Wall clock time and date at job start Sat Apr 11 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.47379 * 35.00578 * 10 9 7 12 12 C 1.52996 * 109.47634 * 275.00141 * 10 9 7 13 13 O 1.42901 * 109.47107 * 295.00173 * 12 10 9 14 14 C 1.53008 * 109.46771 * 155.00200 * 10 9 7 15 15 N 1.46498 * 109.47041 * 305.00442 * 14 10 9 16 16 C 1.34779 * 119.99661 * 180.02562 * 15 14 10 17 17 O 1.21680 * 120.00507 * 359.97438 * 16 15 14 18 18 C 1.46687 * 119.99576 * 180.02562 * 16 15 14 19 19 C 1.35658 * 126.13203 * 359.67829 * 18 16 15 20 20 N 1.30941 * 114.19075 * 179.82840 * 19 18 16 21 21 C 1.29432 * 117.36652 * 0.48625 * 20 19 18 22 22 C 1.50694 * 124.80794 * 179.76559 * 21 20 19 23 23 H 1.08999 * 109.87229 * 164.26001 * 22 21 20 24 24 C 1.54100 * 109.88234 * 285.26635 * 22 21 20 25 25 C 1.54807 * 104.18848 * 121.45149 * 24 22 21 26 26 C 1.54993 * 102.09210 * 20.88607 * 25 24 22 27 27 O 1.43747 * 109.88035 * 43.25334 * 22 21 20 28 28 S 1.70953 * 110.38825 * 359.73185 * 21 20 19 29 29 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 31 31 H 1.08995 * 109.46872 * 55.00531 * 12 10 9 32 32 H 1.09007 * 109.47156 * 175.00139 * 12 10 9 33 33 H 0.96701 * 113.99495 * 179.97438 * 13 12 10 34 34 H 1.08995 * 109.47058 * 65.00277 * 14 10 9 35 35 H 1.09001 * 109.46930 * 185.00358 * 14 10 9 36 36 H 0.97002 * 120.00256 * 359.97438 * 15 14 10 37 37 H 1.07998 * 122.90722 * 0.02562 * 19 18 16 38 38 H 1.08995 * 110.49210 * 240.13307 * 24 22 21 39 39 H 1.09002 * 110.48247 * 2.78086 * 24 22 21 40 40 H 1.09005 * 110.91014 * 139.08028 * 25 24 22 41 41 H 1.09004 * 110.91038 * 262.64841 * 25 24 22 42 42 H 1.08998 * 110.62323 * 81.47623 * 26 25 24 43 43 H 1.09007 * 110.62003 * 204.47704 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9687 -3.5505 0.5901 12 6 2.4220 -4.0356 -1.4364 13 8 1.2278 -4.2886 -2.1793 14 6 1.1808 -4.7521 0.6102 15 7 0.7340 -4.3354 1.9417 16 6 -0.0550 -5.1476 2.6725 17 8 -0.3967 -6.2268 2.2263 18 6 -0.5028 -4.7301 4.0055 19 6 -0.1944 -3.5626 4.6237 20 7 -0.7249 -3.4288 5.8133 21 6 -1.4538 -4.4039 6.2527 22 6 -2.1380 -4.4293 7.5951 23 1 -2.8969 -5.2116 7.6095 24 6 -1.1017 -4.6842 8.7068 25 6 -1.2310 -3.4525 9.6357 26 6 -2.6454 -2.9263 9.2822 27 8 -2.7462 -3.1536 7.8580 28 16 -1.5313 -5.6587 5.0942 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 0.0042 31 1 2.9717 -3.2165 -1.8999 32 1 3.0426 -4.9318 -1.4298 33 1 1.3831 -4.5346 -3.1016 34 1 0.3133 -4.9200 -0.0280 35 1 1.7557 -5.6745 0.6920 36 1 1.0067 -3.4752 2.2976 37 1 0.4318 -2.8073 4.1723 38 1 -1.3416 -5.5984 9.2497 39 1 -0.0976 -4.7412 8.2864 40 1 -1.1767 -3.7481 10.6835 41 1 -0.4692 -2.7084 9.4034 42 1 -3.4098 -3.4926 9.8143 43 1 -2.7269 -1.8630 9.5083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507245597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:21 Heat of formation + Delta-G solvation = -97.029266 kcal Electronic energy + Delta-G solvation = -26932.538152 eV Core-core repulsion = 22911.029160 eV Total energy + Delta-G solvation = -4021.508992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44924 -40.66833 -39.71142 -38.59281 -36.41683 -35.27386 -33.52877 -33.14996 -32.44937 -30.55720 -29.61943 -26.90493 -26.22060 -25.58837 -24.04053 -22.73910 -22.35977 -21.67391 -20.55378 -19.66991 -19.26834 -18.40350 -18.14827 -17.49042 -17.15100 -16.69517 -16.58788 -16.40501 -16.13982 -15.78477 -15.52942 -15.20680 -15.03617 -14.89905 -14.58763 -14.55163 -14.38019 -14.20151 -13.69005 -13.06786 -12.76918 -12.74452 -12.71400 -12.68322 -12.67082 -12.25001 -12.17499 -11.91135 -11.75024 -11.71059 -11.55240 -10.98822 -10.91619 -10.71728 -10.65365 -10.62120 -10.20046 -9.96393 -9.01408 -7.90307 -5.19756 -0.93770 -0.02852 0.48911 1.28987 1.49906 1.49974 1.58457 2.02156 2.20695 2.57447 2.79238 3.01078 3.42247 3.57585 3.61735 3.67708 3.71434 3.88429 3.89169 3.98794 4.06179 4.11582 4.29832 4.40481 4.42830 4.55672 4.60929 4.73162 4.80362 4.83774 4.87992 4.94228 4.99703 5.03566 5.19075 5.21094 5.36360 5.55144 5.82245 6.27915 6.37060 6.51563 7.00124 7.08061 7.36521 8.08575 8.33533 9.32238 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011169 B = 0.002971 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.445199 B = 9422.511830 C =11416.863293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.070 4.070 3 Si 0.967 3.033 4 H -0.293 1.293 5 H -0.303 1.303 6 H -0.265 1.265 7 C -0.235 4.235 8 H 0.083 0.917 9 N -0.724 5.724 10 C 0.160 3.840 11 H 0.082 0.918 12 C 0.065 3.935 13 O -0.585 6.585 14 C 0.130 3.870 15 N -0.696 5.696 16 C 0.592 3.408 17 O -0.577 6.577 18 C -0.315 4.315 19 C 0.100 3.900 20 N -0.481 5.481 21 C 0.035 3.965 22 C 0.147 3.853 23 H 0.119 0.881 24 C -0.139 4.139 25 C -0.147 4.147 26 C 0.039 3.961 27 O -0.389 6.389 28 S 0.270 5.730 29 H 0.247 0.753 30 H 0.372 0.628 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.386 0.614 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.411 0.589 37 H 0.186 0.814 38 H 0.118 0.882 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 -13.618 18.358 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.797 3.203 4 H -0.221 1.221 5 H -0.230 1.230 6 H -0.189 1.189 7 C -0.367 4.367 8 H 0.101 0.899 9 N -0.364 5.364 10 C 0.051 3.949 11 H 0.100 0.900 12 C -0.016 4.016 13 O -0.391 6.391 14 C 0.006 3.994 15 N -0.346 5.346 16 C 0.378 3.622 17 O -0.459 6.459 18 C -0.440 4.440 19 C -0.059 4.059 20 N -0.196 5.196 21 C -0.240 4.240 22 C 0.086 3.914 23 H 0.137 0.863 24 C -0.178 4.178 25 C -0.185 4.185 26 C -0.037 4.037 27 O -0.308 6.308 28 S 0.529 5.471 29 H 0.056 0.944 30 H 0.204 0.796 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.234 0.766 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.248 0.752 37 H 0.202 0.798 38 H 0.137 0.863 39 H 0.088 0.912 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.031 -14.517 18.776 23.756 hybrid contribution 1.010 2.305 -1.378 2.869 sum -0.022 -12.212 17.397 21.256 Atomic orbital electron populations 1.69843 1.06678 1.25710 1.59386 1.25472 0.96083 1.00812 1.03931 0.85243 0.77927 0.80108 0.77048 1.22090 1.22998 1.18945 1.19605 0.91504 0.84732 1.40860 0.89917 1.42498 1.05374 1.00260 1.88221 1.20879 0.95113 0.85179 0.93713 0.90007 1.22869 0.86554 0.98720 0.93449 1.86525 1.32898 1.92084 1.27611 1.21507 0.98790 0.97551 0.81592 1.45747 1.49695 1.21370 1.17813 1.16869 0.78284 0.83886 0.83204 1.90779 1.58755 1.23453 1.72938 1.25774 1.13352 1.02466 1.02368 1.22413 0.98330 0.95607 0.89593 1.66092 1.10966 1.28697 1.13802 1.28089 0.99435 0.94133 1.02321 1.21600 0.94542 0.88468 0.86828 0.86310 1.23037 0.98687 1.01158 0.94944 1.23114 0.97141 0.96882 1.01326 1.23901 0.97187 1.02838 0.79799 1.89039 1.79086 1.36463 1.26243 1.83589 1.41414 1.17923 1.04145 0.94382 0.79626 0.94423 0.91421 0.76642 0.92661 0.89637 0.75228 0.79751 0.86318 0.91190 0.86990 0.91751 0.89326 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.48 13.06 21.65 0.28 -58.20 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 3 Si 0.97 45.03 29.55 68.60 2.03 47.05 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.24 -12.14 9.93 84.03 0.83 -11.31 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.72 -34.12 4.51 -322.94 -1.46 -35.58 16 10 C 0.16 5.80 2.84 44.99 0.13 5.93 16 11 H 0.08 2.72 8.08 -2.39 -0.02 2.70 16 12 C 0.06 2.08 6.86 71.98 0.49 2.57 16 13 O -0.58 -20.00 12.64 -148.98 -1.88 -21.88 16 14 C 0.13 4.52 5.12 86.38 0.44 4.96 16 15 N -0.70 -24.37 5.37 -467.08 -2.51 -26.87 16 16 C 0.59 21.33 7.79 86.45 0.67 22.00 16 17 O -0.58 -23.48 16.96 -4.28 -0.07 -23.56 16 18 C -0.32 -9.99 6.48 23.88 0.15 -9.84 16 19 C 0.10 3.12 10.93 84.23 0.92 4.04 16 20 N -0.48 -14.78 10.48 -190.31 -1.99 -16.78 16 21 C 0.03 0.87 6.08 88.46 0.54 1.41 16 22 C 0.15 2.73 3.93 30.22 0.12 2.85 16 23 H 0.12 1.51 8.14 -2.39 -0.02 1.50 16 24 C -0.14 -1.79 6.63 31.58 0.21 -1.58 16 25 C -0.15 -1.75 7.16 31.89 0.23 -1.52 16 26 C 0.04 0.54 7.72 72.66 0.56 1.10 16 27 O -0.39 -9.06 11.17 -148.98 -1.66 -10.72 16 28 S 0.27 6.72 23.01 -56.49 -1.30 5.42 16 29 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 30 H 0.37 20.06 7.80 -92.71 -0.72 19.33 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.39 9.20 9.12 -74.06 -0.68 8.52 16 34 H 0.06 2.22 7.39 -2.39 -0.02 2.20 16 35 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.41 14.38 6.85 -92.71 -0.63 13.74 16 37 H 0.19 5.59 7.15 -2.91 -0.02 5.57 16 38 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 1.12 7.69 -2.39 -0.02 1.10 16 40 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -75.16 378.53 -3.76 -78.92 By element: Atomic # 1 Polarization: 45.96 SS G_CDS: -0.96 Total: 45.01 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 5.77 Total: 17.18 kcal Atomic # 7 Polarization: -131.75 SS G_CDS: -5.68 Total: -137.43 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -3.62 Total: -56.16 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 6.72 SS G_CDS: -1.30 Total: 5.42 kcal Total: -75.16 -3.76 -78.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507245597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.108 kcal (2) G-P(sol) polarization free energy of solvation -75.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds