Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00449 * 2 1 4 4 H 1.48503 * 109.47155 * 270.00597 * 3 2 1 5 5 H 1.48507 * 109.46616 * 29.99916 * 3 2 1 6 6 H 1.48496 * 109.47352 * 150.00072 * 3 2 1 7 7 C 1.38814 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00275 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99726 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99957 * 179.97438 * 9 7 2 11 11 H 1.09009 * 109.47231 * 34.99383 * 10 9 7 12 12 C 1.53004 * 109.46983 * 275.00096 * 10 9 7 13 13 O 1.42895 * 109.47033 * 294.99563 * 12 10 9 14 14 C 1.52998 * 109.47506 * 154.99771 * 10 9 7 15 15 N 1.46496 * 109.46846 * 304.99891 * 14 10 9 16 16 C 1.34777 * 119.99613 * 179.97438 * 15 14 10 17 17 O 1.21691 * 120.00306 * 0.02562 * 16 15 14 18 18 C 1.46686 * 119.99903 * 180.02562 * 16 15 14 19 19 C 1.35659 * 126.12948 * 0.03033 * 18 16 15 20 20 N 1.30944 * 114.19176 * 179.97438 * 19 18 16 21 21 C 1.29432 * 117.36137 * 359.97438 * 20 19 18 22 22 C 1.50705 * 124.80319 * 180.02562 * 21 20 19 23 23 H 1.08993 * 110.33055 * 197.22697 * 22 21 20 24 24 C 1.54479 * 110.36815 * 74.97493 * 22 21 20 25 25 C 1.54513 * 104.06197 * 217.18896 * 24 22 21 26 26 C 1.54479 * 104.06039 * 0.02562 * 25 24 22 27 27 O 1.44422 * 104.80734 * 23.97973 * 26 25 24 28 28 S 1.70946 * 110.39342 * 359.72625 * 21 20 19 29 29 H 0.96998 * 119.99600 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00134 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47380 * 55.00130 * 12 10 9 32 32 H 1.09004 * 109.47037 * 174.99865 * 12 10 9 33 33 H 0.96699 * 114.00066 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.47106 * 184.99942 * 14 10 9 35 35 H 1.08999 * 109.46731 * 64.99830 * 14 10 9 36 36 H 0.96996 * 120.00516 * 0.02562 * 15 14 10 37 37 H 1.07998 * 122.90764 * 0.02562 * 19 18 16 38 38 H 1.08993 * 110.51729 * 335.83413 * 24 22 21 39 39 H 1.08999 * 110.50842 * 98.41534 * 24 22 21 40 40 H 1.08996 * 110.51227 * 118.64670 * 25 24 22 41 41 H 1.08997 * 110.51565 * 241.22449 * 25 24 22 42 42 H 1.09004 * 110.37016 * 142.80971 * 26 25 24 43 43 H 1.08995 * 110.37718 * 265.03164 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5649 -3.2064 -0.5898 12 6 4.2576 -2.9757 1.4370 13 8 5.0736 -2.0682 2.1803 14 6 5.4995 -2.2589 -0.6091 15 7 5.3624 -1.6636 -1.9406 16 6 6.4607 -1.3854 -2.6706 17 8 7.5661 -1.6291 -2.2239 18 6 6.3235 -0.7888 -4.0036 19 6 5.1586 -0.4668 -4.6198 20 7 5.3083 0.0556 -5.8112 21 6 6.5175 0.2003 -6.2497 22 6 6.8821 0.7812 -7.5916 23 1 7.9087 0.5221 -7.8501 24 6 6.7011 2.3153 -7.5805 25 6 6.1600 2.6397 -8.9910 26 6 6.0775 1.2631 -9.6870 27 8 5.9701 0.3095 -8.6077 28 16 7.6427 -0.3532 -5.0878 29 1 -0.4849 0.8401 -0.0004 30 1 3.8646 -0.3622 0.0004 31 1 3.2733 -3.0423 1.9002 32 1 4.7234 -3.9612 1.4305 33 1 5.2086 -2.3257 3.1026 34 1 6.0109 -3.2180 -0.6908 35 1 6.0784 -1.5916 0.0294 36 1 4.4814 -1.4689 -2.2965 37 1 4.1914 -0.6266 -4.1667 38 1 5.9800 2.6094 -6.8179 39 1 7.6570 2.8114 -7.4126 40 1 5.1714 3.0940 -8.9256 41 1 6.8475 3.2981 -9.5218 42 1 5.1960 1.2134 -10.3263 43 1 6.9793 1.0782 -10.2706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507245595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = -94.343052 kcal Electronic energy + Delta-G solvation = -27004.668695 eV Core-core repulsion = 22983.276186 eV Total energy + Delta-G solvation = -4021.392509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.47565 -40.69573 -39.77383 -38.69689 -36.48634 -35.34123 -33.63976 -33.22216 -32.59302 -30.87523 -29.81888 -26.95924 -26.26963 -25.28527 -24.16796 -22.74149 -22.27023 -21.75253 -20.65622 -19.98019 -19.41523 -18.43239 -18.28840 -17.47357 -17.09986 -16.78398 -16.65273 -16.37619 -16.23291 -16.00592 -15.49493 -15.21998 -15.04699 -14.90318 -14.69454 -14.65416 -14.43661 -14.22631 -14.07849 -13.22262 -12.88740 -12.78353 -12.75351 -12.70710 -12.66551 -12.39603 -12.27384 -11.90444 -11.80894 -11.64450 -11.59392 -11.05270 -10.92678 -10.76012 -10.71969 -10.65228 -10.24507 -10.01152 -9.34690 -8.02284 -5.34555 -0.98141 -0.07353 0.44619 1.24866 1.35817 1.39266 1.44847 1.99641 2.13579 2.46735 2.73084 3.02012 3.29166 3.43754 3.56485 3.66635 3.67169 3.69795 3.89465 3.90254 4.01606 4.11931 4.22285 4.33370 4.36238 4.51360 4.60291 4.65712 4.77172 4.80033 4.85813 4.94287 4.95918 5.02795 5.13883 5.14589 5.31240 5.75665 5.77632 6.21235 6.31884 6.48726 6.95421 7.03068 7.08144 7.82097 8.00612 9.18621 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.003048 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.699868 B = 9184.151698 C =10743.512192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.051 4.051 3 Si 0.938 3.062 4 H -0.279 1.279 5 H -0.301 1.301 6 H -0.265 1.265 7 C -0.220 4.220 8 H 0.070 0.930 9 N -0.741 5.741 10 C 0.165 3.835 11 H 0.084 0.916 12 C 0.066 3.934 13 O -0.584 6.584 14 C 0.127 3.873 15 N -0.702 5.702 16 C 0.594 3.406 17 O -0.572 6.572 18 C -0.316 4.316 19 C 0.097 3.903 20 N -0.483 5.483 21 C 0.037 3.963 22 C 0.146 3.854 23 H 0.125 0.875 24 C -0.143 4.143 25 C -0.147 4.147 26 C 0.036 3.964 27 O -0.384 6.384 28 S 0.281 5.719 29 H 0.256 0.744 30 H 0.363 0.637 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.388 0.612 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.411 0.589 37 H 0.188 0.812 38 H 0.059 0.941 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.172 0.866 -16.312 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.244 4.244 3 Si 0.768 3.232 4 H -0.205 1.205 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.351 4.351 8 H 0.088 0.912 9 N -0.384 5.384 10 C 0.056 3.944 11 H 0.102 0.898 12 C -0.015 4.015 13 O -0.391 6.391 14 C 0.003 3.997 15 N -0.353 5.353 16 C 0.379 3.621 17 O -0.454 6.454 18 C -0.440 4.440 19 C -0.062 4.062 20 N -0.197 5.197 21 C -0.238 4.238 22 C 0.085 3.915 23 H 0.142 0.858 24 C -0.183 4.183 25 C -0.185 4.185 26 C -0.040 4.040 27 O -0.304 6.304 28 S 0.540 5.460 29 H 0.065 0.935 30 H 0.196 0.804 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.237 0.763 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.248 0.752 37 H 0.205 0.795 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 20.313 0.825 -16.876 26.421 hybrid contribution -1.690 0.841 1.279 2.280 sum 18.623 1.665 -15.596 24.348 Atomic orbital electron populations 1.69838 1.06783 1.26344 1.59891 1.25249 0.95733 1.00284 1.03095 0.85662 0.78424 0.81226 0.77930 1.20484 1.22791 1.19002 1.19017 0.82097 0.93509 1.40479 0.91249 1.42735 1.02447 1.03405 1.89823 1.20857 0.90629 0.88915 0.94006 0.89830 1.22793 0.93576 0.92056 0.93070 1.86462 1.72119 1.52694 1.27818 1.21562 0.97464 0.99118 0.81515 1.45799 1.09004 1.62438 1.18014 1.16824 0.84496 0.77707 0.83031 1.90797 1.26136 1.55716 1.72732 1.25812 0.98695 1.16726 1.02806 1.22458 0.99318 0.95044 0.89420 1.66101 1.23637 1.16620 1.13371 1.27783 0.92157 1.01491 1.02341 1.21791 0.94870 0.93851 0.81022 0.85801 1.23041 1.03797 0.92503 0.98949 1.22936 1.02961 0.98172 0.94415 1.23707 1.03792 0.86896 0.89570 1.89260 1.63445 1.49418 1.28250 1.83594 1.06815 1.51145 1.04428 0.93495 0.80433 0.94607 0.91115 0.76335 0.89287 0.91716 0.75180 0.79543 0.92168 0.86946 0.91111 0.87354 0.88301 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.78 13.97 21.65 0.30 -60.48 16 2 C -0.05 -2.93 5.50 84.86 0.47 -2.46 16 3 Si 0.94 45.61 27.74 68.60 1.90 47.51 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 6 H -0.26 -12.30 6.52 99.48 0.65 -11.65 16 7 C -0.22 -11.62 10.41 84.03 0.87 -10.74 16 8 H 0.07 3.94 8.06 -2.91 -0.02 3.91 16 9 N -0.74 -32.07 4.31 -322.92 -1.39 -33.47 16 10 C 0.16 5.58 2.84 44.99 0.13 5.71 16 11 H 0.08 2.73 8.08 -2.38 -0.02 2.71 16 12 C 0.07 1.98 6.86 71.98 0.49 2.48 16 13 O -0.58 -17.93 12.64 -148.98 -1.88 -19.81 16 14 C 0.13 3.98 5.12 86.38 0.44 4.42 16 15 N -0.70 -22.08 5.37 -467.09 -2.51 -24.59 16 16 C 0.59 19.36 7.79 86.45 0.67 20.04 16 17 O -0.57 -21.28 16.97 -4.32 -0.07 -21.36 16 18 C -0.32 -9.13 6.48 23.88 0.15 -8.98 16 19 C 0.10 2.82 10.93 84.23 0.92 3.74 16 20 N -0.48 -14.16 10.47 -190.30 -1.99 -16.15 16 21 C 0.04 0.86 6.24 88.46 0.55 1.41 16 22 C 0.15 2.54 3.81 30.35 0.12 2.66 16 23 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 24 C -0.14 -2.00 6.62 31.61 0.21 -1.79 16 25 C -0.15 -1.58 7.09 31.61 0.22 -1.36 16 26 C 0.04 0.46 7.63 72.48 0.55 1.01 16 27 O -0.38 -8.31 11.30 -148.98 -1.68 -9.99 16 28 S 0.28 6.31 23.01 -56.49 -1.30 5.01 16 29 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.36 16.25 5.66 -92.71 -0.52 15.73 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.39 8.09 9.12 -74.06 -0.68 7.41 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.06 2.26 7.39 -2.39 -0.02 2.24 16 36 H 0.41 12.84 6.85 -92.71 -0.63 12.20 16 37 H 0.19 5.16 7.15 -2.91 -0.02 5.14 16 38 H 0.06 1.15 7.86 -2.39 -0.02 1.13 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -76.25 375.57 -3.64 -79.89 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -0.82 Total: 37.29 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 5.81 Total: 16.15 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -5.59 Total: -134.69 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -3.64 Total: -51.16 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Atomic # 16 Polarization: 6.31 SS G_CDS: -1.30 Total: 5.01 kcal Total: -76.25 -3.64 -79.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507245595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.451 kcal (2) G-P(sol) polarization free energy of solvation -76.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds