20 C 0.503 3.497 21 O -0.522 6.522 22 C 0.516 3.484 23 N -0.820 5.820 24 O -0.513 6.513 25 C 0.112 3.888 26 C -0.134 4.134 27 C 0.137 3.863 28 H 0.064 0.936 29 H 0.268 0.732 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.415 0.585 39 H 0.411 0.589 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.416 -26.105 3.166 28.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.340 3.660 12 O -0.386 6.386 13 N -0.356 5.356 14 C -0.019 4.019 15 C -0.157 4.157 16 C -0.143 4.143 17 H 0.108 0.892 18 C -0.034 4.034 19 N -0.312 5.312 20 C 0.285 3.715 21 O -0.398 6.398 22 C 0.296 3.704 23 N -0.385 5.385 24 O -0.390 6.390 25 C -0.011 4.011 26 C -0.172 4.172 27 C 0.032 3.968 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.160 0.840 38 H 0.246 0.754 39 H 0.244 0.756 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.382 -26.068 2.927 27.859 hybrid contribution 1.964 1.122 0.258 2.277 sum 11.346 -24.946 3.185 27.589 Atomic orbital electron populations 1.70029 1.05944 1.27346 1.46939 1.24999 0.95038 0.99046 0.94555 0.86113 0.79579 0.81872 0.77909 1.19618 1.20560 1.20558 1.22894 0.94914 0.91594 1.58829 0.90903 1.85384 1.04950 0.96366 1.96704 1.23507 1.06454 0.95027 1.04745 1.20021 0.85648 0.85393 0.74979 1.90670 1.14840 1.84927 1.48207 1.48239 1.06713 1.04939 1.75691 1.22379 0.79798 0.97371 1.02395 1.22470 0.97347 0.93979 1.01884 1.22650 0.95869 0.94755 1.01075 0.89207 1.22804 0.84720 0.93807 1.02022 1.48185 1.09097 1.28465 1.45484 1.20017 0.88837 0.82335 0.80335 1.90773 1.29700 1.69932 1.49397 1.20202 0.88454 0.81524 0.80248 1.43570 1.18925 1.36053 1.40000 1.90577 1.32189 1.67023 1.49231 1.21845 0.86595 0.91788 1.00825 1.21865 0.99144 0.93734 1.02501 1.21009 0.95117 0.81697 0.98957 0.91786 0.92234 0.89341 0.89392 0.90931 0.90929 0.90026 0.89591 0.90425 0.84015 0.75447 0.75603 0.90720 0.88137 0.87475 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.00 5.41 36.01 0.19 -2.80 16 11 C 0.55 10.43 7.80 -10.98 -0.09 10.34 16 12 O -0.51 -11.38 14.03 5.56 0.08 -11.30 16 13 N -0.62 -8.76 3.29 -164.14 -0.54 -9.30 16 14 C 0.10 1.07 6.61 -1.92 -0.01 1.05 16 15 C -0.12 -0.89 6.54 -25.13 -0.16 -1.05 16 16 C -0.12 -1.12 2.82 -89.54 -0.25 -1.37 16 17 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 18 C 0.09 0.73 5.45 -3.77 -0.02 0.71 16 19 N -0.58 -5.59 3.00 -173.00 -0.52 -6.11 16 20 C 0.50 5.00 7.70 -11.58 -0.09 4.92 16 21 O -0.52 -6.24 15.84 5.50 0.09 -6.15 16 22 C 0.52 4.15 7.99 -11.59 -0.09 4.06 16 23 N -0.82 -3.72 8.86 30.90 0.27 -3.45 16 24 O -0.51 -4.90 13.96 5.50 0.08 -4.82 16 25 C 0.11 1.14 6.37 -3.49 -0.02 1.12 16 26 C -0.13 -1.67 5.11 -27.32 -0.14 -1.81 16 27 C 0.14 1.63 2.49 -68.50 -0.17 1.46 16 28 H 0.06 0.74 7.94 -51.93 -0.41 0.33 16 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 35 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 37 H 0.14 1.21 4.39 -54.78 -0.24 0.97 16 38 H 0.41 1.47 8.32 -40.82 -0.34 1.13 16 39 H 0.41 0.98 8.93 -40.82 -0.36 0.62 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.10 1.09 6.92 -51.93 -0.36 0.73 16 42 H 0.11 1.60 6.56 -51.93 -0.34 1.26 16 43 H 0.07 0.97 8.13 -51.93 -0.42 0.54 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -36.07 363.47 -8.05 -44.12 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.83 Total: 0.75 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -0.66 Total: 3.70 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.05 Total: -44.28 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: 0.24 Total: -22.27 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.07 -8.05 -44.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501265875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.325 kcal (2) G-P(sol) polarization free energy of solvation -36.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds