Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46964 * 300.00017 * 3 2 1 6 6 H 1.48502 * 109.46801 * 59.99757 * 3 2 1 7 7 C 1.38800 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00169 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00072 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47467 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99700 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.47743 * 125.81887 * 359.90665 * 13 11 10 15 15 C 1.54909 * 104.83995 * 155.82587 * 14 13 11 16 16 C 1.55159 * 101.57990 * 37.09908 * 15 14 13 17 17 H 1.08999 * 110.72303 * 82.85766 * 16 15 14 18 18 N 1.46505 * 110.87023 * 206.06269 * 16 15 14 19 19 C 1.34777 * 119.99732 * 200.06535 * 18 16 15 20 20 O 1.21281 * 119.99982 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00029 * 180.02562 * 19 18 16 22 22 H 1.08999 * 110.43790 * 59.29229 * 21 19 18 23 23 C 1.54628 * 110.48796 * 181.83761 * 21 19 18 24 24 C 1.54688 * 101.67040 * 143.39041 * 23 21 19 25 25 N 1.46757 * 105.53426 * 334.74028 * 24 23 21 26 26 C 1.34422 * 111.30277 * 16.92157 * 25 24 23 27 27 O 1.21281 * 124.94261 * 179.55500 * 26 25 24 28 28 C 1.47020 * 125.64983 * 179.97438 * 13 11 10 29 29 H 0.96999 * 120.00373 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47228 * 60.00102 * 10 9 7 31 31 H 1.08999 * 109.46922 * 300.00118 * 10 9 7 32 32 H 1.09003 * 110.29227 * 37.02448 * 14 13 11 33 33 H 1.08996 * 110.53057 * 274.75660 * 14 13 11 34 34 H 1.08994 * 111.00889 * 279.01887 * 15 14 13 35 35 H 1.09001 * 111.03628 * 155.18095 * 15 14 13 36 36 H 0.96988 * 120.00081 * 20.05636 * 18 16 15 37 37 H 1.09001 * 110.96752 * 261.59202 * 23 21 19 38 38 H 1.09007 * 110.97188 * 25.35337 * 23 21 19 39 39 H 1.08999 * 110.29721 * 215.67910 * 24 23 21 40 40 H 1.09005 * 110.21064 * 93.75488 * 24 23 21 41 41 H 0.97006 * 124.35347 * 196.89861 * 25 24 23 42 42 H 1.09002 * 109.88367 * 61.60808 * 28 13 11 43 43 H 1.09000 * 109.88319 * 300.59426 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0007 14 6 4.3185 -6.2491 -0.0028 15 6 4.8023 -7.5868 0.6104 16 6 3.7710 -8.5882 0.0264 17 1 4.0564 -8.8925 -0.9806 18 7 3.6271 -9.7570 0.8979 19 6 3.1153 -10.9037 0.4082 20 8 2.7735 -10.9677 -0.7536 21 6 2.9668 -12.1059 1.3047 22 1 2.3212 -11.8720 2.1512 23 6 2.4037 -13.3071 0.5104 24 6 3.1682 -14.4905 1.1490 25 7 4.4082 -13.9151 1.6829 26 6 4.3211 -12.5777 1.7862 27 8 5.2001 -11.8547 2.2051 28 6 2.4665 -7.7640 -0.0009 29 1 -0.4851 0.8400 -0.0004 30 1 3.1244 -3.7314 0.8906 31 1 3.1244 -3.7313 -0.8894 32 1 4.6447 -5.4101 0.6119 33 1 4.6932 -6.1408 -1.0206 34 1 4.7479 -7.5601 1.6987 35 1 5.8120 -7.8274 0.2776 36 1 3.9003 -9.7057 1.8270 37 1 1.3291 -13.4064 0.6630 38 1 2.6390 -13.2182 -0.5503 39 1 3.3961 -15.2443 0.3953 40 1 2.5787 -14.9291 1.9542 41 1 5.1902 -14.4333 1.9299 42 1 1.8998 -7.9970 -0.9024 43 1 1.8676 -7.9885 0.8817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524213909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -131.142974 kcal Electronic energy + Delta-G solvation = -26607.440281 eV Core-core repulsion = 22584.452007 eV Total energy + Delta-G solvation = -4022.988274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.02946 -41.11905 -39.99981 -38.49766 -37.39353 -35.39793 -34.59204 -32.88089 -31.96554 -30.91824 -29.45259 -28.42144 -27.64359 -24.87114 -23.49916 -22.62654 -22.04056 -21.07860 -20.68103 -19.63468 -18.59567 -18.31771 -18.18585 -17.87473 -17.28252 -16.89827 -16.82794 -16.49767 -15.98499 -15.64589 -15.57405 -15.29283 -14.91470 -14.72577 -14.57475 -14.48858 -14.20460 -13.96401 -13.73985 -13.60285 -13.33336 -13.16175 -12.98989 -12.91301 -12.73070 -12.67426 -12.60563 -12.12257 -11.92976 -11.71748 -11.23920 -11.16286 -11.06476 -10.98041 -10.29646 -10.28395 -10.10669 -9.79391 -8.69107 -8.35129 -6.14068 1.19391 1.20471 1.41690 1.41838 1.50990 1.51615 1.57322 1.88186 2.20319 2.26668 2.44602 2.99188 3.18236 3.22622 3.29188 3.41102 3.47000 3.78346 3.85625 3.97432 4.01406 4.10465 4.17570 4.21980 4.28401 4.43133 4.49288 4.59774 4.69656 4.72217 4.81116 4.90996 5.00037 5.02239 5.16842 5.22746 5.37502 5.41865 5.73421 5.92784 6.19749 6.29824 6.37595 7.03356 7.05679 7.06243 7.13799 8.74516 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.034370 B = 0.001855 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.457789 B =15090.933452 C =15558.999627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.154 6.154 10 C -0.118 4.118 11 C 0.546 3.454 12 O -0.568 6.568 13 N -0.616 5.616 14 C 0.092 3.908 15 C -0.121 4.121 16 C 0.144 3.856 17 H 0.101 0.899 18 N -0.701 5.701 19 C 0.527 3.473 20 O -0.565 6.565 21 C -0.149 4.149 22 H 0.161 0.839 23 C -0.117 4.117 24 C 0.101 3.899 25 N -0.717 5.717 26 C 0.524 3.476 27 O -0.560 6.560 28 C 0.100 3.900 29 H 0.271 0.729 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.417 0.583 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.422 0.578 42 H 0.051 0.949 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.915 -31.935 4.680 35.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.073 5.927 10 C -0.269 4.269 11 C 0.334 3.666 12 O -0.447 6.447 13 N -0.351 5.351 14 C -0.030 4.030 15 C -0.159 4.159 16 C 0.038 3.962 17 H 0.119 0.881 18 N -0.353 5.353 19 C 0.313 3.687 20 O -0.443 6.443 21 C -0.173 4.173 22 H 0.179 0.821 23 C -0.155 4.155 24 C -0.022 4.022 25 N -0.372 5.372 26 C 0.309 3.691 27 O -0.439 6.439 28 C -0.024 4.024 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.139 0.861 36 H 0.255 0.745 37 H 0.136 0.864 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.263 0.737 42 H 0.069 0.931 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.079 -31.719 4.042 34.181 hybrid contribution 1.548 1.153 0.379 1.967 sum 13.627 -30.565 4.421 33.756 Atomic orbital electron populations 1.70192 1.08036 1.28581 1.48038 1.26159 0.95984 1.03395 0.93706 0.84876 0.78657 0.76166 0.78057 1.17859 1.19974 1.19910 1.23229 0.95395 0.91736 1.58831 0.89711 1.85638 1.10587 0.99382 1.97048 1.23296 1.03454 0.93438 1.06713 1.19880 0.85378 0.86041 0.75283 1.90693 1.17248 1.85795 1.50957 1.48435 1.08357 1.04928 1.73430 1.22748 0.77245 0.99878 1.03148 1.23068 0.99548 0.91197 1.02136 1.21836 0.93313 0.84961 0.96120 0.88089 1.45874 1.63508 1.10554 1.15361 1.20383 0.76092 0.84401 0.87816 1.90729 1.50429 1.84281 1.18879 1.22256 0.98269 0.95131 1.01637 0.82143 1.22716 1.02625 0.90087 1.00120 1.22421 0.83950 0.95965 0.99896 1.46168 1.18969 1.06964 1.65103 1.20479 0.87960 0.83660 0.77044 1.90769 1.44947 1.59708 1.48454 1.22291 0.98323 0.80336 1.01496 0.91981 0.87025 0.87295 0.88440 0.89073 0.88636 0.86137 0.74470 0.86429 0.90049 0.87776 0.87895 0.73740 0.93053 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.57 13.22 21.65 0.29 -56.29 16 2 C 0.01 0.70 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.54 -31.32 9.50 67.95 0.65 -30.68 16 8 H 0.08 4.51 7.80 -2.91 -0.02 4.48 16 9 S -0.15 -8.74 20.57 -56.49 -1.16 -9.90 16 10 C -0.12 -4.86 5.17 71.23 0.37 -4.49 16 11 C 0.55 21.97 7.87 87.66 0.69 22.66 16 12 O -0.57 -28.52 16.19 -3.06 -0.05 -28.57 16 13 N -0.62 -18.01 3.34 -810.98 -2.71 -20.71 16 14 C 0.09 1.70 6.71 86.79 0.58 2.28 16 15 C -0.12 -1.64 6.70 31.99 0.21 -1.43 16 16 C 0.14 2.72 3.23 46.18 0.15 2.87 16 17 H 0.10 2.07 7.69 -2.39 -0.02 2.05 16 18 N -0.70 -12.03 4.84 -436.91 -2.12 -14.15 16 19 C 0.53 9.97 7.14 87.66 0.63 10.60 16 20 O -0.56 -14.68 15.23 -3.03 -0.05 -14.73 16 21 C -0.15 -1.66 3.32 -11.55 -0.04 -1.69 16 22 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 23 C -0.12 -0.81 6.48 31.72 0.21 -0.60 16 24 C 0.10 0.17 7.79 86.91 0.68 0.84 16 25 N -0.72 -4.83 6.24 -459.45 -2.87 -7.69 16 26 C 0.52 7.08 7.85 87.90 0.69 7.77 16 27 O -0.56 -11.53 16.99 -3.03 -0.05 -11.58 16 28 C 0.10 2.68 6.61 86.73 0.57 3.26 16 29 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.11 4.08 7.86 -2.39 -0.02 4.07 16 31 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 32 H 0.10 1.64 7.50 -2.39 -0.02 1.62 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 1.16 8.01 -2.39 -0.02 1.14 16 35 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.42 5.93 7.89 -92.72 -0.73 5.20 16 37 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.08 0.96 7.03 -2.38 -0.02 0.94 16 39 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.10 -0.25 8.14 -2.38 -0.02 -0.27 16 41 H 0.42 1.71 8.96 -92.70 -0.83 0.88 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.74 8.03 -2.39 -0.02 1.72 16 Total: -1.00 -89.52 375.59 -1.34 -90.86 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -0.50 Total: 14.39 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 5.85 Total: 12.55 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -7.40 Total: -98.84 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -0.15 Total: -54.88 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.90 kcal Total: -89.52 -1.34 -90.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524213909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.283 kcal (2) G-P(sol) polarization free energy of solvation -89.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds