Wall clock time and date at job start Sat Apr 11 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.46956 * 325.00109 * 10 9 7 12 12 C 1.52995 * 109.47022 * 84.99644 * 10 9 7 13 13 O 1.42907 * 109.47220 * 65.00251 * 12 10 9 14 14 C 1.52999 * 109.47155 * 205.00095 * 10 9 7 15 15 N 1.46494 * 109.47192 * 55.00114 * 14 10 9 16 16 C 1.34781 * 119.99803 * 180.02562 * 15 14 10 17 17 O 1.21685 * 119.99794 * 359.97438 * 16 15 14 18 18 C 1.46683 * 119.99717 * 179.97438 * 16 15 14 19 19 C 1.35660 * 126.13236 * 0.02562 * 18 16 15 20 20 N 1.30945 * 114.19166 * 180.02562 * 19 18 16 21 21 C 1.29428 * 117.36316 * 359.97438 * 20 19 18 22 22 C 1.50699 * 124.80358 * 179.97438 * 21 20 19 23 23 H 1.09002 * 110.33097 * 197.22753 * 22 21 20 24 24 C 1.54481 * 110.36886 * 74.98346 * 22 21 20 25 25 C 1.54503 * 104.06343 * 217.18769 * 24 22 21 26 26 C 1.54480 * 104.06606 * 0.02562 * 25 24 22 27 27 O 1.44421 * 110.37721 * 319.60224 * 22 21 20 28 28 S 1.70958 * 110.39022 * 359.73122 * 21 20 19 29 29 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47519 * 185.00132 * 12 10 9 32 32 H 1.09000 * 109.47688 * 305.00092 * 12 10 9 33 33 H 0.96693 * 114.00053 * 179.97438 * 13 12 10 34 34 H 1.09001 * 109.46859 * 174.99873 * 14 10 9 35 35 H 1.09000 * 109.46643 * 294.99576 * 14 10 9 36 36 H 0.97004 * 120.00480 * 359.97438 * 15 14 10 37 37 H 1.08001 * 122.90316 * 0.04023 * 19 18 16 38 38 H 1.08995 * 110.51302 * 335.83546 * 24 22 21 39 39 H 1.09007 * 110.51089 * 98.40639 * 24 22 21 40 40 H 1.09001 * 110.51368 * 118.64304 * 25 24 22 41 41 H 1.08997 * 110.51427 * 241.21565 * 25 24 22 42 42 H 1.08993 * 110.37803 * 142.80536 * 26 25 24 43 43 H 1.08998 * 110.37302 * 265.04223 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9688 -3.5505 -0.5889 12 6 2.4219 -4.0355 1.4375 13 8 1.2277 -4.2885 2.1805 14 6 1.1808 -4.7521 -0.6091 15 7 0.7343 -4.3355 -1.9407 16 6 -0.0556 -5.1473 -2.6712 17 8 -0.3974 -6.2265 -2.2248 18 6 -0.5032 -4.7299 -4.0042 19 6 -0.1985 -3.5604 -4.6205 20 7 -0.7255 -3.4285 -5.8119 21 6 -1.4554 -4.4031 -6.2508 22 6 -2.1406 -4.4280 -7.5928 23 1 -2.9199 -5.1900 -7.6060 24 6 -1.1132 -4.6899 -8.7162 25 6 -1.6030 -3.8076 -9.8862 26 6 -2.8681 -3.1164 -9.3310 27 8 -2.6975 -3.1307 -7.8972 28 16 -1.5267 -5.6610 -5.0953 29 1 -0.4849 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 3.0425 -4.9317 1.4311 32 1 2.9716 -3.2164 1.9011 33 1 1.3829 -4.5352 3.1024 34 1 1.7558 -5.6746 -0.6908 35 1 0.3133 -4.9200 0.0291 36 1 1.0064 -3.4750 -2.2964 37 1 0.4251 -2.8038 -4.1677 38 1 -0.1155 -4.3856 -8.4000 39 1 -1.1182 -5.7422 -9.0006 40 1 -0.8475 -3.0669 -10.1483 41 1 -1.8496 -4.4229 -10.7514 42 1 -2.9315 -2.0913 -9.6958 43 1 -3.7605 -3.6748 -9.6134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507245599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:24 Heat of formation + Delta-G solvation = -96.686220 kcal Electronic energy + Delta-G solvation = -26876.133876 eV Core-core repulsion = 22854.639759 eV Total energy + Delta-G solvation = -4021.494117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.44164 -40.65797 -39.74633 -38.59134 -36.41421 -35.27156 -33.52007 -33.13402 -32.47443 -30.54045 -29.60549 -26.92433 -26.24873 -25.58563 -24.14629 -22.71366 -22.24430 -21.67146 -20.56606 -19.67136 -19.27096 -18.40799 -18.14633 -17.44902 -17.11463 -16.70574 -16.58019 -16.42650 -16.17540 -15.78431 -15.54797 -15.25178 -15.05756 -14.89918 -14.67306 -14.55223 -14.36338 -14.08247 -13.68613 -13.05009 -12.78026 -12.75060 -12.73046 -12.67879 -12.63272 -12.29484 -12.25405 -11.92581 -11.74926 -11.61182 -11.55690 -10.97094 -10.91318 -10.72144 -10.69721 -10.61880 -10.20119 -9.96932 -9.01116 -7.89958 -5.19361 -0.95101 -0.04527 0.47233 1.28085 1.49983 1.51395 1.57523 2.01919 2.20579 2.57759 2.76178 3.03658 3.42313 3.58659 3.62075 3.68693 3.70886 3.89244 3.92559 3.98713 4.05921 4.14417 4.24177 4.36383 4.43029 4.55885 4.61077 4.67910 4.82031 4.84246 4.88002 4.95879 4.99893 5.05583 5.16303 5.21359 5.36533 5.55081 5.78345 6.28143 6.37135 6.51053 7.00120 7.08162 7.36784 8.08939 8.33935 9.32370 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.002912 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.579000 B = 9614.575138 C =11583.595043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.070 4.070 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.304 1.304 6 H -0.281 1.281 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.723 5.723 10 C 0.160 3.840 11 H 0.082 0.918 12 C 0.065 3.935 13 O -0.584 6.584 14 C 0.130 3.870 15 N -0.696 5.696 16 C 0.592 3.408 17 O -0.577 6.577 18 C -0.314 4.314 19 C 0.100 3.900 20 N -0.481 5.481 21 C 0.037 3.963 22 C 0.144 3.856 23 H 0.122 0.878 24 C -0.140 4.140 25 C -0.146 4.146 26 C 0.035 3.965 27 O -0.387 6.387 28 S 0.277 5.723 29 H 0.247 0.753 30 H 0.372 0.628 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.386 0.614 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.411 0.589 37 H 0.186 0.814 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 -14.099 -18.120 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.797 3.203 4 H -0.202 1.202 5 H -0.231 1.231 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.100 0.900 9 N -0.363 5.363 10 C 0.051 3.949 11 H 0.100 0.900 12 C -0.016 4.016 13 O -0.391 6.391 14 C 0.006 3.994 15 N -0.346 5.346 16 C 0.378 3.622 17 O -0.459 6.459 18 C -0.439 4.439 19 C -0.060 4.060 20 N -0.196 5.196 21 C -0.237 4.237 22 C 0.083 3.917 23 H 0.139 0.861 24 C -0.180 4.180 25 C -0.183 4.183 26 C -0.041 4.041 27 O -0.307 6.307 28 S 0.536 5.464 29 H 0.056 0.944 30 H 0.204 0.796 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.234 0.766 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.248 0.752 37 H 0.203 0.797 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.583 -14.965 -18.543 23.881 hybrid contribution 0.997 2.316 1.314 2.843 sum -0.586 -12.649 -17.229 21.382 Atomic orbital electron populations 1.69834 1.06659 1.25791 1.59296 1.25478 0.96090 1.00821 1.03907 0.85310 0.77122 0.79725 0.78129 1.20151 1.23086 1.20720 1.19565 0.91487 0.84759 1.41030 0.89968 1.42488 1.05362 1.00239 1.88230 1.20880 0.95127 0.85194 0.93698 0.90003 1.22871 0.86552 0.98705 0.93463 1.86523 1.32893 1.92064 1.27634 1.21506 0.98799 0.97544 0.81585 1.45750 1.49644 1.21378 1.17836 1.16860 0.78292 0.83898 0.83184 1.90781 1.58757 1.23430 1.72909 1.25791 1.13435 1.02296 1.02363 1.22410 0.98362 0.95680 0.89503 1.66095 1.10867 1.28862 1.13765 1.27789 0.99552 0.94352 1.02052 1.21804 0.95009 0.88059 0.86800 0.86065 1.23029 0.98393 1.03048 0.93482 1.22932 0.97559 0.99363 0.98484 1.23716 0.98440 1.03019 0.78975 1.89268 1.83621 1.33214 1.24583 1.83559 1.41496 1.17314 1.04005 0.94372 0.79625 0.91422 0.94467 0.76643 0.89621 0.92635 0.75224 0.79732 0.91737 0.86803 0.90878 0.87289 0.88415 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.45 13.06 21.65 0.28 -58.16 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 3 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.24 -12.23 9.93 84.04 0.83 -11.39 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.72 -34.09 4.51 -322.94 -1.46 -35.55 16 10 C 0.16 5.79 2.84 44.99 0.13 5.92 16 11 H 0.08 2.73 8.08 -2.38 -0.02 2.71 16 12 C 0.06 2.08 6.86 71.98 0.49 2.57 16 13 O -0.58 -19.97 12.64 -148.98 -1.88 -21.85 16 14 C 0.13 4.50 5.12 86.38 0.44 4.95 16 15 N -0.70 -24.29 5.37 -467.09 -2.51 -26.80 16 16 C 0.59 21.22 7.79 86.45 0.67 21.89 16 17 O -0.58 -23.31 16.97 -4.30 -0.07 -23.39 16 18 C -0.31 -9.92 6.48 23.88 0.15 -9.76 16 19 C 0.10 3.12 10.93 84.23 0.92 4.05 16 20 N -0.48 -14.93 10.47 -190.30 -1.99 -16.92 16 21 C 0.04 0.93 6.24 88.46 0.55 1.48 16 22 C 0.14 2.70 3.80 30.35 0.12 2.81 16 23 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 24 C -0.14 -1.90 6.62 31.61 0.21 -1.69 16 25 C -0.15 -1.55 7.09 31.61 0.22 -1.32 16 26 C 0.03 0.48 7.63 72.49 0.55 1.03 16 27 O -0.39 -9.13 11.30 -148.98 -1.68 -10.82 16 28 S 0.28 6.80 23.01 -56.49 -1.30 5.50 16 29 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.37 20.04 7.80 -92.71 -0.72 19.32 16 31 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.39 9.18 9.12 -74.06 -0.68 8.50 16 34 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.06 2.22 7.39 -2.39 -0.02 2.20 16 36 H 0.41 14.36 6.85 -92.71 -0.63 13.73 16 37 H 0.19 5.62 7.15 -2.91 -0.02 5.59 16 38 H 0.06 1.14 7.86 -2.39 -0.02 1.13 16 39 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -75.13 378.69 -3.77 -78.91 By element: Atomic # 1 Polarization: 45.84 SS G_CDS: -0.96 Total: 44.88 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 5.77 Total: 17.10 kcal Atomic # 7 Polarization: -131.76 SS G_CDS: -5.67 Total: -137.43 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -3.64 Total: -56.06 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 6.80 SS G_CDS: -1.30 Total: 5.50 kcal Total: -75.13 -3.77 -78.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507245599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.778 kcal (2) G-P(sol) polarization free energy of solvation -75.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds