Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46964 * 300.00017 * 3 2 1 6 6 H 1.48502 * 109.46801 * 59.99757 * 3 2 1 7 7 C 1.38800 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00169 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00072 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47467 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99700 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.47743 * 125.81887 * 359.90665 * 13 11 10 15 15 C 1.54909 * 104.83995 * 155.82587 * 14 13 11 16 16 C 1.55159 * 101.57990 * 37.09908 * 15 14 13 17 17 H 1.08999 * 110.72303 * 82.85766 * 16 15 14 18 18 N 1.46505 * 110.87023 * 206.06269 * 16 15 14 19 19 C 1.34777 * 119.99732 * 200.06535 * 18 16 15 20 20 O 1.21281 * 119.99982 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00029 * 180.02562 * 19 18 16 22 22 H 1.08999 * 110.43790 * 59.29229 * 21 19 18 23 23 C 1.54628 * 110.48796 * 181.83761 * 21 19 18 24 24 C 1.54688 * 101.67040 * 143.39041 * 23 21 19 25 25 N 1.46757 * 105.53426 * 334.74028 * 24 23 21 26 26 C 1.34422 * 111.30277 * 16.92157 * 25 24 23 27 27 O 1.21281 * 124.94261 * 179.55500 * 26 25 24 28 28 C 1.47020 * 125.64983 * 179.97438 * 13 11 10 29 29 H 0.96999 * 120.00373 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47228 * 60.00102 * 10 9 7 31 31 H 1.08999 * 109.46922 * 300.00118 * 10 9 7 32 32 H 1.09003 * 110.29227 * 37.02448 * 14 13 11 33 33 H 1.08996 * 110.53057 * 274.75660 * 14 13 11 34 34 H 1.08994 * 111.00889 * 279.01887 * 15 14 13 35 35 H 1.09001 * 111.03628 * 155.18095 * 15 14 13 36 36 H 0.96988 * 120.00081 * 20.05636 * 18 16 15 37 37 H 1.09001 * 110.96752 * 261.59202 * 23 21 19 38 38 H 1.09007 * 110.97188 * 25.35337 * 23 21 19 39 39 H 1.08999 * 110.29721 * 215.67910 * 24 23 21 40 40 H 1.09005 * 110.21064 * 93.75488 * 24 23 21 41 41 H 0.97006 * 124.35347 * 196.89861 * 25 24 23 42 42 H 1.09002 * 109.88367 * 61.60808 * 28 13 11 43 43 H 1.09000 * 109.88319 * 300.59426 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0007 14 6 4.3185 -6.2491 -0.0028 15 6 4.8023 -7.5868 0.6104 16 6 3.7710 -8.5882 0.0264 17 1 4.0564 -8.8925 -0.9806 18 7 3.6271 -9.7570 0.8979 19 6 3.1153 -10.9037 0.4082 20 8 2.7735 -10.9677 -0.7536 21 6 2.9668 -12.1059 1.3047 22 1 2.3212 -11.8720 2.1512 23 6 2.4037 -13.3071 0.5104 24 6 3.1682 -14.4905 1.1490 25 7 4.4082 -13.9151 1.6829 26 6 4.3211 -12.5777 1.7862 27 8 5.2001 -11.8547 2.2051 28 6 2.4665 -7.7640 -0.0009 29 1 -0.4851 0.8400 -0.0004 30 1 3.1244 -3.7314 0.8906 31 1 3.1244 -3.7313 -0.8894 32 1 4.6447 -5.4101 0.6119 33 1 4.6932 -6.1408 -1.0206 34 1 4.7479 -7.5601 1.6987 35 1 5.8120 -7.8274 0.2776 36 1 3.9003 -9.7057 1.8270 37 1 1.3291 -13.4064 0.6630 38 1 2.6390 -13.2182 -0.5503 39 1 3.3961 -15.2443 0.3953 40 1 2.5787 -14.9291 1.9542 41 1 5.1902 -14.4333 1.9299 42 1 1.8998 -7.9970 -0.9024 43 1 1.8676 -7.9885 0.8817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524213909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -99.373825 kcal Electronic energy + Delta-G solvation = -26606.062667 eV Core-core repulsion = 22584.452007 eV Total energy + Delta-G solvation = -4021.610660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.42163 -40.03412 -39.03628 -37.33222 -36.82209 -34.42056 -32.42176 -32.24530 -30.91188 -29.69109 -28.71245 -27.53554 -25.48080 -23.85948 -22.85162 -22.18326 -21.17467 -20.37308 -19.31790 -18.09262 -17.83611 -17.63291 -17.13721 -16.79058 -16.39280 -15.73564 -15.17492 -15.10993 -14.82617 -14.79381 -14.34711 -14.19563 -14.15519 -13.86332 -13.66269 -13.41867 -13.22322 -12.85560 -12.58518 -12.55398 -12.38225 -12.05578 -11.86065 -11.76773 -11.74202 -11.11370 -11.05856 -11.00510 -10.75298 -10.57174 -10.28000 -9.80416 -9.74997 -9.56016 -9.31749 -9.06557 -8.51345 -8.21599 -6.49203 -6.20765 -3.91319 1.81057 2.17093 2.56181 2.82965 3.02122 3.08701 3.22374 3.27629 3.32318 3.62649 3.65803 3.77355 4.13165 4.20909 4.26585 4.35039 4.36944 4.58170 4.73863 4.76711 4.93025 4.98789 5.08849 5.12506 5.14486 5.26491 5.46485 5.50007 5.52166 5.60682 5.67041 5.74706 5.83448 5.93580 6.09293 6.13356 6.15097 6.33376 6.40358 7.09599 7.57721 7.60691 7.65671 7.78790 8.36398 8.56710 9.24565 10.86745 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.034370 B = 0.001855 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.457789 B =15090.933452 C =15558.999627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.549 3.451 12 O -0.514 6.514 13 N -0.626 5.626 14 C 0.103 3.897 15 C -0.137 4.137 16 C 0.135 3.865 17 H 0.105 0.895 18 N -0.707 5.707 19 C 0.534 3.466 20 O -0.528 6.528 21 C -0.152 4.152 22 H 0.138 0.862 23 C -0.118 4.118 24 C 0.098 3.902 25 N -0.727 5.727 26 C 0.530 3.470 27 O -0.520 6.520 28 C 0.100 3.900 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.409 0.591 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.415 0.585 42 H 0.073 0.927 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.190 -30.747 3.897 32.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.388 6.388 13 N -0.364 5.364 14 C -0.021 4.021 15 C -0.176 4.176 16 C 0.029 3.971 17 H 0.123 0.877 18 N -0.359 5.359 19 C 0.318 3.682 20 O -0.404 6.404 21 C -0.177 4.177 22 H 0.156 0.844 23 C -0.156 4.156 24 C -0.026 4.026 25 N -0.383 5.383 26 C 0.315 3.685 27 O -0.395 6.395 28 C -0.024 4.024 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.246 0.754 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.254 0.746 42 H 0.091 0.909 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.295 -30.449 3.244 32.001 hybrid contribution 2.373 0.969 0.647 2.643 sum 11.668 -29.481 3.891 31.944 Atomic orbital electron populations 1.70026 1.05956 1.27344 1.46938 1.24997 0.95029 0.99038 0.94554 0.86112 0.79585 0.81871 0.77892 1.19605 1.20561 1.20579 1.22902 0.94942 0.91583 1.58832 0.90852 1.85420 1.04964 0.96352 1.96704 1.23506 1.06484 0.94841 1.04842 1.20049 0.85654 0.85383 0.75188 1.90717 1.14953 1.85097 1.48017 1.48519 1.06612 1.05342 1.75974 1.22331 0.80425 0.97912 1.01430 1.23071 0.99063 0.93758 1.01686 1.21996 0.94786 0.84632 0.95649 0.87658 1.45878 1.63925 1.10980 1.15086 1.19752 0.77110 0.83515 0.87838 1.90744 1.48912 1.83559 1.17157 1.22192 0.98084 0.96057 1.01355 0.84405 1.22673 1.01249 0.90174 1.01521 1.22227 0.84982 0.96698 0.98732 1.46115 1.17975 1.07794 1.66426 1.20305 0.88115 0.82873 0.77253 1.90798 1.43761 1.58603 1.46378 1.22211 0.96503 0.80796 1.02924 0.92235 0.89247 0.89204 0.89672 0.90802 0.89695 0.88935 0.75432 0.88222 0.87912 0.89599 0.90464 0.74607 0.90854 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.04 5.17 36.00 0.19 -2.85 16 11 C 0.55 10.93 7.87 -10.99 -0.09 10.84 16 12 O -0.51 -12.35 16.19 5.55 0.09 -12.26 16 13 N -0.63 -9.36 3.34 -170.26 -0.57 -9.92 16 14 C 0.10 1.09 6.71 -2.35 -0.02 1.07 16 15 C -0.14 -1.13 6.70 -24.58 -0.16 -1.29 16 16 C 0.13 1.35 3.23 -66.09 -0.21 1.14 16 17 H 0.11 1.12 7.69 -51.93 -0.40 0.72 16 18 N -0.71 -6.39 4.84 -52.03 -0.25 -6.65 16 19 C 0.53 5.17 7.14 -10.99 -0.08 5.09 16 20 O -0.53 -6.77 15.23 5.56 0.08 -6.69 16 21 C -0.15 -0.95 3.32 -91.78 -0.30 -1.26 16 22 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 23 C -0.12 -0.50 6.48 -24.99 -0.16 -0.67 16 24 C 0.10 0.22 7.79 -3.01 -0.02 0.20 16 25 N -0.73 -3.22 6.24 -59.09 -0.37 -3.59 16 26 C 0.53 3.96 7.85 -10.86 -0.09 3.87 16 27 O -0.52 -5.60 16.99 5.56 0.09 -5.51 16 28 C 0.10 1.33 6.61 -3.07 -0.02 1.31 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.09 1.71 7.86 -51.91 -0.41 1.30 16 31 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 32 H 0.08 0.86 7.50 -51.93 -0.39 0.47 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.66 8.01 -51.93 -0.42 0.24 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.41 3.19 7.89 -40.82 -0.32 2.87 16 37 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.10 0.63 7.03 -51.93 -0.36 0.27 16 39 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 41 H 0.41 1.26 8.96 -40.82 -0.37 0.90 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -39.04 375.59 -8.54 -47.58 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.01 Total: -0.03 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.77 Total: 4.41 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.46 Total: -45.77 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.27 Total: -24.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.04 -8.54 -47.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524213909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.794 kcal (2) G-P(sol) polarization free energy of solvation -39.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds