Wall clock time and date at job start Sat Apr 11 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 120.00520 * 2 1 4 4 H 1.48499 * 109.47192 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46894 * 300.00384 * 3 2 1 6 6 H 1.48500 * 109.46702 * 59.99964 * 3 2 1 7 7 C 1.38799 * 119.99384 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99787 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00434 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00148 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47057 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99999 * 359.97438 * 11 10 9 13 13 N 1.34784 * 120.00131 * 180.02562 * 11 10 9 14 14 C 1.48157 * 126.40238 * 0.02562 * 13 11 10 15 15 C 1.55286 * 107.04081 * 175.07745 * 14 13 11 16 16 C 1.53746 * 101.84439 * 337.52095 * 15 14 13 17 17 H 1.09003 * 111.30879 * 281.03674 * 16 15 14 18 18 C 1.52236 * 114.74178 * 153.63855 * 16 15 14 19 19 N 1.47712 * 106.36733 * 190.43026 * 18 16 15 20 20 C 1.34777 * 119.68579 * 232.07596 * 19 18 16 21 21 O 1.21342 * 120.00169 * 171.17209 * 20 19 18 22 22 C 1.49451 * 119.99853 * 351.17828 * 20 19 18 23 23 N 1.34771 * 120.00185 * 172.96687 * 22 20 19 24 24 O 1.21349 * 120.00120 * 352.96799 * 22 20 19 25 25 C 1.46603 * 120.63606 * 52.05842 * 19 18 16 26 26 C 1.53953 * 110.57008 * 312.17820 * 25 19 18 27 27 C 1.45458 * 126.40820 * 179.71328 * 13 11 10 28 28 H 1.09000 * 109.26814 * 93.79492 * 27 13 11 29 29 H 0.97001 * 119.99683 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47091 * 299.99329 * 10 9 7 31 31 H 1.08999 * 109.47465 * 60.00175 * 10 9 7 32 32 H 1.08998 * 109.92190 * 294.42388 * 14 13 11 33 33 H 1.08998 * 109.92034 * 55.52812 * 14 13 11 34 34 H 1.08997 * 110.95844 * 95.66006 * 15 14 13 35 35 H 1.09007 * 110.95454 * 219.38290 * 15 14 13 36 36 H 1.09004 * 110.07054 * 309.64285 * 18 16 15 37 37 H 1.09001 * 110.06836 * 71.10821 * 18 16 15 38 38 H 0.97001 * 119.99802 * 0.02562 * 23 22 20 39 39 H 0.97003 * 120.00223 * 179.97438 * 23 22 20 40 40 H 1.09003 * 109.25299 * 72.45909 * 25 19 18 41 41 H 1.08991 * 109.25495 * 191.92756 * 25 19 18 42 42 H 1.09005 * 109.87926 * 170.51540 * 26 25 19 43 43 H 1.09004 * 109.87828 * 291.58818 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9870 -5.3028 0.0012 12 8 0.7907 -5.5022 0.0021 13 7 2.8437 -6.3433 0.0018 14 6 4.3232 -6.2641 0.0025 15 6 4.8566 -7.7169 0.1305 16 6 3.6563 -8.4391 0.7641 17 1 3.6002 -8.2488 1.8359 18 6 3.5789 -9.9297 0.4646 19 7 2.2522 -10.3799 0.9324 20 6 2.1606 -11.4390 1.7609 21 8 1.0974 -11.7164 2.2757 22 6 3.3686 -12.2715 2.0458 23 7 3.3137 -13.2413 2.9801 24 8 4.3990 -12.0744 1.4358 25 6 1.0339 -9.6857 0.5043 26 6 1.1942 -8.1630 0.6653 27 6 2.4887 -7.7539 0.0083 28 1 2.4632 -8.1231 -1.0169 29 1 -0.4850 0.8401 0.0004 30 1 3.1241 -3.7315 -0.8895 31 1 3.1242 -3.7315 0.8905 32 1 4.6718 -5.8214 -0.9305 33 1 4.6626 -5.6649 0.8473 34 1 5.0899 -8.1342 -0.8490 35 1 5.7262 -7.7565 0.7866 36 1 3.6756 -10.1013 -0.6075 37 1 4.3661 -10.4602 1.0003 38 1 2.4900 -13.3991 3.4674 39 1 4.0976 -13.7819 3.1647 40 1 0.8369 -9.9178 -0.5423 41 1 0.1948 -10.0246 1.1117 42 1 0.3569 -7.6501 0.1920 43 1 1.2378 -7.9048 1.7235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501265875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:43 Heat of formation + Delta-G solvation = -107.941318 kcal Electronic energy + Delta-G solvation = -27541.362183 eV Core-core repulsion = 23519.380009 eV Total energy + Delta-G solvation = -4021.982174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.30508 -41.26968 -39.63879 -39.07034 -37.02060 -34.75408 -34.60067 -33.49373 -33.17703 -30.54641 -29.89416 -27.72686 -27.05944 -25.07733 -24.41889 -23.20044 -21.63555 -21.15860 -20.42049 -19.45379 -18.96706 -18.32206 -17.87135 -17.31510 -17.26219 -17.03018 -16.89503 -16.56895 -16.34546 -15.93226 -15.54416 -15.34068 -15.23143 -14.87801 -14.65974 -14.51029 -14.18048 -14.05334 -13.72899 -13.58317 -13.17664 -13.02856 -12.95558 -12.91998 -12.60395 -12.45106 -12.36283 -12.17431 -11.73889 -11.72037 -11.56173 -11.17027 -10.90950 -10.88118 -10.30614 -10.26276 -9.94148 -9.66870 -8.68881 -8.36111 -6.14450 0.26970 1.23277 1.32344 1.40698 1.44104 1.55614 1.56872 2.00530 2.10629 2.26134 2.54107 2.98128 3.16206 3.36021 3.43201 3.57712 3.68942 3.80575 3.94347 4.00385 4.19273 4.23288 4.25713 4.34498 4.40163 4.46211 4.62991 4.67196 4.75675 4.80395 4.84163 4.91643 5.06903 5.14095 5.21117 5.28702 5.40636 5.47871 5.68509 5.86806 6.10418 6.18684 6.40725 6.63614 6.99229 7.05175 7.13418 8.73407 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028416 B = 0.002233 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.133765 B =12536.288925 C =13128.670910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.082 0.918 9 S -0.150 6.150 10 C -0.119 4.119 11 C 0.546 3.454 12 O -0.558 6.558 13 N -0.612 5.612 14 C 0.090 3.910 15 C -0.104 4.104 16 C -0.111 4.111 17 H 0.079 0.921 18 C 0.093 3.907 19 N -0.581 5.581 20 C 0.499 3.501 21 O -0.548 6.548 22 C 0.520 3.480 23 N -0.798 5.798 24 O -0.528 6.528 25 C 0.121 3.879 26 C -0.127 4.127 27 C 0.125 3.875 28 H 0.076 0.924 29 H 0.271 0.729 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.150 0.850 38 H 0.422 0.578 39 H 0.425 0.575 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.002 -27.288 3.032 31.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.692 4.692 8 H 0.100 0.900 9 S 0.077 5.923 10 C -0.270 4.270 11 C 0.335 3.665 12 O -0.436 6.436 13 N -0.346 5.346 14 C -0.031 4.031 15 C -0.142 4.142 16 C -0.131 4.131 17 H 0.098 0.902 18 C -0.027 4.027 19 N -0.314 5.314 20 C 0.282 3.718 21 O -0.426 6.426 22 C 0.299 3.701 23 N -0.365 5.365 24 O -0.406 6.406 25 C -0.002 4.002 26 C -0.166 4.166 27 C 0.022 3.978 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.166 0.834 38 H 0.253 0.747 39 H 0.260 0.740 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.035 -27.315 2.811 30.396 hybrid contribution 0.863 1.340 0.334 1.629 sum 13.898 -25.975 3.145 29.627 Atomic orbital electron populations 1.70193 1.07987 1.28564 1.48041 1.26151 0.95995 1.03371 0.93737 0.84889 0.78624 0.76233 0.78099 1.17952 1.19882 1.19924 1.23215 0.95300 0.91901 1.58803 0.89961 1.85566 1.10478 0.99235 1.97015 1.23298 1.03376 0.94200 1.06173 1.19749 0.85531 0.85841 0.75414 1.90661 1.16755 1.85490 1.50695 1.48201 1.08257 1.04850 1.73301 1.22775 0.77010 0.99929 1.03370 1.22508 0.96997 0.91224 1.03454 1.22584 0.95201 0.95104 1.00181 0.90218 1.22902 0.83975 0.92842 1.03021 1.48267 1.09319 1.28384 1.45387 1.20442 0.89279 0.82386 0.79739 1.90762 1.30858 1.70637 1.50326 1.19816 0.87408 0.81951 0.80953 1.43448 1.19813 1.34740 1.38478 1.90566 1.32197 1.67723 1.50152 1.21666 0.86924 0.90059 1.01550 1.21707 0.98765 0.95237 1.00875 1.21278 0.95988 0.80553 1.00027 0.90662 0.91984 0.87640 0.87899 0.89657 0.90388 0.87967 0.87032 0.88880 0.83375 0.74666 0.73977 0.89188 0.89145 0.90514 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 2 C 0.01 0.69 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.29 9.50 67.95 0.65 -30.64 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 10 C -0.12 -4.88 5.41 71.24 0.39 -4.50 16 11 C 0.55 21.03 7.80 87.66 0.68 21.71 16 12 O -0.56 -26.08 14.03 -3.02 -0.04 -26.13 16 13 N -0.61 -16.75 3.29 -791.59 -2.60 -19.35 16 14 C 0.09 1.60 6.61 86.85 0.57 2.18 16 15 C -0.10 -1.14 6.54 31.63 0.21 -0.93 16 16 C -0.11 -1.74 2.82 -10.09 -0.03 -1.77 16 17 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 18 C 0.09 1.30 5.45 85.89 0.47 1.77 16 19 N -0.58 -10.49 3.00 -819.62 -2.46 -12.95 16 20 C 0.50 9.35 7.70 87.27 0.67 10.03 16 21 O -0.55 -12.88 15.84 -3.22 -0.05 -12.93 16 22 C 0.52 7.30 7.99 87.27 0.70 8.00 16 23 N -0.80 -5.49 8.86 -174.50 -1.55 -7.04 16 24 O -0.53 -8.67 13.96 -3.24 -0.05 -8.72 16 25 C 0.12 2.47 6.37 86.68 0.55 3.02 16 26 C -0.13 -3.30 5.11 30.21 0.15 -3.15 16 27 C 0.13 2.86 2.49 45.18 0.11 2.98 16 28 H 0.08 1.60 7.94 -2.39 -0.02 1.58 16 29 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 31 H 0.10 3.86 8.14 -2.40 -0.02 3.84 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 0.79 8.12 -2.39 -0.02 0.77 16 35 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.09 1.07 8.12 -2.38 -0.02 1.05 16 37 H 0.15 2.06 4.39 -47.48 -0.21 1.85 16 38 H 0.42 2.20 8.32 -92.71 -0.77 1.43 16 39 H 0.43 0.92 8.93 -92.71 -0.83 0.09 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.09 2.05 6.92 -2.39 -0.02 2.03 16 42 H 0.08 2.48 6.56 -2.38 -0.02 2.47 16 43 H 0.05 1.47 8.13 -2.39 -0.02 1.45 16 Total: -1.00 -81.99 363.47 -0.73 -82.72 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -0.73 Total: 14.44 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 5.59 Total: 9.85 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -6.32 Total: -95.38 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -0.14 Total: -47.78 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -81.99 -0.73 -82.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501265875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.217 kcal (2) G-P(sol) polarization free energy of solvation -81.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds