Wall clock time and date at job start Sat Apr 11 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.47379 * 35.00578 * 10 9 7 12 12 C 1.52996 * 109.47634 * 275.00141 * 10 9 7 13 13 O 1.42901 * 109.47107 * 295.00173 * 12 10 9 14 14 C 1.53008 * 109.46771 * 155.00200 * 10 9 7 15 15 N 1.46498 * 109.47041 * 305.00442 * 14 10 9 16 16 C 1.34779 * 119.99661 * 180.02562 * 15 14 10 17 17 O 1.21680 * 120.00507 * 359.97438 * 16 15 14 18 18 C 1.46687 * 119.99576 * 180.02562 * 16 15 14 19 19 C 1.35658 * 126.13203 * 359.67829 * 18 16 15 20 20 N 1.30941 * 114.19075 * 179.82840 * 19 18 16 21 21 C 1.29432 * 117.36652 * 0.48625 * 20 19 18 22 22 C 1.50694 * 124.80794 * 179.76559 * 21 20 19 23 23 H 1.08999 * 109.87229 * 164.26001 * 22 21 20 24 24 C 1.54100 * 109.88234 * 285.26635 * 22 21 20 25 25 C 1.54807 * 104.18848 * 121.45149 * 24 22 21 26 26 C 1.54993 * 102.09210 * 20.88607 * 25 24 22 27 27 O 1.43747 * 109.88035 * 43.25334 * 22 21 20 28 28 S 1.70953 * 110.38825 * 359.73185 * 21 20 19 29 29 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 31 31 H 1.08995 * 109.46872 * 55.00531 * 12 10 9 32 32 H 1.09007 * 109.47156 * 175.00139 * 12 10 9 33 33 H 0.96701 * 113.99495 * 179.97438 * 13 12 10 34 34 H 1.08995 * 109.47058 * 65.00277 * 14 10 9 35 35 H 1.09001 * 109.46930 * 185.00358 * 14 10 9 36 36 H 0.97002 * 120.00256 * 359.97438 * 15 14 10 37 37 H 1.07998 * 122.90722 * 0.02562 * 19 18 16 38 38 H 1.08995 * 110.49210 * 240.13307 * 24 22 21 39 39 H 1.09002 * 110.48247 * 2.78086 * 24 22 21 40 40 H 1.09005 * 110.91014 * 139.08028 * 25 24 22 41 41 H 1.09004 * 110.91038 * 262.64841 * 25 24 22 42 42 H 1.08998 * 110.62323 * 81.47623 * 26 25 24 43 43 H 1.09007 * 110.62003 * 204.47704 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9687 -3.5505 0.5901 12 6 2.4220 -4.0356 -1.4364 13 8 1.2278 -4.2886 -2.1793 14 6 1.1808 -4.7521 0.6102 15 7 0.7340 -4.3354 1.9417 16 6 -0.0550 -5.1476 2.6725 17 8 -0.3967 -6.2268 2.2263 18 6 -0.5028 -4.7301 4.0055 19 6 -0.1944 -3.5626 4.6237 20 7 -0.7249 -3.4288 5.8133 21 6 -1.4538 -4.4039 6.2527 22 6 -2.1380 -4.4293 7.5951 23 1 -2.8969 -5.2116 7.6095 24 6 -1.1017 -4.6842 8.7068 25 6 -1.2310 -3.4525 9.6357 26 6 -2.6454 -2.9263 9.2822 27 8 -2.7462 -3.1536 7.8580 28 16 -1.5313 -5.6587 5.0942 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 0.0042 31 1 2.9717 -3.2165 -1.8999 32 1 3.0426 -4.9318 -1.4298 33 1 1.3831 -4.5346 -3.1016 34 1 0.3133 -4.9200 -0.0280 35 1 1.7557 -5.6745 0.6920 36 1 1.0067 -3.4752 2.2976 37 1 0.4318 -2.8073 4.1723 38 1 -1.3416 -5.5984 9.2497 39 1 -0.0976 -4.7412 8.2864 40 1 -1.1767 -3.7481 10.6835 41 1 -0.4692 -2.7084 9.4034 42 1 -3.4098 -3.4926 9.8143 43 1 -2.7269 -1.8630 9.5083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507245597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:21 Heat of formation + Delta-G solvation = -68.427202 kcal Electronic energy + Delta-G solvation = -26931.297873 eV Core-core repulsion = 22911.029160 eV Total energy + Delta-G solvation = -4020.268714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37523 -39.53737 -38.64123 -37.10896 -34.92876 -33.56248 -32.57212 -31.91637 -31.19621 -29.32593 -28.11489 -25.83198 -24.96232 -23.64715 -23.15486 -21.88497 -21.39589 -20.15661 -19.33334 -18.49637 -17.60960 -17.15880 -16.67005 -16.60738 -16.01977 -15.55914 -15.35470 -15.21587 -14.76997 -14.26622 -14.21165 -13.96305 -13.93450 -13.62587 -13.41077 -13.36484 -12.99530 -12.84675 -12.10657 -12.07478 -11.94817 -11.60692 -11.58485 -11.44942 -11.14499 -10.89414 -10.86636 -10.61071 -10.25381 -10.13332 -10.10802 -9.79878 -9.51489 -9.47463 -9.38171 -9.02344 -8.99466 -8.64608 -7.06039 -5.82343 -3.13552 0.19253 1.04506 1.58903 2.47218 3.34062 3.39143 3.44211 3.46906 3.54327 3.63296 3.81823 4.26500 4.43760 4.51623 4.53009 4.71715 4.89306 4.90867 4.97328 5.10779 5.26900 5.28272 5.37904 5.38893 5.44111 5.48298 5.53935 5.60345 5.74883 5.85553 5.97746 6.01548 6.02247 6.30895 6.47886 6.48914 6.69828 6.79064 7.60346 7.61314 7.79029 8.18829 8.33973 8.40953 9.46536 10.00818 10.37214 11.38881 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011169 B = 0.002971 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.445199 B = 9422.511830 C =11416.863293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.251 4.251 8 H 0.070 0.930 9 N -0.714 5.714 10 C 0.165 3.835 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.120 3.880 15 N -0.697 5.697 16 C 0.590 3.410 17 O -0.548 6.548 18 C -0.281 4.281 19 C 0.095 3.905 20 N -0.450 5.450 21 C 0.026 3.974 22 C 0.157 3.843 23 H 0.092 0.908 24 C -0.143 4.143 25 C -0.151 4.151 26 C 0.045 3.955 27 O -0.352 6.352 28 S 0.227 5.773 29 H 0.256 0.744 30 H 0.389 0.611 31 H 0.049 0.951 32 H 0.027 0.973 33 H 0.364 0.636 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.410 0.590 37 H 0.187 0.813 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 -12.251 16.698 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.356 5.356 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.005 4.005 15 N -0.348 5.348 16 C 0.374 3.626 17 O -0.428 6.428 18 C -0.406 4.406 19 C -0.063 4.063 20 N -0.164 5.164 21 C -0.249 4.249 22 C 0.095 3.905 23 H 0.109 0.891 24 C -0.182 4.182 25 C -0.189 4.189 26 C -0.032 4.032 27 O -0.270 6.270 28 S 0.485 5.515 29 H 0.066 0.934 30 H 0.224 0.776 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.209 0.791 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.247 0.753 37 H 0.204 0.796 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.989 -13.104 17.126 21.656 hybrid contribution 1.299 1.986 -0.921 2.545 sum -0.691 -11.118 16.205 19.665 Atomic orbital electron populations 1.69675 1.05090 1.25821 1.56452 1.24752 0.95438 0.97663 1.02436 0.86236 0.78664 0.83971 0.77503 1.21765 1.21734 1.20730 1.19196 0.90894 0.83986 1.44134 0.91171 1.42384 1.06072 0.99034 1.88066 1.20601 0.95011 0.86972 0.92018 0.91562 1.23024 0.86530 0.97313 0.95304 1.86571 1.32139 1.91912 1.25727 1.21634 0.99758 0.97106 0.81957 1.45758 1.49713 1.21421 1.17922 1.16658 0.78882 0.84399 0.82632 1.90809 1.57596 1.22314 1.72065 1.25895 1.11053 1.01171 1.02432 1.22384 0.98710 0.95805 0.89439 1.66026 1.09425 1.27356 1.13603 1.27374 1.01184 0.94917 1.01450 1.21161 0.93311 0.88223 0.87777 0.89075 1.22985 1.00239 0.99398 0.95592 1.23116 0.98307 0.97658 0.99795 1.23654 0.95882 1.02125 0.81513 1.89084 1.78761 1.35481 1.23679 1.83829 1.42949 1.19034 1.05669 0.93357 0.77641 0.93234 0.95487 0.79112 0.90221 0.91749 0.75255 0.79574 0.89689 0.89796 0.89931 0.89891 0.91864 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.21 13.06 55.49 0.72 -26.49 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.25 -6.53 9.93 -15.06 -0.15 -6.68 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.71 -16.79 4.51 -53.42 -0.24 -17.03 16 10 C 0.17 3.08 2.84 -67.93 -0.19 2.89 16 11 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 12 C 0.06 1.02 6.86 37.16 0.25 1.27 16 13 O -0.56 -9.89 12.64 -35.23 -0.45 -10.34 16 14 C 0.12 2.11 5.12 -4.04 -0.02 2.09 16 15 N -0.70 -12.09 5.37 -61.62 -0.33 -12.42 16 16 C 0.59 10.51 7.79 -12.85 -0.10 10.41 16 17 O -0.55 -11.09 16.96 5.21 0.09 -11.00 16 18 C -0.28 -4.41 6.48 -37.10 -0.24 -4.65 16 19 C 0.09 1.45 10.93 -18.85 -0.21 1.24 16 20 N -0.45 -6.88 10.48 -11.50 -0.12 -7.00 16 21 C 0.03 0.34 6.08 -13.29 -0.08 0.26 16 22 C 0.16 1.60 3.93 -27.31 -0.11 1.49 16 23 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 24 C -0.14 -1.10 6.63 -25.20 -0.17 -1.26 16 25 C -0.15 -1.06 7.16 -24.73 -0.18 -1.24 16 26 C 0.04 0.36 7.72 38.21 0.29 0.65 16 27 O -0.35 -4.29 11.17 -35.23 -0.39 -4.68 16 28 S 0.23 2.92 23.01 -107.50 -2.47 0.45 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.39 10.24 7.80 -40.82 -0.32 9.92 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.36 4.62 9.12 45.56 0.42 5.03 16 34 H 0.08 1.59 7.39 -51.93 -0.38 1.20 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.41 7.05 6.85 -40.82 -0.28 6.77 16 37 H 0.19 2.69 7.15 -52.49 -0.38 2.32 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -34.20 378.53 -8.61 -42.81 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -5.11 Total: 17.09 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -0.99 Total: 6.22 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.03 Total: -62.93 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.75 Total: -26.02 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.47 Total: 0.45 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.20 -8.61 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507245597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.616 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds