Wall clock time and date at job start Sat Apr 11 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29937 * 125.37660 * 2 1 4 4 C 1.36071 * 108.47675 * 180.02562 * 3 2 1 5 5 C 1.47421 * 126.44773 * 180.02562 * 4 3 2 6 6 O 1.21616 * 119.99747 * 179.97438 * 5 4 3 7 7 N 1.34768 * 120.00030 * 359.97438 * 5 4 3 8 8 C 1.46501 * 119.99838 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47146 * 179.97438 * 8 7 5 10 10 H 1.08994 * 109.47540 * 64.99520 * 9 8 7 11 11 C 1.53000 * 109.47450 * 185.00007 * 9 8 7 12 12 N 1.46509 * 109.47149 * 304.99293 * 9 8 7 13 13 C 1.34774 * 120.00141 * 154.99845 * 12 9 8 14 14 O 1.21281 * 119.99588 * 0.02562 * 13 12 9 15 15 C 1.50699 * 119.99981 * 180.02562 * 13 12 9 16 16 S 1.81006 * 109.46961 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99936 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99997 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99998 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00167 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99742 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47353 * 89.99844 * 21 19 17 23 23 H 1.48500 * 109.46834 * 209.99969 * 21 19 17 24 24 H 1.48496 * 109.47138 * 329.99409 * 21 19 17 25 25 C 1.36090 * 107.09864 * 0.02562 * 4 3 2 26 26 C 1.50705 * 126.52154 * 180.26533 * 25 4 3 27 27 O 1.34045 * 125.37915 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46720 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46835 * 299.99674 * 1 2 3 30 30 H 1.08996 * 109.47039 * 59.99686 * 1 2 3 31 31 H 0.96998 * 120.00262 * 359.97438 * 7 5 4 32 32 H 1.09002 * 109.46978 * 299.99490 * 8 7 5 33 33 H 1.09004 * 109.47619 * 59.99557 * 8 7 5 34 34 H 1.08998 * 109.47600 * 59.99092 * 11 9 8 35 35 H 1.08994 * 109.47379 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.46884 * 300.00111 * 11 9 8 37 37 H 0.97002 * 119.99521 * 335.01005 * 12 9 8 38 38 H 1.08991 * 109.47113 * 300.00154 * 15 13 12 39 39 H 1.09004 * 109.46836 * 60.00231 * 15 13 12 40 40 H 0.97000 * 119.99928 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.46974 * 179.70817 * 26 25 4 42 42 H 1.09008 * 109.46703 * 299.70862 * 26 25 4 43 43 H 1.08993 * 109.47274 * 59.70438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0006 5 6 4.7440 1.5439 -0.0003 6 8 5.8605 1.0619 -0.0004 7 7 4.5878 2.8825 0.0002 8 6 5.7632 3.7571 -0.0001 9 6 5.3113 5.2188 -0.0001 10 1 4.7891 5.4378 0.9312 11 6 6.5335 6.1305 -0.1261 12 7 4.4101 5.4513 -1.1316 13 6 3.5082 6.4515 -1.0803 14 8 3.4430 7.1593 -0.0976 15 6 2.5808 6.6903 -2.2439 16 16 1.4967 8.0916 -1.8737 17 6 0.5488 8.1457 -3.3580 18 1 0.7382 7.4317 -4.1459 19 6 -0.4412 9.1057 -3.5146 20 7 -0.6717 9.9762 -2.5545 21 14 -1.4466 9.1625 -5.0880 22 1 -2.6493 8.3045 -4.9382 23 1 -1.8667 10.5613 -5.3567 24 1 -0.6229 8.6671 -6.2199 25 6 3.5660 -0.6970 -0.0015 26 6 4.7802 -1.5897 0.0032 27 8 2.2831 -1.0929 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.6973 3.2670 -0.0001 32 1 6.3617 3.5615 0.8897 33 1 6.3612 3.5620 -0.8903 34 1 7.0558 5.9116 -1.0574 35 1 6.2115 7.1718 -0.1266 36 1 7.2041 5.9576 0.7157 37 1 4.4625 4.8853 -1.9176 38 1 3.1668 6.9096 -3.1364 39 1 1.9767 5.7994 -2.4157 40 1 -1.3638 10.6469 -2.6639 41 1 4.4642 -2.6328 0.0063 42 1 5.3785 -1.3939 -0.8867 43 1 5.3760 -1.3879 0.8932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502028583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:58 Heat of formation + Delta-G solvation = -92.575729 kcal Electronic energy + Delta-G solvation = -26555.938269 eV Core-core repulsion = 22534.622396 eV Total energy + Delta-G solvation = -4021.315872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -44.53412 -41.10273 -40.37010 -37.50886 -36.05219 -34.82804 -34.57667 -34.08727 -32.67708 -30.99494 -30.05359 -28.33605 -27.65248 -26.54914 -24.24531 -22.97194 -22.40764 -21.64736 -21.38108 -19.88998 -19.08595 -18.17370 -17.96613 -17.62775 -17.03320 -16.87487 -16.70624 -16.37949 -16.25669 -15.77526 -15.36956 -15.16342 -14.78199 -14.65251 -14.47963 -14.34680 -14.06628 -13.95976 -13.70372 -13.57033 -13.50583 -13.28169 -13.22486 -13.15690 -12.97361 -12.88690 -12.58840 -12.37234 -12.08184 -11.88348 -11.72014 -11.34681 -11.13802 -10.95575 -10.31661 -10.26972 -10.20405 -9.78929 -8.65315 -8.34183 -6.11687 -0.03059 0.88437 1.26874 1.41958 1.42539 1.46861 1.57322 1.60541 1.96092 2.13289 2.25338 2.29462 2.86072 2.99964 3.32241 3.50976 3.54212 3.66862 3.96778 4.03630 4.10961 4.22776 4.30780 4.32121 4.50972 4.55359 4.56881 4.62282 4.62630 4.64333 4.74153 4.78536 4.88983 4.98830 5.05409 5.17292 5.19468 5.32883 5.42326 5.45754 6.18581 6.20316 6.44851 6.49831 6.96566 7.07302 7.22017 8.74959 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002668 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.967093 B =10492.741596 C =12632.723557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.198 3.802 3 N -0.490 5.490 4 C -0.109 4.109 5 C 0.604 3.396 6 O -0.553 6.553 7 N -0.710 5.710 8 C 0.121 3.879 9 C 0.135 3.865 10 H 0.077 0.923 11 C -0.156 4.156 12 N -0.712 5.712 13 C 0.539 3.461 14 O -0.558 6.558 15 C -0.131 4.131 16 S -0.146 6.146 17 C -0.546 4.546 18 H 0.081 0.919 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.259 1.259 25 C 0.042 3.958 26 C -0.064 4.064 27 O -0.197 6.197 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.411 0.589 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.413 0.587 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.271 0.729 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.417 -25.873 3.524 28.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.011 4.011 3 N -0.220 5.220 4 C -0.228 4.228 5 C 0.390 3.610 6 O -0.432 6.432 7 N -0.361 5.361 8 C -0.002 4.002 9 C 0.031 3.969 10 H 0.096 0.904 11 C -0.214 4.214 12 N -0.367 5.367 13 C 0.325 3.675 14 O -0.436 6.436 15 C -0.282 4.282 16 S 0.081 5.919 17 C -0.694 4.694 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.183 1.183 25 C -0.015 4.015 26 C -0.121 4.121 27 O -0.085 6.085 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.246 0.754 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.249 0.751 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.813 -24.267 5.230 27.077 hybrid contribution -0.892 -0.836 -2.062 2.397 sum 9.922 -25.102 3.168 27.177 Atomic orbital electron populations 1.20594 0.77921 1.06759 1.06288 1.27109 0.97836 0.77562 0.98636 1.70753 1.00990 1.31221 1.19050 1.21563 0.92297 0.93097 1.15859 1.16746 0.86178 0.81990 0.76051 1.90781 1.24671 1.75688 1.52073 1.45815 1.11342 1.05192 1.73758 1.21789 0.87395 0.86185 1.04812 1.21224 0.91528 0.94029 0.90148 0.90441 1.22065 0.96523 0.98660 1.04170 1.45881 1.36097 1.33570 1.21112 1.19978 0.80207 0.79938 0.87355 1.90699 1.70727 1.47587 1.34584 1.23378 1.00588 1.03945 1.00318 1.85537 1.41388 1.38195 1.26776 1.23192 1.22501 1.20403 1.03284 0.90087 1.26108 0.97705 0.93959 1.01331 1.70178 1.32246 1.17681 1.34635 0.84972 0.78136 0.77803 0.77186 1.19217 1.20320 1.18314 1.24240 0.84770 0.94444 0.98067 1.20573 0.88187 0.97776 1.05514 1.84373 1.16279 1.38117 1.69733 0.86735 0.87316 0.87433 0.75363 0.88522 0.89105 0.90492 0.93854 0.89152 0.75052 0.87442 0.87497 0.91996 0.87859 0.88085 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.51 71.24 0.75 0.17 16 2 C 0.20 3.76 8.30 88.39 0.73 4.49 16 3 N -0.49 -11.90 11.06 -293.03 -3.24 -15.14 16 4 C -0.11 -2.60 6.99 40.41 0.28 -2.32 16 5 C 0.60 14.46 7.81 86.66 0.68 15.13 16 6 O -0.55 -14.28 15.61 -4.08 -0.06 -14.35 16 7 N -0.71 -15.11 5.38 -466.37 -2.51 -17.62 16 8 C 0.12 2.10 5.23 86.38 0.45 2.55 16 9 C 0.14 2.83 2.73 44.99 0.12 2.95 16 10 H 0.08 1.98 7.58 -2.39 -0.02 1.96 16 11 C -0.16 -2.91 9.48 71.98 0.68 -2.23 16 12 N -0.71 -17.25 4.52 -442.52 -2.00 -19.25 16 13 C 0.54 19.26 7.81 87.66 0.68 19.94 16 14 O -0.56 -24.97 15.52 -3.03 -0.05 -25.02 16 15 C -0.13 -5.14 6.16 71.24 0.44 -4.71 16 16 S -0.15 -8.05 20.57 -56.49 -1.16 -9.21 16 17 C -0.55 -31.07 9.50 67.95 0.65 -30.43 16 18 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 19 C 0.01 0.78 5.49 84.86 0.47 1.25 16 20 N -0.91 -55.79 13.22 21.65 0.29 -55.51 16 21 Si 1.00 43.43 29.55 68.60 2.03 45.45 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 C 0.04 0.82 7.44 25.19 0.19 1.01 16 26 C -0.06 -0.81 9.13 71.24 0.65 -0.16 16 27 O -0.20 -3.71 10.73 0.45 0.00 -3.70 16 28 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.41 9.53 7.87 -92.71 -0.73 8.80 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.41 7.89 8.60 -92.71 -0.80 7.09 16 38 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 39 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 42 H 0.10 1.28 8.08 -2.38 -0.02 1.26 16 43 H 0.10 1.27 8.07 -2.39 -0.02 1.25 16 Total: -1.00 -81.29 389.96 -0.40 -81.69 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.47 Total: 25.01 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 6.77 Total: 7.65 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -7.46 Total: -107.51 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.11 Total: -43.07 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -81.29 -0.40 -81.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502028583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.886 kcal (2) G-P(sol) polarization free energy of solvation -81.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds