Wall clock time and date at job start Sat Apr 11 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41260 * 128.07788 * 2 1 4 4 N 1.30133 * 106.59057 * 180.24898 * 3 2 1 5 5 O 1.20883 * 111.98076 * 359.76341 * 4 3 2 6 6 C 1.34639 * 111.47003 * 0.02562 * 5 4 3 7 7 C 1.47510 * 126.94734 * 179.97438 * 6 5 4 8 8 O 1.21580 * 120.00446 * 180.02562 * 7 6 5 9 9 N 1.34781 * 120.00056 * 0.02764 * 7 6 5 10 10 C 1.46498 * 120.00367 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47113 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47140 * 294.99606 * 11 10 9 13 13 C 1.53006 * 109.47164 * 174.99658 * 11 10 9 14 14 N 1.46500 * 109.47204 * 54.99733 * 11 10 9 15 15 C 1.46505 * 120.00078 * 60.00024 * 14 11 10 16 16 C 1.34771 * 120.00141 * 239.99880 * 14 11 10 17 17 O 1.21281 * 120.00208 * 359.97438 * 16 14 11 18 18 C 1.50699 * 120.00070 * 180.02562 * 16 14 11 19 19 S 1.81001 * 109.47249 * 180.02562 * 18 16 14 20 20 C 1.76192 * 100.00228 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00179 * 359.97438 * 20 19 18 22 22 C 1.38804 * 120.00206 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99833 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00008 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47378 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47199 * 120.00508 * 24 22 20 27 27 H 1.48499 * 109.47189 * 240.00371 * 24 22 20 28 28 H 1.08998 * 109.46918 * 270.14292 * 1 2 3 29 29 H 1.09000 * 109.46730 * 30.13781 * 1 2 3 30 30 H 1.09001 * 109.46940 * 150.13788 * 1 2 3 31 31 H 1.08001 * 126.70973 * 0.02562 * 3 2 1 32 32 H 0.97004 * 119.99479 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.47421 * 59.99558 * 10 9 7 34 34 H 1.09006 * 109.46474 * 299.99792 * 10 9 7 35 35 H 1.09001 * 109.47002 * 59.99738 * 13 11 10 36 36 H 1.08993 * 109.46955 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.47050 * 300.00004 * 13 11 10 38 38 H 1.09004 * 109.47130 * 89.99894 * 15 14 11 39 39 H 1.08997 * 109.47212 * 209.99646 * 15 14 11 40 40 H 1.09003 * 109.46772 * 330.00259 * 15 14 11 41 41 H 1.08999 * 109.47401 * 300.00043 * 18 16 14 42 42 H 1.09002 * 109.47014 * 60.00321 * 18 16 14 43 43 H 0.97001 * 120.00119 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5891 0.6353 -0.0054 5 8 3.5995 -0.5735 -0.0041 6 6 2.3509 -1.0771 0.0021 7 6 1.9695 -2.5020 0.0050 8 8 0.7952 -2.8171 0.0102 9 7 2.9228 -3.4548 0.0018 10 6 2.5441 -4.8700 0.0040 11 6 3.8057 -5.7355 -0.0010 12 1 4.3470 -5.5834 -0.9348 13 6 3.4139 -7.2090 0.1271 14 7 4.6615 -5.3579 1.1265 15 6 4.1591 -5.4726 2.4980 16 6 5.9109 -4.9052 0.9022 17 8 6.3270 -4.8107 -0.2330 18 6 6.7914 -4.5173 2.0621 19 16 8.3947 -3.9529 1.4402 20 6 9.1974 -3.5744 2.9624 21 1 8.6771 -3.7188 3.8978 22 6 10.4984 -3.0907 2.9595 23 7 11.1324 -2.9143 1.8195 24 14 11.3490 -2.6888 4.5732 25 1 10.4275 -2.9723 5.7027 26 1 12.5702 -3.5225 4.7102 27 1 11.7259 -1.2525 4.5899 28 1 -0.3633 0.0026 1.0277 29 1 -0.3633 0.8888 -0.5160 30 1 -0.3633 -0.8912 -0.5117 31 1 2.0948 2.1541 0.0004 32 1 3.8597 -3.2034 -0.0027 33 1 1.9503 -5.0887 -0.8835 34 1 1.9573 -5.0876 0.8965 35 1 2.7772 -7.4899 -0.7118 36 1 4.3127 -7.8255 0.1240 37 1 2.8726 -7.3611 1.0609 38 1 4.3923 -6.4631 2.8887 39 1 4.6322 -4.7150 3.1227 40 1 3.0791 -5.3251 2.5028 41 1 6.3172 -3.7136 2.6255 42 1 6.9367 -5.3801 2.7123 43 1 12.0415 -2.5759 1.8174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509056552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:40 Heat of formation + Delta-G solvation = -31.240849 kcal Electronic energy + Delta-G solvation = -27459.372642 eV Core-core repulsion = 23440.716450 eV Total energy + Delta-G solvation = -4018.656193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.10193 -41.37569 -40.51370 -37.77734 -35.99246 -35.29461 -34.58058 -33.65133 -32.93355 -30.22404 -29.49818 -27.83294 -27.65501 -27.50139 -24.86022 -23.38278 -22.74631 -21.69726 -20.53027 -19.69625 -19.47934 -18.88720 -18.31545 -17.56263 -17.05517 -16.89606 -16.84351 -16.59140 -16.31480 -15.85484 -15.63470 -14.86847 -14.62266 -14.56188 -14.52408 -14.23198 -14.17294 -13.95112 -13.79690 -13.61737 -13.46244 -13.27142 -13.14784 -13.04867 -12.92578 -12.80145 -12.57678 -12.29860 -11.97569 -11.68927 -11.51603 -11.47169 -11.15714 -10.87693 -10.65081 -10.25149 -10.22746 -9.74511 -8.65096 -8.34642 -6.11633 -0.34524 1.03660 1.25699 1.40462 1.44833 1.50912 1.56013 1.56855 1.79608 2.02104 2.17172 2.27531 2.99700 3.16693 3.26871 3.48558 3.55293 3.65573 3.81170 3.95145 4.06962 4.15979 4.25315 4.27704 4.29025 4.48376 4.57603 4.64691 4.71964 4.74872 4.77847 4.79370 4.91869 4.94162 5.05120 5.08879 5.27677 5.32444 5.42173 5.57714 6.07687 6.19713 6.23454 6.72742 6.99222 7.07106 7.13031 8.74631 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.003306 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.453807 B = 8468.680336 C =10502.519763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.114 4.114 3 C -0.005 4.005 4 N -0.370 5.370 5 O 0.095 5.905 6 C -0.119 4.119 7 C 0.611 3.389 8 O -0.529 6.529 9 N -0.709 5.709 10 C 0.113 3.887 11 C 0.123 3.877 12 H 0.086 0.914 13 C -0.149 4.149 14 N -0.604 5.604 15 C 0.069 3.931 16 C 0.533 3.467 17 O -0.559 6.559 18 C -0.126 4.126 19 S -0.148 6.148 20 C -0.544 4.544 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.996 3.004 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.275 1.275 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.236 0.764 32 H 0.405 0.595 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.109 -1.239 0.202 26.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C -0.183 4.183 4 N -0.073 5.073 5 O 0.025 5.975 6 C -0.184 4.184 7 C 0.396 3.604 8 O -0.407 6.407 9 N -0.359 5.359 10 C -0.010 4.010 11 C 0.019 3.981 12 H 0.105 0.895 13 C -0.207 4.207 14 N -0.339 5.339 15 C -0.073 4.073 16 C 0.321 3.679 17 O -0.437 6.437 18 C -0.277 4.277 19 S 0.079 5.921 20 C -0.692 4.692 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.201 1.201 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.252 0.748 32 H 0.240 0.760 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.998 -0.786 -1.550 25.059 hybrid contribution 0.489 0.325 1.874 1.964 sum -24.510 -0.461 0.324 24.516 Atomic orbital electron populations 1.20417 0.84256 1.04864 1.04274 1.22090 1.00207 0.89610 0.99986 1.25696 0.86571 1.03749 1.02238 1.73852 1.24941 0.91317 1.17147 1.85021 1.28771 1.15831 1.67905 1.24235 0.85095 0.96834 1.12246 1.16423 0.85395 0.81647 0.76979 1.90812 1.17324 1.80968 1.51599 1.45961 1.09836 1.07103 1.72975 1.22008 0.96617 0.77568 1.04791 1.21445 0.89951 0.96170 0.90488 0.89547 1.22002 1.02384 0.91687 1.04605 1.47911 1.12323 1.64842 1.08833 1.22050 1.01466 1.03248 0.80515 1.20080 0.82240 0.76233 0.89346 1.90699 1.73730 1.54453 1.24795 1.23386 0.98951 1.05041 1.00286 1.85549 1.08226 1.84434 1.13871 1.23217 1.02218 1.50654 0.93131 0.90077 1.26098 0.97095 0.94480 1.01435 1.70187 1.12833 1.43822 1.27855 0.84940 0.78024 0.77958 0.77254 1.18021 1.19887 1.20082 0.89079 0.87974 0.90401 0.74789 0.75953 0.88455 0.88712 0.89078 0.92717 0.89933 0.90607 0.91023 0.88654 0.87769 0.87596 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 9.95 71.24 0.71 -0.37 16 2 C -0.11 -2.25 6.37 -19.45 -0.12 -2.37 16 3 C 0.00 -0.09 12.14 85.69 1.04 0.95 16 4 N -0.37 -10.37 12.04 -58.55 -0.71 -11.07 16 5 O 0.09 2.75 11.04 65.86 0.73 3.48 16 6 C -0.12 -2.91 7.29 24.39 0.18 -2.73 16 7 C 0.61 14.43 7.82 86.69 0.68 15.11 16 8 O -0.53 -13.27 15.11 -3.97 -0.06 -13.33 16 9 N -0.71 -15.51 5.38 -466.30 -2.51 -18.02 16 10 C 0.11 1.85 4.92 86.38 0.42 2.27 16 11 C 0.12 2.32 2.80 44.99 0.13 2.45 16 12 H 0.09 2.14 6.90 -2.39 -0.02 2.12 16 13 C -0.15 -1.92 9.19 71.98 0.66 -1.25 16 14 N -0.60 -13.96 2.24 -822.57 -1.85 -15.80 16 15 C 0.07 1.10 9.30 127.77 1.19 2.29 16 16 C 0.53 18.60 7.40 87.66 0.65 19.25 16 17 O -0.56 -24.33 15.19 -3.03 -0.05 -24.38 16 18 C -0.13 -4.88 4.71 71.24 0.34 -4.54 16 19 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 20 C -0.54 -31.05 9.50 67.96 0.65 -30.40 16 21 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -56.10 13.22 21.65 0.29 -55.82 16 24 Si 1.00 43.83 29.55 68.60 2.03 45.85 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 28 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 1.26 6.73 -2.39 -0.02 1.25 16 31 H 0.24 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.41 10.45 7.70 -92.71 -0.71 9.74 16 33 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.26 6.88 -2.38 -0.02 1.24 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 0.75 7.67 -2.39 -0.02 0.74 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.25 6.44 -2.39 -0.02 1.24 16 40 H 0.09 1.06 6.53 -2.39 -0.02 1.04 16 41 H 0.10 3.72 7.40 -2.40 -0.02 3.70 16 42 H 0.11 3.75 8.11 -2.39 -0.02 3.73 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -80.37 379.95 4.03 -76.35 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.34 Total: 20.17 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 6.98 Total: 1.89 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -4.78 Total: -100.71 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: 0.62 Total: -34.23 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -80.37 4.03 -76.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509056552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.105 kcal (2) G-P(sol) polarization free energy of solvation -80.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds