Wall clock time and date at job start Sat Apr 11 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.46956 * 325.00109 * 10 9 7 12 12 C 1.52995 * 109.47022 * 84.99644 * 10 9 7 13 13 O 1.42907 * 109.47220 * 65.00251 * 12 10 9 14 14 C 1.52999 * 109.47155 * 205.00095 * 10 9 7 15 15 N 1.46494 * 109.47192 * 55.00114 * 14 10 9 16 16 C 1.34781 * 119.99803 * 180.02562 * 15 14 10 17 17 O 1.21685 * 119.99794 * 359.97438 * 16 15 14 18 18 C 1.46683 * 119.99717 * 179.97438 * 16 15 14 19 19 C 1.35660 * 126.13236 * 0.02562 * 18 16 15 20 20 N 1.30945 * 114.19166 * 180.02562 * 19 18 16 21 21 C 1.29428 * 117.36316 * 359.97438 * 20 19 18 22 22 C 1.50699 * 124.80358 * 179.97438 * 21 20 19 23 23 H 1.09002 * 110.33097 * 197.22753 * 22 21 20 24 24 C 1.54481 * 110.36886 * 74.98346 * 22 21 20 25 25 C 1.54503 * 104.06343 * 217.18769 * 24 22 21 26 26 C 1.54480 * 104.06606 * 0.02562 * 25 24 22 27 27 O 1.44421 * 110.37721 * 319.60224 * 22 21 20 28 28 S 1.70958 * 110.39022 * 359.73122 * 21 20 19 29 29 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47519 * 185.00132 * 12 10 9 32 32 H 1.09000 * 109.47688 * 305.00092 * 12 10 9 33 33 H 0.96693 * 114.00053 * 179.97438 * 13 12 10 34 34 H 1.09001 * 109.46859 * 174.99873 * 14 10 9 35 35 H 1.09000 * 109.46643 * 294.99576 * 14 10 9 36 36 H 0.97004 * 120.00480 * 359.97438 * 15 14 10 37 37 H 1.08001 * 122.90316 * 0.04023 * 19 18 16 38 38 H 1.08995 * 110.51302 * 335.83546 * 24 22 21 39 39 H 1.09007 * 110.51089 * 98.40639 * 24 22 21 40 40 H 1.09001 * 110.51368 * 118.64304 * 25 24 22 41 41 H 1.08997 * 110.51427 * 241.21565 * 25 24 22 42 42 H 1.08993 * 110.37803 * 142.80536 * 26 25 24 43 43 H 1.08998 * 110.37302 * 265.04223 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9688 -3.5505 -0.5889 12 6 2.4219 -4.0355 1.4375 13 8 1.2277 -4.2885 2.1805 14 6 1.1808 -4.7521 -0.6091 15 7 0.7343 -4.3355 -1.9407 16 6 -0.0556 -5.1473 -2.6712 17 8 -0.3974 -6.2265 -2.2248 18 6 -0.5032 -4.7299 -4.0042 19 6 -0.1985 -3.5604 -4.6205 20 7 -0.7255 -3.4285 -5.8119 21 6 -1.4554 -4.4031 -6.2508 22 6 -2.1406 -4.4280 -7.5928 23 1 -2.9199 -5.1900 -7.6060 24 6 -1.1132 -4.6899 -8.7162 25 6 -1.6030 -3.8076 -9.8862 26 6 -2.8681 -3.1164 -9.3310 27 8 -2.6975 -3.1307 -7.8972 28 16 -1.5267 -5.6610 -5.0953 29 1 -0.4849 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 3.0425 -4.9317 1.4311 32 1 2.9716 -3.2164 1.9011 33 1 1.3829 -4.5352 3.1024 34 1 1.7558 -5.6746 -0.6908 35 1 0.3133 -4.9200 0.0291 36 1 1.0064 -3.4750 -2.2964 37 1 0.4251 -2.8038 -4.1677 38 1 -0.1155 -4.3856 -8.4000 39 1 -1.1182 -5.7422 -9.0006 40 1 -0.8475 -3.0669 -10.1483 41 1 -1.8496 -4.4229 -10.7514 42 1 -2.9315 -2.0913 -9.6958 43 1 -3.7605 -3.6748 -9.6134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507245599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:25 Heat of formation + Delta-G solvation = -68.092255 kcal Electronic energy + Delta-G solvation = -26874.893949 eV Core-core repulsion = 22854.639759 eV Total energy + Delta-G solvation = -4020.254189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.36124 -39.54848 -38.67380 -37.10969 -34.92908 -33.56330 -32.54503 -31.94731 -31.20375 -29.30767 -28.11089 -25.87986 -24.98479 -23.64622 -23.24461 -21.75940 -21.40543 -20.15701 -19.34532 -18.50318 -17.61747 -17.15917 -16.62049 -16.57411 -16.07925 -15.52145 -15.42740 -15.22821 -14.78014 -14.30680 -14.27262 -14.03601 -13.94283 -13.55178 -13.40816 -13.30053 -12.99534 -12.84157 -12.15768 -12.05532 -11.94969 -11.67420 -11.61668 -11.44834 -11.06467 -10.89386 -10.84529 -10.61898 -10.23602 -10.19094 -10.13467 -9.79349 -9.53975 -9.47912 -9.38256 -9.03415 -8.98939 -8.64950 -7.05959 -5.81987 -3.13214 0.17573 1.02197 1.56977 2.46191 3.33527 3.39650 3.44509 3.46512 3.52940 3.62197 3.83140 4.29327 4.43661 4.51946 4.53218 4.70099 4.87108 4.90658 4.96635 5.05368 5.23342 5.27515 5.36260 5.38796 5.45815 5.48380 5.53998 5.61683 5.70299 5.85551 5.97350 6.01348 6.01867 6.30824 6.43344 6.48024 6.69811 6.78873 7.59332 7.61094 7.78701 8.18808 8.34346 8.40521 9.46818 10.01040 10.37474 11.39184 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.002912 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.579000 B = 9614.575138 C =11583.595043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.005 4.005 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.252 4.252 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.120 3.880 15 N -0.697 5.697 16 C 0.590 3.410 17 O -0.548 6.548 18 C -0.280 4.280 19 C 0.095 3.905 20 N -0.449 5.449 21 C 0.029 3.971 22 C 0.154 3.846 23 H 0.092 0.908 24 C -0.143 4.143 25 C -0.152 4.152 26 C 0.042 3.958 27 O -0.348 6.348 28 S 0.230 5.770 29 H 0.257 0.743 30 H 0.389 0.611 31 H 0.027 0.973 32 H 0.049 0.951 33 H 0.364 0.636 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.411 0.589 37 H 0.188 0.812 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 -12.651 -16.551 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.383 4.383 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.054 3.946 11 H 0.085 0.915 12 C -0.022 4.022 13 O -0.364 6.364 14 C -0.005 4.005 15 N -0.348 5.348 16 C 0.374 3.626 17 O -0.428 6.428 18 C -0.405 4.405 19 C -0.063 4.063 20 N -0.163 5.163 21 C -0.246 4.246 22 C 0.093 3.907 23 H 0.110 0.890 24 C -0.182 4.182 25 C -0.190 4.190 26 C -0.035 4.035 27 O -0.266 6.266 28 S 0.488 5.512 29 H 0.067 0.933 30 H 0.224 0.776 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.209 0.791 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.248 0.752 37 H 0.205 0.795 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.436 -13.469 -16.983 21.812 hybrid contribution 1.255 1.976 0.883 2.502 sum -1.181 -11.492 -16.100 19.816 Atomic orbital electron populations 1.69662 1.05089 1.25949 1.56356 1.24754 0.95442 0.97665 1.02413 0.86303 0.78555 0.83661 0.77793 1.21177 1.21686 1.21352 1.19150 0.90864 0.83998 1.44276 0.91228 1.42378 1.06061 0.99020 1.88068 1.20602 0.95020 0.86976 0.92010 0.91541 1.23030 0.86525 0.97315 0.95314 1.86569 1.32146 1.91892 1.25752 1.21633 0.99762 0.97111 0.81945 1.45759 1.49652 1.21428 1.17943 1.16653 0.78892 0.84412 0.82621 1.90811 1.57611 1.22309 1.72045 1.25908 1.11144 1.01012 1.02413 1.22392 0.98717 0.95847 0.89355 1.66032 1.09271 1.27429 1.13522 1.27098 1.01272 0.95065 1.01163 1.21370 0.93747 0.87818 0.87797 0.89011 1.22992 1.00223 1.01016 0.93977 1.22928 0.98452 0.99459 0.98141 1.23462 0.96885 1.02148 0.80991 1.89314 1.83277 1.32087 1.21937 1.83818 1.43145 1.18590 1.05674 0.93301 0.77645 0.95490 0.93236 0.79113 0.91742 0.90220 0.75236 0.79508 0.89721 0.89747 0.90208 0.90215 0.88573 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.21 13.06 55.49 0.72 -26.48 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 9 N -0.71 -16.77 4.51 -53.43 -0.24 -17.01 16 10 C 0.17 3.08 2.84 -67.93 -0.19 2.88 16 11 H 0.07 1.17 8.08 -51.92 -0.42 0.75 16 12 C 0.06 1.01 6.86 37.16 0.25 1.27 16 13 O -0.56 -9.88 12.64 -35.23 -0.45 -10.33 16 14 C 0.12 2.11 5.12 -4.05 -0.02 2.09 16 15 N -0.70 -12.05 5.37 -61.62 -0.33 -12.38 16 16 C 0.59 10.47 7.79 -12.85 -0.10 10.37 16 17 O -0.55 -11.04 16.97 5.20 0.09 -10.95 16 18 C -0.28 -4.38 6.48 -37.10 -0.24 -4.62 16 19 C 0.10 1.46 10.93 -18.85 -0.21 1.25 16 20 N -0.45 -6.90 10.47 -11.50 -0.12 -7.02 16 21 C 0.03 0.38 6.24 -13.29 -0.08 0.30 16 22 C 0.15 1.58 3.80 -27.11 -0.10 1.48 16 23 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 24 C -0.14 -1.13 6.62 -25.17 -0.17 -1.29 16 25 C -0.15 -0.99 7.09 -25.17 -0.18 -1.17 16 26 C 0.04 0.33 7.63 37.93 0.29 0.62 16 27 O -0.35 -4.27 11.30 -35.23 -0.40 -4.67 16 28 S 0.23 2.93 23.01 -107.50 -2.47 0.46 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.39 10.23 7.80 -40.82 -0.32 9.91 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.36 4.61 9.12 45.56 0.42 5.03 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.58 7.39 -51.93 -0.38 1.20 16 36 H 0.41 7.04 6.85 -40.82 -0.28 6.76 16 37 H 0.19 2.71 7.15 -52.49 -0.38 2.33 16 38 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 39 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -34.18 378.69 -8.63 -42.81 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -5.12 Total: 16.97 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.99 Total: 6.21 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: 0.03 Total: -62.89 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.75 Total: -25.95 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.47 Total: 0.46 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.18 -8.63 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507245599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.283 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds