Wall clock time and date at job start Sat Apr 11 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86796 * 119.99795 * 2 1 4 4 H 1.48507 * 109.47039 * 270.00496 * 3 2 1 5 5 H 1.48501 * 109.47366 * 29.99724 * 3 2 1 6 6 H 1.48489 * 109.47327 * 150.00229 * 3 2 1 7 7 C 1.38798 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99681 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00154 * 179.97438 * 7 2 1 10 10 C 1.80996 * 100.00261 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47298 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99737 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00008 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00142 * 175.29279 * 13 11 10 15 15 C 1.53004 * 113.25643 * 53.25413 * 14 13 11 16 16 C 1.53002 * 109.46760 * 67.53525 * 15 14 13 17 17 O 1.42895 * 109.46929 * 184.99869 * 16 15 14 18 18 C 1.53514 * 114.17497 * 186.20867 * 14 13 11 19 19 N 1.47485 * 87.93016 * 87.80950 * 18 14 13 20 20 C 1.46905 * 110.99308 * 138.70490 * 19 18 14 21 21 C 1.50703 * 109.46821 * 170.00024 * 20 19 18 22 22 C 1.41379 * 126.80525 * 94.99566 * 21 20 19 23 23 C 1.35450 * 103.98813 * 179.97438 * 22 21 20 24 24 O 1.34040 * 106.44507 * 0.02562 * 23 22 21 25 25 N 1.20917 * 111.56857 * 359.97438 * 24 23 22 26 26 C 1.47478 * 87.83484 * 27.01302 * 19 18 14 27 27 H 0.96994 * 120.00330 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47116 * 59.99553 * 10 9 7 29 29 H 1.09003 * 109.46645 * 299.99991 * 10 9 7 30 30 H 0.97006 * 120.00112 * 355.29497 * 13 11 10 31 31 H 1.09001 * 109.47104 * 187.53343 * 15 14 13 32 32 H 1.08998 * 109.47136 * 307.53471 * 15 14 13 33 33 H 1.09004 * 109.46875 * 305.00070 * 16 15 14 34 34 H 1.08995 * 109.46901 * 65.00134 * 16 15 14 35 35 H 0.96700 * 114.00320 * 179.97438 * 17 16 15 36 36 H 1.08996 * 113.47331 * 333.04967 * 18 14 13 37 37 H 1.08995 * 113.53114 * 202.58915 * 18 14 13 38 38 H 1.08995 * 109.47092 * 50.00627 * 20 19 18 39 39 H 1.08997 * 109.47342 * 289.99621 * 20 19 18 40 40 H 1.08006 * 128.00056 * 359.97376 * 22 21 20 41 41 H 1.07997 * 126.77336 * 179.73979 * 23 22 21 42 42 H 1.09003 * 113.47571 * 87.75948 * 26 19 18 43 43 H 1.09005 * 113.47263 * 218.21376 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2020 -0.0012 10 6 4.0868 -2.9844 -0.0009 11 6 5.5732 -3.2324 -0.0008 12 8 6.3442 -2.2961 -0.0014 13 7 6.0459 -4.4945 -0.0011 14 6 7.4869 -4.7370 -0.1051 15 6 8.3046 -3.9759 0.9403 16 6 8.0007 -4.5354 2.3316 17 8 8.6737 -3.7505 3.3180 18 6 7.8668 -6.2179 -0.2440 19 7 7.7127 -6.0654 -1.7029 20 6 8.7817 -6.7716 -2.4217 21 6 8.4609 -6.8036 -3.8938 22 6 8.9133 -5.8964 -4.8792 23 6 8.3545 -6.3526 -6.0256 24 8 7.6413 -7.4381 -5.6943 25 7 7.7124 -7.6723 -4.5101 26 6 8.0438 -4.6384 -1.5323 27 1 -0.4850 0.8400 0.0004 28 1 3.6435 -3.4317 -0.8906 29 1 3.6442 -3.4312 0.8894 30 1 5.4319 -5.2424 0.0675 31 1 9.3670 -4.0924 0.7260 32 1 8.0413 -2.9187 0.9084 33 1 6.9260 -4.5003 2.5105 34 1 8.3456 -5.5676 2.3913 35 1 8.5255 -4.0483 4.2260 36 1 7.1389 -6.8964 0.2008 37 1 8.8893 -6.4356 0.0643 38 1 8.8608 -7.7912 -2.0448 39 1 9.7277 -6.2526 -2.2672 40 1 9.5559 -5.0382 -4.7481 41 1 8.4587 -5.9234 -7.0111 42 1 9.1138 -4.4336 -1.5678 43 1 7.4660 -3.9783 -2.1793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506080847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:10 Heat of formation + Delta-G solvation = -9.379492 kcal Electronic energy + Delta-G solvation = -27138.413558 eV Core-core repulsion = 23120.705345 eV Total energy + Delta-G solvation = -4017.708213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -45.85194 -42.17897 -39.92507 -37.81708 -36.02151 -34.70331 -34.62390 -32.92550 -32.51093 -30.51072 -29.69918 -27.86694 -27.25778 -25.61646 -24.01716 -23.32846 -22.30672 -21.63670 -20.35450 -19.90495 -18.74751 -18.55477 -18.36741 -17.95614 -17.30637 -17.10310 -16.63192 -16.40982 -16.35864 -16.08467 -15.76733 -15.51013 -15.11881 -14.90111 -14.69249 -14.60862 -14.17985 -13.90242 -13.58843 -13.40072 -13.34310 -13.04589 -13.02068 -12.78238 -12.69071 -12.59055 -12.31975 -12.01470 -11.87271 -11.58565 -11.18058 -11.15119 -10.95921 -10.58070 -10.55166 -10.53804 -10.17691 -9.93093 -8.99670 -8.52531 -6.23063 0.64378 0.97509 1.27799 1.30584 1.45658 1.53474 1.56833 2.15384 2.24574 2.47423 2.69968 2.85679 2.89748 3.02743 3.25033 3.35937 3.66484 3.79086 3.88457 4.07460 4.16262 4.21021 4.25440 4.27592 4.35744 4.40240 4.44503 4.45344 4.51658 4.62848 4.64775 4.66320 4.76068 4.82343 4.98499 5.14049 5.18946 5.28815 5.56550 5.69624 5.86631 6.10285 6.48294 6.90944 6.92500 7.20937 7.37499 8.60167 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009886 B = 0.002977 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.535540 B = 9404.436403 C =11451.921248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.531 4.531 8 H 0.060 0.940 9 S -0.168 6.168 10 C -0.113 4.113 11 C 0.541 3.459 12 O -0.546 6.546 13 N -0.688 5.688 14 C 0.153 3.847 15 C -0.124 4.124 16 C 0.083 3.917 17 O -0.597 6.597 18 C 0.015 3.985 19 N -0.479 5.479 20 C 0.096 3.904 21 C 0.014 3.986 22 C -0.244 4.244 23 C -0.049 4.049 24 O 0.081 5.919 25 N -0.391 5.391 26 C -0.001 4.001 27 H 0.277 0.723 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.416 0.584 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.396 0.604 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.189 0.811 41 H 0.256 0.744 42 H 0.104 0.896 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.220 -17.559 -3.877 30.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.160 1.160 7 C -0.678 4.678 8 H 0.078 0.922 9 S 0.059 5.941 10 C -0.264 4.264 11 C 0.327 3.673 12 O -0.423 6.423 13 N -0.341 5.341 14 C 0.065 3.935 15 C -0.163 4.163 16 C 0.006 3.994 17 O -0.405 6.405 18 C -0.113 4.113 19 N -0.202 5.202 20 C -0.033 4.033 21 C -0.146 4.146 22 C -0.266 4.266 23 C -0.130 4.130 24 O 0.016 5.984 25 N -0.098 5.098 26 C -0.131 4.131 27 H 0.087 0.913 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.254 0.746 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.245 0.755 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.207 0.793 41 H 0.272 0.728 42 H 0.121 0.879 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 24.217 -16.948 -4.396 29.884 hybrid contribution -0.771 0.096 0.482 0.914 sum 23.446 -16.853 -3.915 29.139 Atomic orbital electron populations 1.70021 1.07362 1.29056 1.49181 1.25582 0.95278 1.02308 0.92851 0.85854 0.80700 0.79499 0.80239 1.18676 1.18277 1.15964 1.22480 0.90473 0.96618 1.58265 0.92223 1.84634 1.06139 1.05815 1.97555 1.23273 0.96309 0.99783 1.07009 1.19816 0.89093 0.83285 0.75120 1.90655 1.58612 1.43638 1.49402 1.45270 1.07195 1.06905 1.74745 1.21207 0.80662 0.96921 0.94664 1.21759 1.00097 1.01708 0.92728 1.22085 0.95252 0.94423 0.87682 1.86442 1.74452 1.59487 1.20140 1.24277 1.04310 0.93989 0.88729 1.68947 1.39611 1.03880 1.07730 1.21068 0.94467 1.01859 0.85864 1.23793 0.97672 0.93739 0.99348 1.23112 1.07615 1.04195 0.91696 1.26830 0.94033 0.88782 1.03363 1.84800 1.54764 1.39587 1.19207 1.73835 1.19987 1.24699 0.91238 1.24401 1.01385 0.91352 0.95915 0.91348 0.87609 0.87078 0.74612 0.88914 0.91527 0.94830 0.90667 0.75460 0.87432 0.86517 0.88258 0.88656 0.79344 0.72809 0.87857 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.52 13.97 21.65 0.30 -56.22 16 2 C 0.05 2.67 5.50 84.86 0.47 3.14 16 3 Si 0.92 45.35 27.74 68.60 1.90 47.25 16 4 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 7 C -0.53 -31.29 10.04 67.95 0.68 -30.61 16 8 H 0.06 3.73 8.03 -2.91 -0.02 3.70 16 9 S -0.17 -8.53 18.55 -56.49 -1.05 -9.58 16 10 C -0.11 -4.31 6.16 71.24 0.44 -3.87 16 11 C 0.54 18.20 7.65 87.66 0.67 18.87 16 12 O -0.55 -22.22 13.56 -3.04 -0.04 -22.26 16 13 N -0.69 -15.96 5.05 -422.12 -2.13 -18.09 16 14 C 0.15 2.86 0.76 4.06 0.00 2.87 16 15 C -0.12 -2.61 4.92 30.60 0.15 -2.46 16 16 C 0.08 1.51 6.81 71.98 0.49 2.00 16 17 O -0.60 -12.61 13.66 -148.98 -2.03 -14.64 16 18 C 0.02 0.18 6.40 83.57 0.54 0.71 16 19 N -0.48 -8.05 6.32 -932.39 -5.89 -13.94 16 20 C 0.10 1.33 5.40 85.56 0.46 1.80 16 21 C 0.01 0.26 6.91 43.58 0.30 0.56 16 22 C -0.24 -3.52 11.12 22.40 0.25 -3.27 16 23 C -0.05 -0.62 12.30 67.18 0.83 0.21 16 24 O 0.08 1.62 11.20 71.64 0.80 2.43 16 25 N -0.39 -9.20 12.07 -49.55 -0.60 -9.80 16 26 C 0.00 -0.01 7.10 83.57 0.59 0.58 16 27 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 29 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 30 H 0.42 7.69 8.67 -92.70 -0.80 6.88 16 31 H 0.09 1.56 8.01 -2.39 -0.02 1.54 16 32 H 0.07 2.08 5.72 -2.39 -0.01 2.07 16 33 H 0.03 0.69 7.90 -2.38 -0.02 0.67 16 34 H 0.08 0.84 7.81 -2.39 -0.02 0.82 16 35 H 0.40 4.60 9.12 -74.06 -0.68 3.93 16 36 H 0.11 1.03 8.13 -2.39 -0.02 1.01 16 37 H 0.12 0.71 7.87 -2.39 -0.02 0.69 16 38 H 0.10 1.22 8.08 -2.39 -0.02 1.20 16 39 H 0.10 0.84 7.30 -2.39 -0.02 0.82 16 40 H 0.19 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.26 0.68 8.06 -2.91 -0.02 0.65 16 42 H 0.10 1.44 7.28 -2.39 -0.02 1.42 16 43 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -83.79 376.90 -3.32 -87.11 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -0.46 Total: 17.21 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 5.87 Total: -9.48 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -8.32 Total: -98.04 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -1.27 Total: -34.47 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.05 Total: -9.58 kcal Total: -83.79 -3.32 -87.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506080847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.728 kcal (2) G-P(sol) polarization free energy of solvation -83.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds