Wall clock time and date at job start Sat Apr 11 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30625 * 125.42509 * 2 1 4 4 C 1.33692 * 108.99596 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.27300 * 180.02562 * 4 3 2 6 6 C 1.36347 * 107.45401 * 359.97438 * 4 3 2 7 7 C 1.46718 * 126.63994 * 179.97438 * 6 4 3 8 8 O 1.21678 * 120.00686 * 0.02562 * 7 6 4 9 9 N 1.34783 * 119.99421 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99701 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47174 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47283 * 65.00075 * 11 10 9 13 13 C 1.52998 * 109.47292 * 185.00006 * 11 10 9 14 14 N 1.46496 * 109.47246 * 305.00324 * 11 10 9 15 15 C 1.34777 * 120.00258 * 155.00083 * 14 11 10 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 14 11 17 17 C 1.50706 * 119.99762 * 179.97438 * 15 14 11 18 18 S 1.81003 * 109.46853 * 179.97438 * 17 15 14 19 19 C 1.76196 * 99.99846 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00030 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99637 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99688 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00457 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47357 * 89.99660 * 23 21 19 25 25 H 1.48495 * 109.47496 * 209.99879 * 23 21 19 26 26 H 1.48500 * 109.46916 * 330.00121 * 23 21 19 27 27 O 1.33668 * 125.42441 * 180.29031 * 2 1 3 28 28 H 1.08997 * 109.46940 * 90.02362 * 1 2 3 29 29 H 1.09001 * 109.47290 * 210.02448 * 1 2 3 30 30 H 1.08998 * 109.46840 * 330.02506 * 1 2 3 31 31 H 1.08999 * 109.46938 * 269.97430 * 5 4 3 32 32 H 1.09004 * 109.46769 * 29.97031 * 5 4 3 33 33 H 1.08994 * 109.47416 * 149.97131 * 5 4 3 34 34 H 0.96998 * 120.00048 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.46987 * 60.00085 * 10 9 7 36 36 H 1.09006 * 109.47173 * 299.99977 * 10 9 7 37 37 H 1.09001 * 109.47093 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.47121 * 299.99938 * 13 11 10 39 39 H 1.08994 * 109.47090 * 60.00118 * 13 11 10 40 40 H 0.96999 * 119.99694 * 334.99473 * 14 11 10 41 41 H 1.09000 * 109.47318 * 299.99141 * 17 15 14 42 42 H 1.09000 * 109.47161 * 59.99772 * 17 15 14 43 43 H 0.97002 * 120.00245 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5465 0.6863 -0.0006 5 6 4.7453 1.5995 -0.0002 6 6 3.5708 -0.6769 -0.0003 7 6 4.7636 -1.5313 -0.0013 8 8 5.8719 -1.0291 -0.0020 9 7 4.6316 -2.8727 -0.0004 10 6 5.8225 -3.7259 -0.0008 11 6 5.3970 -5.1955 -0.0003 12 1 4.8783 -5.4240 -0.9314 13 6 6.6355 -6.0850 0.1250 14 7 4.5007 -5.4440 1.1315 15 6 3.6170 -6.4603 1.0809 16 8 3.5634 -7.1689 0.0981 17 6 2.6954 -6.7162 2.2455 18 16 1.6364 -8.1368 1.8760 19 6 0.6914 -8.2085 3.3614 20 1 0.8693 -7.4921 4.1497 21 6 -0.2809 -9.1865 3.5187 22 7 -0.9873 -9.2397 4.6282 23 14 -0.5872 -10.4270 2.1562 24 1 0.2843 -11.6119 2.3604 25 1 -2.0106 -10.8492 2.1818 26 1 -0.2786 -9.8061 0.8430 27 8 2.2817 -1.0892 -0.0055 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 5.0343 1.8200 -1.0278 32 1 4.4949 2.5275 0.5139 33 1 5.5736 1.1116 0.5135 34 1 3.7481 -3.2731 0.0005 35 1 6.4177 -3.5192 0.8886 36 1 6.4164 -3.5203 -0.8914 37 1 6.3324 -7.1320 0.1249 38 1 7.3024 -5.9001 -0.7172 39 1 7.1542 -5.8566 1.0561 40 1 4.5434 -4.8771 1.9175 41 1 3.2863 -6.9254 3.1373 42 1 2.0755 -5.8365 2.4185 43 1 -1.6671 -9.9229 4.7381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526472350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:13 Heat of formation + Delta-G solvation = -61.338448 kcal Electronic energy + Delta-G solvation = -26641.775948 eV Core-core repulsion = 22621.814625 eV Total energy + Delta-G solvation = -4019.961322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.79600 -40.21359 -39.37178 -36.64823 -35.68518 -33.99391 -33.14371 -32.48906 -31.66416 -29.71794 -28.86963 -28.32850 -26.15991 -25.66382 -22.63394 -22.20787 -21.85656 -20.87597 -20.55092 -18.69590 -17.88584 -17.43152 -16.78092 -16.76723 -16.21653 -15.91860 -15.30598 -15.14673 -14.99725 -14.61510 -14.58226 -14.14829 -13.69276 -13.53979 -13.45930 -13.39818 -13.22824 -13.07251 -13.04250 -12.89427 -12.84118 -12.50382 -12.23507 -12.04179 -11.33539 -11.32947 -11.30697 -11.22952 -11.05614 -10.66308 -10.53286 -9.91264 -9.72288 -9.59510 -9.20341 -9.10066 -9.04841 -8.56680 -6.98010 -6.33777 -4.06150 0.43280 2.00267 2.01549 2.62048 2.69939 2.73660 2.85241 3.22081 3.29300 3.45532 3.50508 3.57461 4.22223 4.28122 4.32825 4.34145 4.66375 4.75856 4.85319 4.93698 4.96658 4.97102 5.05283 5.14025 5.20138 5.24687 5.29394 5.32360 5.33955 5.47158 5.52161 5.63278 5.67580 5.76936 5.82126 5.93475 5.96732 6.04568 6.39284 6.88998 7.24944 7.45049 7.60840 7.89198 8.35208 8.36838 9.12191 10.75451 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.002694 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.942635 B =10389.955620 C =12340.029612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.230 3.770 3 N -0.493 5.493 4 C 0.087 3.913 5 C -0.081 4.081 6 C -0.128 4.128 7 C 0.613 3.387 8 O -0.515 6.515 9 N -0.717 5.717 10 C 0.113 3.887 11 C 0.132 3.868 12 H 0.096 0.904 13 C -0.161 4.161 14 N -0.737 5.737 15 C 0.533 3.467 16 O -0.515 6.515 17 C -0.125 4.125 18 S -0.140 6.140 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 O -0.187 6.187 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.410 0.590 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.790 19.385 -9.754 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.024 3.976 3 N -0.223 5.223 4 C -0.037 4.037 5 C -0.138 4.138 6 C -0.183 4.183 7 C 0.399 3.601 8 O -0.393 6.393 9 N -0.369 5.369 10 C -0.011 4.011 11 C 0.026 3.974 12 H 0.115 0.885 13 C -0.220 4.220 14 N -0.392 5.392 15 C 0.319 3.681 16 O -0.389 6.389 17 C -0.276 4.276 18 S 0.086 5.914 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 O -0.074 6.074 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.246 0.754 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.235 0.765 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.095 18.978 -11.299 24.717 hybrid contribution -0.517 -0.466 1.246 1.427 sum 10.577 18.512 -10.053 23.572 Atomic orbital electron populations 1.20459 0.80473 1.06000 1.05366 1.26656 0.96773 0.78437 0.95692 1.70393 1.01544 1.29912 1.20486 1.22099 0.93559 0.91208 0.96870 1.20403 0.92146 0.97523 1.03752 1.22757 0.82495 0.95104 1.17969 1.16250 0.85516 0.81458 0.76872 1.90861 1.23723 1.73904 1.50833 1.45890 1.11147 1.05341 1.74545 1.21824 0.87258 0.88088 1.03949 1.21163 0.91950 0.92566 0.91703 0.88549 1.22112 0.96539 1.00966 1.02365 1.46127 1.38577 1.34245 1.20249 1.20316 0.79796 0.79450 0.88568 1.90709 1.68869 1.46081 1.33253 1.23291 1.00446 1.04812 0.99047 1.84790 1.42927 1.36410 1.27261 1.22305 1.22741 1.20437 1.01495 0.89400 1.24719 0.94231 0.96695 0.95670 1.69938 1.22219 1.34269 1.25192 0.86732 0.78464 0.82539 0.84090 1.19201 1.19919 1.15940 1.84472 1.16045 1.37364 1.69492 0.88187 0.88409 0.87548 0.89935 0.90362 0.88620 0.75410 0.90157 0.89389 0.90979 0.91356 0.92017 0.76545 0.88447 0.88503 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.51 36.00 0.38 0.02 16 2 C 0.23 2.25 8.32 -12.79 -0.11 2.15 16 3 N -0.49 -5.62 11.26 -7.07 -0.08 -5.70 16 4 C 0.09 0.99 7.16 -82.46 -0.59 0.40 16 5 C -0.08 -0.73 9.87 36.01 0.36 -0.37 16 6 C -0.13 -1.47 7.18 -36.84 -0.26 -1.73 16 7 C 0.61 6.80 7.79 -12.83 -0.10 6.70 16 8 O -0.52 -6.51 14.79 5.21 0.08 -6.44 16 9 N -0.72 -6.63 5.38 -61.61 -0.33 -6.96 16 10 C 0.11 0.90 5.23 -4.04 -0.02 0.87 16 11 C 0.13 1.23 2.73 -67.93 -0.19 1.04 16 12 H 0.10 1.05 7.58 -51.93 -0.39 0.66 16 13 C -0.16 -1.41 9.48 37.16 0.35 -1.06 16 14 N -0.74 -8.03 4.52 -53.81 -0.24 -8.28 16 15 C 0.53 8.50 7.81 -10.98 -0.09 8.41 16 16 O -0.52 -10.13 15.52 5.56 0.09 -10.04 16 17 C -0.13 -2.27 6.16 36.01 0.22 -2.05 16 18 S -0.14 -3.42 18.55 -107.50 -1.99 -5.41 16 19 C -0.52 -14.66 10.04 30.94 0.31 -14.35 16 20 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 21 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 22 N -0.88 -26.12 13.97 55.49 0.78 -25.35 16 23 Si 0.86 21.33 27.74 -169.99 -4.72 16.61 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 27 O -0.19 -2.04 10.57 4.42 0.05 -2.00 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.90 6.47 -51.93 -0.34 0.56 16 34 H 0.41 3.81 7.93 -40.82 -0.32 3.48 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.40 3.54 8.60 -40.82 -0.35 3.19 16 41 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 42 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -35.41 385.67 -6.45 -41.86 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.05 Total: 3.20 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 0.17 Total: 2.68 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.12 Total: -46.29 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.21 Total: -18.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.72 Total: 16.61 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.41 -6.45 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526472350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.478 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds