Wall clock time and date at job start Sat Apr 11 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86796 * 119.99795 * 2 1 4 4 H 1.48507 * 109.47039 * 270.00496 * 3 2 1 5 5 H 1.48501 * 109.47366 * 29.99724 * 3 2 1 6 6 H 1.48489 * 109.47327 * 150.00229 * 3 2 1 7 7 C 1.38798 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99681 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00154 * 179.97438 * 7 2 1 10 10 C 1.80996 * 100.00261 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47298 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99737 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00008 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00142 * 175.29279 * 13 11 10 15 15 C 1.53004 * 113.25643 * 53.25413 * 14 13 11 16 16 C 1.53002 * 109.46760 * 67.53525 * 15 14 13 17 17 O 1.42895 * 109.46929 * 184.99869 * 16 15 14 18 18 C 1.53514 * 114.17497 * 186.20867 * 14 13 11 19 19 N 1.47485 * 87.93016 * 87.80950 * 18 14 13 20 20 C 1.46905 * 110.99308 * 138.70490 * 19 18 14 21 21 C 1.50703 * 109.46821 * 170.00024 * 20 19 18 22 22 C 1.41379 * 126.80525 * 94.99566 * 21 20 19 23 23 C 1.35450 * 103.98813 * 179.97438 * 22 21 20 24 24 O 1.34040 * 106.44507 * 0.02562 * 23 22 21 25 25 N 1.20917 * 111.56857 * 359.97438 * 24 23 22 26 26 C 1.47478 * 87.83484 * 27.01302 * 19 18 14 27 27 H 0.96994 * 120.00330 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47116 * 59.99553 * 10 9 7 29 29 H 1.09003 * 109.46645 * 299.99991 * 10 9 7 30 30 H 0.97006 * 120.00112 * 355.29497 * 13 11 10 31 31 H 1.09001 * 109.47104 * 187.53343 * 15 14 13 32 32 H 1.08998 * 109.47136 * 307.53471 * 15 14 13 33 33 H 1.09004 * 109.46875 * 305.00070 * 16 15 14 34 34 H 1.08995 * 109.46901 * 65.00134 * 16 15 14 35 35 H 0.96700 * 114.00320 * 179.97438 * 17 16 15 36 36 H 1.08996 * 113.47331 * 333.04967 * 18 14 13 37 37 H 1.08995 * 113.53114 * 202.58915 * 18 14 13 38 38 H 1.08995 * 109.47092 * 50.00627 * 20 19 18 39 39 H 1.08997 * 109.47342 * 289.99621 * 20 19 18 40 40 H 1.08006 * 128.00056 * 359.97376 * 22 21 20 41 41 H 1.07997 * 126.77336 * 179.73979 * 23 22 21 42 42 H 1.09003 * 113.47571 * 87.75948 * 26 19 18 43 43 H 1.09005 * 113.47263 * 218.21376 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2020 -0.0012 10 6 4.0868 -2.9844 -0.0009 11 6 5.5732 -3.2324 -0.0008 12 8 6.3442 -2.2961 -0.0014 13 7 6.0459 -4.4945 -0.0011 14 6 7.4869 -4.7370 -0.1051 15 6 8.3046 -3.9759 0.9403 16 6 8.0007 -4.5354 2.3316 17 8 8.6737 -3.7505 3.3180 18 6 7.8668 -6.2179 -0.2440 19 7 7.7127 -6.0654 -1.7029 20 6 8.7817 -6.7716 -2.4217 21 6 8.4609 -6.8036 -3.8938 22 6 8.9133 -5.8964 -4.8792 23 6 8.3545 -6.3526 -6.0256 24 8 7.6413 -7.4381 -5.6943 25 7 7.7124 -7.6723 -4.5101 26 6 8.0438 -4.6384 -1.5323 27 1 -0.4850 0.8400 0.0004 28 1 3.6435 -3.4317 -0.8906 29 1 3.6442 -3.4312 0.8894 30 1 5.4319 -5.2424 0.0675 31 1 9.3670 -4.0924 0.7260 32 1 8.0413 -2.9187 0.9084 33 1 6.9260 -4.5003 2.5105 34 1 8.3456 -5.5676 2.3913 35 1 8.5255 -4.0483 4.2260 36 1 7.1389 -6.8964 0.2008 37 1 8.8893 -6.4356 0.0643 38 1 8.8608 -7.7912 -2.0448 39 1 9.7277 -6.2526 -2.2672 40 1 9.5559 -5.0382 -4.7481 41 1 8.4587 -5.9234 -7.0111 42 1 9.1138 -4.4336 -1.5678 43 1 7.4660 -3.9783 -2.1793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506080847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:11 Heat of formation + Delta-G solvation = 23.321101 kcal Electronic energy + Delta-G solvation = -27136.995554 eV Core-core repulsion = 23120.705345 eV Total energy + Delta-G solvation = -4016.290209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.17300 -41.32335 -38.70311 -37.00660 -35.22846 -33.67813 -32.43290 -32.05878 -31.72248 -29.31635 -28.75218 -26.55745 -25.61889 -24.84157 -23.36381 -22.54114 -21.14391 -20.99787 -19.34047 -18.12547 -17.89132 -17.82692 -17.56089 -16.64185 -16.32091 -15.74023 -15.69756 -15.45121 -15.03646 -14.84310 -14.68254 -14.49620 -13.89355 -13.83034 -13.57836 -13.40414 -13.07054 -12.79078 -12.60776 -12.44128 -12.23171 -11.85969 -11.76219 -11.58620 -11.34231 -11.25968 -11.00657 -10.73004 -10.60122 -10.43151 -10.12605 -9.90938 -9.84862 -9.39365 -9.31766 -9.01677 -8.96279 -8.49855 -6.91027 -6.28358 -3.99999 1.25721 1.91434 2.70338 2.90711 3.00779 3.22451 3.33501 3.50685 3.56324 3.64611 3.71606 3.91034 4.09654 4.25493 4.33452 4.53707 4.70856 4.72009 4.79684 4.87242 4.95526 4.99979 5.02470 5.09449 5.10693 5.19362 5.20500 5.21571 5.31909 5.40640 5.50824 5.63210 5.68772 5.76547 5.80379 5.85396 6.02126 6.23277 6.51765 6.58962 7.49185 7.60053 7.94746 8.02188 8.42543 8.47143 9.17758 10.80966 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009886 B = 0.002977 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.535540 B = 9404.436403 C =11451.921248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.139 6.139 10 C -0.124 4.124 11 C 0.536 3.464 12 O -0.511 6.511 13 N -0.708 5.708 14 C 0.163 3.837 15 C -0.128 4.128 16 C 0.083 3.917 17 O -0.572 6.572 18 C -0.002 4.002 19 N -0.459 5.459 20 C 0.096 3.904 21 C 0.027 3.973 22 C -0.230 4.230 23 C -0.059 4.059 24 O 0.100 5.900 25 N -0.351 5.351 26 C -0.004 4.004 27 H 0.271 0.729 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.404 0.596 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.378 0.622 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.169 0.831 41 H 0.216 0.784 42 H 0.081 0.919 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.716 -16.489 -3.938 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.087 5.913 10 C -0.275 4.275 11 C 0.323 3.677 12 O -0.385 6.385 13 N -0.362 5.362 14 C 0.074 3.926 15 C -0.167 4.167 16 C 0.005 3.995 17 O -0.377 6.377 18 C -0.131 4.131 19 N -0.182 5.182 20 C -0.033 4.033 21 C -0.133 4.133 22 C -0.252 4.252 23 C -0.140 4.140 24 O 0.032 5.968 25 N -0.054 5.054 26 C -0.134 4.134 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.240 0.760 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.224 0.776 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.187 0.813 41 H 0.233 0.767 42 H 0.099 0.901 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 21.719 -15.821 -4.457 27.237 hybrid contribution -0.040 -0.096 0.536 0.546 sum 21.678 -15.917 -3.921 27.179 Atomic orbital electron populations 1.69940 1.05925 1.27760 1.48109 1.24714 0.94444 0.98957 0.93195 0.86736 0.81908 0.83292 0.79920 1.19226 1.19956 1.15892 1.22323 0.88324 0.97531 1.58728 0.89409 1.84762 1.09226 0.99883 1.97424 1.23280 0.93884 1.04459 1.05837 1.20266 0.90548 0.82060 0.74873 1.90647 1.58325 1.42218 1.47356 1.45500 1.05575 1.08355 1.76814 1.21032 0.82505 0.94460 0.94608 1.21841 0.98956 1.04350 0.91514 1.22038 0.95963 0.92899 0.88591 1.86492 1.74242 1.58426 1.18573 1.24247 1.02263 0.96527 0.90074 1.68984 1.38453 1.04457 1.06289 1.20948 0.93992 1.01312 0.87040 1.23288 0.98169 0.93779 0.98073 1.22750 1.06927 1.03649 0.91856 1.26021 0.95926 0.90271 1.01818 1.84858 1.53988 1.38349 1.19565 1.73844 1.18138 1.22983 0.90411 1.24433 1.00620 0.91206 0.97117 0.91946 0.88421 0.88563 0.76029 0.90807 0.87014 0.93471 0.94247 0.77571 0.88725 0.89604 0.88985 0.91074 0.81301 0.76719 0.90082 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.69 13.97 55.49 0.78 -25.91 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.82 27.74 -169.99 -4.71 17.10 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.23 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 9 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 10 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 11 C 0.54 9.09 7.65 -10.99 -0.08 9.01 16 12 O -0.51 -10.30 13.56 5.55 0.08 -10.23 16 13 N -0.71 -8.70 5.05 -47.35 -0.24 -8.94 16 14 C 0.16 1.70 0.76 -131.60 -0.10 1.60 16 15 C -0.13 -1.46 4.92 -26.73 -0.13 -1.60 16 16 C 0.08 0.85 6.81 37.16 0.25 1.11 16 17 O -0.57 -6.54 13.66 -35.23 -0.48 -7.02 16 18 C 0.00 -0.01 6.40 -7.54 -0.05 -0.06 16 19 N -0.46 -4.44 6.32 -246.06 -1.55 -6.00 16 20 C 0.10 0.80 5.40 -4.97 -0.03 0.77 16 21 C 0.03 0.27 6.91 -82.10 -0.57 -0.30 16 22 C -0.23 -1.87 11.12 -39.38 -0.44 -2.30 16 23 C -0.06 -0.42 12.30 29.74 0.37 -0.06 16 24 O 0.10 1.03 11.20 17.18 0.19 1.22 16 25 N -0.35 -4.22 12.07 33.42 0.40 -3.82 16 26 C 0.00 -0.04 7.10 -7.55 -0.05 -0.09 16 27 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 29 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 30 H 0.40 4.13 8.67 -40.82 -0.35 3.78 16 31 H 0.07 0.73 8.01 -51.93 -0.42 0.31 16 32 H 0.11 1.75 5.72 -51.93 -0.30 1.46 16 33 H 0.05 0.52 7.90 -51.93 -0.41 0.11 16 34 H 0.04 0.30 7.81 -51.93 -0.41 -0.10 16 35 H 0.38 2.54 9.12 45.56 0.42 2.96 16 36 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.09 0.49 7.87 -51.93 -0.41 0.08 16 38 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 39 H 0.07 0.45 7.30 -51.93 -0.38 0.07 16 40 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.22 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.08 0.68 7.28 -51.93 -0.38 0.30 16 43 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -37.11 376.90 -7.42 -44.53 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.17 Total: 4.98 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -0.39 Total: -6.10 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.61 Total: -44.67 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.21 Total: -16.02 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.11 -7.42 -44.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506080847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.848 kcal (2) G-P(sol) polarization free energy of solvation -37.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds