Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29937 * 125.37660 * 2 1 4 4 C 1.36071 * 108.47675 * 180.02562 * 3 2 1 5 5 C 1.47421 * 126.44773 * 180.02562 * 4 3 2 6 6 O 1.21616 * 119.99747 * 179.97438 * 5 4 3 7 7 N 1.34768 * 120.00030 * 359.97438 * 5 4 3 8 8 C 1.46501 * 119.99838 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47146 * 179.97438 * 8 7 5 10 10 H 1.08994 * 109.47540 * 64.99520 * 9 8 7 11 11 C 1.53000 * 109.47450 * 185.00007 * 9 8 7 12 12 N 1.46509 * 109.47149 * 304.99293 * 9 8 7 13 13 C 1.34774 * 120.00141 * 154.99845 * 12 9 8 14 14 O 1.21281 * 119.99588 * 0.02562 * 13 12 9 15 15 C 1.50699 * 119.99981 * 180.02562 * 13 12 9 16 16 S 1.81006 * 109.46961 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99936 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99997 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99998 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00167 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99742 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47353 * 89.99844 * 21 19 17 23 23 H 1.48500 * 109.46834 * 209.99969 * 21 19 17 24 24 H 1.48496 * 109.47138 * 329.99409 * 21 19 17 25 25 C 1.36090 * 107.09864 * 0.02562 * 4 3 2 26 26 C 1.50705 * 126.52154 * 180.26533 * 25 4 3 27 27 O 1.34045 * 125.37915 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46720 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46835 * 299.99674 * 1 2 3 30 30 H 1.08996 * 109.47039 * 59.99686 * 1 2 3 31 31 H 0.96998 * 120.00262 * 359.97438 * 7 5 4 32 32 H 1.09002 * 109.46978 * 299.99490 * 8 7 5 33 33 H 1.09004 * 109.47619 * 59.99557 * 8 7 5 34 34 H 1.08998 * 109.47600 * 59.99092 * 11 9 8 35 35 H 1.08994 * 109.47379 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.46884 * 300.00111 * 11 9 8 37 37 H 0.97002 * 119.99521 * 335.01005 * 12 9 8 38 38 H 1.08991 * 109.47113 * 300.00154 * 15 13 12 39 39 H 1.09004 * 109.46836 * 60.00231 * 15 13 12 40 40 H 0.97000 * 119.99928 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.46974 * 179.70817 * 26 25 4 42 42 H 1.09008 * 109.46703 * 299.70862 * 26 25 4 43 43 H 1.08993 * 109.47274 * 59.70438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0006 5 6 4.7440 1.5439 -0.0003 6 8 5.8605 1.0619 -0.0004 7 7 4.5878 2.8825 0.0002 8 6 5.7632 3.7571 -0.0001 9 6 5.3113 5.2188 -0.0001 10 1 4.7891 5.4378 0.9312 11 6 6.5335 6.1305 -0.1261 12 7 4.4101 5.4513 -1.1316 13 6 3.5082 6.4515 -1.0803 14 8 3.4430 7.1593 -0.0976 15 6 2.5808 6.6903 -2.2439 16 16 1.4967 8.0916 -1.8737 17 6 0.5488 8.1457 -3.3580 18 1 0.7382 7.4317 -4.1459 19 6 -0.4412 9.1057 -3.5146 20 7 -0.6717 9.9762 -2.5545 21 14 -1.4466 9.1625 -5.0880 22 1 -2.6493 8.3045 -4.9382 23 1 -1.8667 10.5613 -5.3567 24 1 -0.6229 8.6671 -6.2199 25 6 3.5660 -0.6970 -0.0015 26 6 4.7802 -1.5897 0.0032 27 8 2.2831 -1.0929 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.6973 3.2670 -0.0001 32 1 6.3617 3.5615 0.8897 33 1 6.3612 3.5620 -0.8903 34 1 7.0558 5.9116 -1.0574 35 1 6.2115 7.1718 -0.1266 36 1 7.2041 5.9576 0.7157 37 1 4.4625 4.8853 -1.9176 38 1 3.1668 6.9096 -3.1364 39 1 1.9767 5.7994 -2.4157 40 1 -1.3638 10.6469 -2.6639 41 1 4.4642 -2.6328 0.0063 42 1 5.3785 -1.3939 -0.8867 43 1 5.3760 -1.3879 0.8932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502028583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = -63.313324 kcal Electronic energy + Delta-G solvation = -26554.669355 eV Core-core repulsion = 22534.622396 eV Total energy + Delta-G solvation = -4020.046959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.76678 -40.02192 -39.16533 -36.38993 -35.24556 -33.77733 -33.40657 -32.43214 -31.46582 -30.44431 -28.60484 -27.53046 -25.80922 -25.48236 -23.46361 -21.97550 -21.54904 -20.55060 -20.34475 -18.34469 -17.78346 -17.39539 -16.59202 -16.57490 -16.14844 -15.73826 -15.16753 -14.91861 -14.80600 -14.53402 -14.46706 -14.14015 -13.82162 -13.76994 -13.31775 -13.14287 -13.08715 -13.05410 -12.92388 -12.77462 -12.71065 -12.56179 -12.05536 -11.83223 -11.54532 -11.16444 -11.06677 -11.05333 -11.02697 -10.76307 -10.43199 -9.81969 -9.49167 -9.36839 -9.07944 -9.01942 -8.98660 -8.24025 -6.50035 -6.22018 -3.92328 0.76266 1.69191 2.12443 2.79390 3.00209 3.04084 3.07382 3.21889 3.27419 3.31480 3.55999 3.69758 4.20104 4.23371 4.40353 4.48423 4.67449 4.91857 4.97920 5.04580 5.07009 5.10032 5.11108 5.13173 5.16392 5.32114 5.35386 5.44984 5.52188 5.55199 5.62382 5.65799 5.80618 5.88463 5.93887 6.03900 6.14435 6.19731 6.58634 7.05111 7.34307 7.59328 7.65750 7.88313 8.35000 8.57816 9.23455 10.85397 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002668 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.967093 B =10492.741596 C =12632.723557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.198 3.802 3 N -0.457 5.457 4 C -0.078 4.078 5 C 0.605 3.395 6 O -0.537 6.537 7 N -0.711 5.711 8 C 0.113 3.887 9 C 0.132 3.868 10 H 0.096 0.904 11 C -0.160 4.160 12 N -0.737 5.737 13 C 0.535 3.465 14 O -0.514 6.514 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.038 3.962 26 C -0.066 4.066 27 O -0.197 6.197 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.414 0.586 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.399 0.601 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.975 -23.564 4.963 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.011 4.011 3 N -0.187 5.187 4 C -0.198 4.198 5 C 0.391 3.609 6 O -0.415 6.415 7 N -0.363 5.363 8 C -0.011 4.011 9 C 0.026 3.974 10 H 0.114 0.886 11 C -0.219 4.219 12 N -0.392 5.392 13 C 0.321 3.679 14 O -0.388 6.388 15 C -0.305 4.305 16 S 0.168 5.832 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.019 4.019 26 C -0.123 4.123 27 O -0.085 6.085 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.251 0.749 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.233 0.767 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.331 -21.922 6.683 25.139 hybrid contribution -0.825 -1.444 -2.565 3.057 sum 9.505 -23.366 4.118 25.559 Atomic orbital electron populations 1.20355 0.80574 1.04908 1.05786 1.26287 0.96558 0.78028 1.00255 1.70778 1.00537 1.29945 1.17459 1.21440 0.92253 0.92214 1.13918 1.16666 0.86200 0.81750 0.76309 1.90802 1.24215 1.75434 1.51073 1.45785 1.11178 1.05266 1.74077 1.21776 0.87820 0.87932 1.03557 1.21140 0.91784 0.92594 0.91857 0.88619 1.22111 0.96762 1.00896 1.02162 1.46141 1.37582 1.35398 1.20117 1.20317 0.79756 0.79248 0.88598 1.90706 1.69302 1.45575 1.33245 1.23537 1.01268 1.06800 0.98851 1.85382 1.38875 1.33587 1.25386 1.22863 1.22222 1.20034 1.03193 0.90966 1.24986 0.96494 0.94610 0.97485 1.70015 1.31355 1.16786 1.32150 0.86175 0.79884 0.77562 0.81925 1.20268 1.20761 1.19711 1.23699 0.83991 0.94484 0.99679 1.20448 0.89430 0.96922 1.05486 1.84345 1.16288 1.38092 1.69762 0.89226 0.88039 0.87943 0.74885 0.89713 0.90514 0.92178 0.90983 0.91486 0.76746 0.89259 0.89203 0.92191 0.90302 0.88252 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 36.01 0.38 0.04 16 2 C 0.20 1.97 8.30 -13.08 -0.11 1.86 16 3 N -0.46 -5.63 11.06 -7.65 -0.08 -5.71 16 4 C -0.08 -0.95 6.99 -83.02 -0.58 -1.53 16 5 C 0.60 7.48 7.81 -12.53 -0.10 7.38 16 6 O -0.54 -7.26 15.61 5.26 0.08 -7.18 16 7 N -0.71 -7.92 5.38 -61.38 -0.33 -8.25 16 8 C 0.11 1.08 5.23 -4.04 -0.02 1.06 16 9 C 0.13 1.45 2.73 -67.93 -0.19 1.27 16 10 H 0.10 1.23 7.58 -51.93 -0.39 0.83 16 11 C -0.16 -1.63 9.48 37.16 0.35 -1.27 16 12 N -0.74 -9.37 4.52 -53.80 -0.24 -9.62 16 13 C 0.53 9.58 7.81 -10.99 -0.09 9.49 16 14 O -0.51 -11.20 15.52 5.56 0.09 -11.11 16 15 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 16 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 17 C -0.53 -15.14 9.50 30.94 0.29 -14.85 16 18 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 21 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 25 C 0.04 0.39 7.44 -35.08 -0.26 0.13 16 26 C -0.07 -0.47 9.13 36.01 0.33 -0.15 16 27 O -0.20 -1.98 10.73 6.53 0.07 -1.91 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.41 4.91 7.87 -40.82 -0.32 4.59 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.40 4.24 8.60 -40.82 -0.35 3.89 16 38 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 39 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 0.70 8.08 -51.92 -0.42 0.28 16 43 H 0.10 0.69 8.07 -51.93 -0.42 0.28 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -36.34 389.96 -7.01 -43.35 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.10 Total: 4.78 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 0.14 Total: 2.60 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.08 Total: -48.89 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.24 Total: -20.20 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.34 -7.01 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502028583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.966 kcal (2) G-P(sol) polarization free energy of solvation -36.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds