Wall clock time and date at job start Sat Apr 11 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00449 * 2 1 4 4 H 1.48503 * 109.47155 * 270.00597 * 3 2 1 5 5 H 1.48507 * 109.46616 * 29.99916 * 3 2 1 6 6 H 1.48496 * 109.47352 * 150.00072 * 3 2 1 7 7 C 1.38814 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00275 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99726 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99957 * 179.97438 * 9 7 2 11 11 H 1.09009 * 109.47231 * 34.99383 * 10 9 7 12 12 C 1.53004 * 109.46983 * 275.00096 * 10 9 7 13 13 O 1.42895 * 109.47033 * 294.99563 * 12 10 9 14 14 C 1.52998 * 109.47506 * 154.99771 * 10 9 7 15 15 N 1.46496 * 109.46846 * 304.99891 * 14 10 9 16 16 C 1.34777 * 119.99613 * 179.97438 * 15 14 10 17 17 O 1.21691 * 120.00306 * 0.02562 * 16 15 14 18 18 C 1.46686 * 119.99903 * 180.02562 * 16 15 14 19 19 C 1.35659 * 126.12948 * 0.03033 * 18 16 15 20 20 N 1.30944 * 114.19176 * 179.97438 * 19 18 16 21 21 C 1.29432 * 117.36137 * 359.97438 * 20 19 18 22 22 C 1.50705 * 124.80319 * 180.02562 * 21 20 19 23 23 H 1.08993 * 110.33055 * 197.22697 * 22 21 20 24 24 C 1.54479 * 110.36815 * 74.97493 * 22 21 20 25 25 C 1.54513 * 104.06197 * 217.18896 * 24 22 21 26 26 C 1.54479 * 104.06039 * 0.02562 * 25 24 22 27 27 O 1.44422 * 104.80734 * 23.97973 * 26 25 24 28 28 S 1.70946 * 110.39342 * 359.72625 * 21 20 19 29 29 H 0.96998 * 119.99600 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00134 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47380 * 55.00130 * 12 10 9 32 32 H 1.09004 * 109.47037 * 174.99865 * 12 10 9 33 33 H 0.96699 * 114.00066 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.47106 * 184.99942 * 14 10 9 35 35 H 1.08999 * 109.46731 * 64.99830 * 14 10 9 36 36 H 0.96996 * 120.00516 * 0.02562 * 15 14 10 37 37 H 1.07998 * 122.90764 * 0.02562 * 19 18 16 38 38 H 1.08993 * 110.51729 * 335.83413 * 24 22 21 39 39 H 1.08999 * 110.50842 * 98.41534 * 24 22 21 40 40 H 1.08996 * 110.51227 * 118.64670 * 25 24 22 41 41 H 1.08997 * 110.51565 * 241.22449 * 25 24 22 42 42 H 1.09004 * 110.37016 * 142.80971 * 26 25 24 43 43 H 1.08995 * 110.37718 * 265.03164 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5649 -3.2064 -0.5898 12 6 4.2576 -2.9757 1.4370 13 8 5.0736 -2.0682 2.1803 14 6 5.4995 -2.2589 -0.6091 15 7 5.3624 -1.6636 -1.9406 16 6 6.4607 -1.3854 -2.6706 17 8 7.5661 -1.6291 -2.2239 18 6 6.3235 -0.7888 -4.0036 19 6 5.1586 -0.4668 -4.6198 20 7 5.3083 0.0556 -5.8112 21 6 6.5175 0.2003 -6.2497 22 6 6.8821 0.7812 -7.5916 23 1 7.9087 0.5221 -7.8501 24 6 6.7011 2.3153 -7.5805 25 6 6.1600 2.6397 -8.9910 26 6 6.0775 1.2631 -9.6870 27 8 5.9701 0.3095 -8.6077 28 16 7.6427 -0.3532 -5.0878 29 1 -0.4849 0.8401 -0.0004 30 1 3.8646 -0.3622 0.0004 31 1 3.2733 -3.0423 1.9002 32 1 4.7234 -3.9612 1.4305 33 1 5.2086 -2.3257 3.1026 34 1 6.0109 -3.2180 -0.6908 35 1 6.0784 -1.5916 0.0294 36 1 4.4814 -1.4689 -2.2965 37 1 4.1914 -0.6266 -4.1667 38 1 5.9800 2.6094 -6.8179 39 1 7.6570 2.8114 -7.4126 40 1 5.1714 3.0940 -8.9256 41 1 6.8475 3.2981 -9.5218 42 1 5.1960 1.2134 -10.3263 43 1 6.9793 1.0782 -10.2706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507245595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:18 Heat of formation + Delta-G solvation = -64.884900 kcal Electronic energy + Delta-G solvation = -27003.391294 eV Core-core repulsion = 22983.276186 eV Total energy + Delta-G solvation = -4020.115108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.45306 -39.65318 -38.78349 -37.27616 -35.08444 -33.68757 -32.59601 -32.02379 -31.38172 -29.56332 -28.55127 -25.97244 -25.09453 -23.40103 -23.27167 -21.81899 -21.49425 -20.25736 -19.47904 -18.66546 -17.90190 -17.25182 -16.91356 -16.64096 -16.13146 -15.62436 -15.52010 -15.33908 -14.82936 -14.55236 -14.27968 -14.08775 -14.04607 -13.65511 -13.49431 -13.34391 -13.04963 -12.87493 -12.43747 -12.18227 -12.04909 -11.73496 -11.71341 -11.63337 -11.09514 -11.05944 -10.91046 -10.76085 -10.36584 -10.25668 -10.12929 -9.68048 -9.63651 -9.59175 -9.49910 -9.14348 -9.04236 -8.80561 -7.39304 -5.86035 -3.23034 0.06984 0.91911 1.46846 2.35347 3.21844 3.32837 3.37666 3.41680 3.43405 3.53181 3.76833 4.25124 4.38256 4.48177 4.52918 4.65354 4.76522 4.80280 4.86567 4.97697 5.14546 5.15410 5.19127 5.29039 5.32439 5.42747 5.43367 5.59581 5.68010 5.75424 5.85216 5.87790 5.90133 6.13847 6.33418 6.36688 6.54450 6.63969 7.49433 7.62862 7.86864 8.07585 8.25480 8.32731 9.10187 9.82769 10.02258 11.31470 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.003048 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.699868 B = 9184.151698 C =10743.512192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.013 3.987 3 Si 0.878 3.122 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.252 4.252 8 H 0.091 0.909 9 N -0.739 5.739 10 C 0.171 3.829 11 H 0.076 0.924 12 C 0.059 3.941 13 O -0.565 6.565 14 C 0.117 3.883 15 N -0.702 5.702 16 C 0.590 3.410 17 O -0.545 6.545 18 C -0.285 4.285 19 C 0.094 3.906 20 N -0.449 5.449 21 C 0.031 3.969 22 C 0.154 3.846 23 H 0.093 0.907 24 C -0.144 4.144 25 C -0.152 4.152 26 C 0.043 3.957 27 O -0.349 6.349 28 S 0.233 5.767 29 H 0.261 0.739 30 H 0.366 0.634 31 H 0.055 0.945 32 H 0.031 0.969 33 H 0.367 0.633 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.410 0.590 37 H 0.188 0.812 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.428 0.606 -15.102 22.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.184 4.184 3 Si 0.708 3.292 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.382 4.382 8 H 0.109 0.891 9 N -0.382 5.382 10 C 0.060 3.940 11 H 0.094 0.906 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.008 4.008 15 N -0.354 5.354 16 C 0.375 3.625 17 O -0.424 6.424 18 C -0.409 4.409 19 C -0.064 4.064 20 N -0.163 5.163 21 C -0.244 4.244 22 C 0.093 3.907 23 H 0.111 0.889 24 C -0.183 4.183 25 C -0.190 4.190 26 C -0.034 4.034 27 O -0.267 6.267 28 S 0.491 5.509 29 H 0.071 0.929 30 H 0.199 0.801 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.212 0.788 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.247 0.753 37 H 0.205 0.795 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.508 0.600 -15.675 23.508 hybrid contribution -0.909 1.021 0.962 1.672 sum 16.599 1.621 -14.713 22.240 Atomic orbital electron populations 1.69693 1.05123 1.26011 1.56728 1.24633 0.95134 0.97160 1.01484 0.86647 0.79602 0.85051 0.77933 1.20979 1.21701 1.19949 1.19038 0.80345 0.94722 1.44091 0.89088 1.42755 1.03929 1.01758 1.89771 1.20589 0.90291 0.90705 0.92385 0.90576 1.22988 0.93940 0.90427 0.94827 1.86519 1.72354 1.52032 1.25969 1.21693 0.98725 0.98547 0.81799 1.45800 1.08924 1.62542 1.18094 1.16664 0.85004 0.78292 0.82580 1.90822 1.25320 1.54329 1.71936 1.25909 0.97204 1.14973 1.02842 1.22410 0.99182 0.95491 0.89330 1.66042 1.22147 1.15031 1.13033 1.27136 0.92550 1.03382 1.01333 1.21386 0.93758 0.93022 0.82581 0.88949 1.23003 1.02972 0.93566 0.98788 1.22928 1.02768 0.98146 0.95146 1.23467 1.02414 0.87309 0.90249 1.89302 1.62608 1.47845 1.26963 1.83841 1.08599 1.52409 1.06022 0.92931 0.80080 0.92678 0.95042 0.78823 0.91242 0.90235 0.75298 0.79514 0.89654 0.89686 0.90138 0.90163 0.88546 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.97 55.49 0.78 -27.38 16 2 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 3 Si 0.88 21.78 27.74 -169.99 -4.71 17.07 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.27 -6.65 6.52 56.52 0.37 -6.28 16 7 C -0.25 -6.63 10.41 -15.06 -0.16 -6.78 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 N -0.74 -16.27 4.31 -53.42 -0.23 -16.50 16 10 C 0.17 3.02 2.84 -67.93 -0.19 2.83 16 11 H 0.08 1.30 8.08 -51.92 -0.42 0.88 16 12 C 0.06 0.96 6.86 37.16 0.25 1.21 16 13 O -0.57 -9.28 12.64 -35.23 -0.45 -9.72 16 14 C 0.12 1.91 5.12 -4.05 -0.02 1.89 16 15 N -0.70 -11.34 5.37 -61.62 -0.33 -11.67 16 16 C 0.59 9.85 7.79 -12.85 -0.10 9.75 16 17 O -0.54 -10.40 16.97 5.20 0.09 -10.31 16 18 C -0.28 -4.21 6.48 -37.10 -0.24 -4.45 16 19 C 0.09 1.37 10.93 -18.85 -0.21 1.17 16 20 N -0.45 -6.64 10.47 -11.50 -0.12 -6.76 16 21 C 0.03 0.39 6.24 -13.29 -0.08 0.30 16 22 C 0.15 1.50 3.81 -27.10 -0.10 1.40 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 24 C -0.14 -1.16 6.62 -25.16 -0.17 -1.32 16 25 C -0.15 -1.00 7.09 -25.16 -0.18 -1.18 16 26 C 0.04 0.31 7.63 37.93 0.29 0.60 16 27 O -0.35 -4.01 11.30 -35.23 -0.40 -4.41 16 28 S 0.23 2.81 23.01 -107.50 -2.47 0.33 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.37 8.40 5.66 -40.82 -0.23 8.17 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.37 4.25 9.12 45.56 0.42 4.67 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.45 7.39 -51.93 -0.38 1.07 16 36 H 0.41 6.49 6.85 -40.82 -0.28 6.21 16 37 H 0.19 2.53 7.15 -52.49 -0.38 2.16 16 38 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -34.93 375.57 -8.27 -43.20 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -5.08 Total: 14.81 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.00 Total: 5.68 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: 0.09 Total: -62.31 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.76 Total: -24.44 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -2.47 Total: 0.33 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.93 -8.27 -43.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507245595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.689 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds