Wall clock time and date at job start Sat Apr 11 2020 06:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30625 * 125.42509 * 2 1 4 4 C 1.33692 * 108.99596 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.27300 * 180.02562 * 4 3 2 6 6 C 1.36347 * 107.45401 * 359.97438 * 4 3 2 7 7 C 1.46718 * 126.63994 * 179.97438 * 6 4 3 8 8 O 1.21678 * 120.00686 * 0.02562 * 7 6 4 9 9 N 1.34783 * 119.99421 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99701 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47174 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47283 * 65.00075 * 11 10 9 13 13 C 1.52998 * 109.47292 * 185.00006 * 11 10 9 14 14 N 1.46496 * 109.47246 * 305.00324 * 11 10 9 15 15 C 1.34777 * 120.00258 * 155.00083 * 14 11 10 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 14 11 17 17 C 1.50706 * 119.99762 * 179.97438 * 15 14 11 18 18 S 1.81003 * 109.46853 * 179.97438 * 17 15 14 19 19 C 1.76196 * 99.99846 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00030 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99637 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99688 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00457 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47357 * 89.99660 * 23 21 19 25 25 H 1.48495 * 109.47496 * 209.99879 * 23 21 19 26 26 H 1.48500 * 109.46916 * 330.00121 * 23 21 19 27 27 O 1.33668 * 125.42441 * 180.29031 * 2 1 3 28 28 H 1.08997 * 109.46940 * 90.02362 * 1 2 3 29 29 H 1.09001 * 109.47290 * 210.02448 * 1 2 3 30 30 H 1.08998 * 109.46840 * 330.02506 * 1 2 3 31 31 H 1.08999 * 109.46938 * 269.97430 * 5 4 3 32 32 H 1.09004 * 109.46769 * 29.97031 * 5 4 3 33 33 H 1.08994 * 109.47416 * 149.97131 * 5 4 3 34 34 H 0.96998 * 120.00048 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.46987 * 60.00085 * 10 9 7 36 36 H 1.09006 * 109.47173 * 299.99977 * 10 9 7 37 37 H 1.09001 * 109.47093 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.47121 * 299.99938 * 13 11 10 39 39 H 1.08994 * 109.47090 * 60.00118 * 13 11 10 40 40 H 0.96999 * 119.99694 * 334.99473 * 14 11 10 41 41 H 1.09000 * 109.47318 * 299.99141 * 17 15 14 42 42 H 1.09000 * 109.47161 * 59.99772 * 17 15 14 43 43 H 0.97002 * 120.00245 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5465 0.6863 -0.0006 5 6 4.7453 1.5995 -0.0002 6 6 3.5708 -0.6769 -0.0003 7 6 4.7636 -1.5313 -0.0013 8 8 5.8719 -1.0291 -0.0020 9 7 4.6316 -2.8727 -0.0004 10 6 5.8225 -3.7259 -0.0008 11 6 5.3970 -5.1955 -0.0003 12 1 4.8783 -5.4240 -0.9314 13 6 6.6355 -6.0850 0.1250 14 7 4.5007 -5.4440 1.1315 15 6 3.6170 -6.4603 1.0809 16 8 3.5634 -7.1689 0.0981 17 6 2.6954 -6.7162 2.2455 18 16 1.6364 -8.1368 1.8760 19 6 0.6914 -8.2085 3.3614 20 1 0.8693 -7.4921 4.1497 21 6 -0.2809 -9.1865 3.5187 22 7 -0.9873 -9.2397 4.6282 23 14 -0.5872 -10.4270 2.1562 24 1 0.2843 -11.6119 2.3604 25 1 -2.0106 -10.8492 2.1818 26 1 -0.2786 -9.8061 0.8430 27 8 2.2817 -1.0892 -0.0055 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 5.0343 1.8200 -1.0278 32 1 4.4949 2.5275 0.5139 33 1 5.5736 1.1116 0.5135 34 1 3.7481 -3.2731 0.0005 35 1 6.4177 -3.5192 0.8886 36 1 6.4164 -3.5203 -0.8914 37 1 6.3324 -7.1320 0.1249 38 1 7.3024 -5.9001 -0.7172 39 1 7.1542 -5.8566 1.0561 40 1 4.5434 -4.8771 1.9175 41 1 3.2863 -6.9254 3.1373 42 1 2.0755 -5.8365 2.4185 43 1 -1.6671 -9.9229 4.7381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526472350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:12 Heat of formation + Delta-G solvation = -89.948859 kcal Electronic energy + Delta-G solvation = -26643.016588 eV Core-core repulsion = 22621.814625 eV Total energy + Delta-G solvation = -4021.201963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.57477 -41.17098 -40.45266 -37.61362 -36.49830 -34.91960 -34.66889 -33.82857 -32.72867 -30.33122 -30.15000 -29.08449 -27.85042 -26.87938 -23.42071 -23.02656 -22.71462 -21.72479 -21.61312 -19.99026 -19.37091 -18.23256 -18.02403 -17.69596 -17.16349 -17.04204 -16.75120 -16.43521 -16.24975 -15.72864 -15.45358 -15.25810 -14.99869 -14.76128 -14.35275 -14.20183 -14.10019 -14.05291 -13.92747 -13.65278 -13.51778 -13.36203 -13.32166 -13.17570 -13.02735 -12.98360 -12.60361 -12.09766 -12.08545 -12.04920 -11.86252 -11.36996 -11.17251 -11.02102 -10.53489 -10.45255 -10.24691 -9.86730 -8.99054 -8.51576 -6.22095 -0.36349 0.98739 1.23367 1.25887 1.31719 1.46496 1.54157 1.55357 1.86524 1.94805 2.20592 2.25544 2.71230 2.84416 2.86886 3.47162 3.57946 3.58837 3.85058 4.02025 4.19579 4.24663 4.26424 4.28854 4.46834 4.54794 4.57485 4.58440 4.64816 4.66832 4.71638 4.74168 4.85723 4.97923 5.04058 5.11348 5.26908 5.31834 5.42151 5.70601 6.09582 6.11651 6.39918 6.46739 6.79967 6.93692 7.15463 8.60869 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.002694 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.942635 B =10389.955620 C =12340.029612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.231 3.769 3 N -0.516 5.516 4 C 0.076 3.924 5 C -0.078 4.078 6 C -0.148 4.148 7 C 0.615 3.385 8 O -0.534 6.534 9 N -0.711 5.711 10 C 0.120 3.880 11 C 0.136 3.864 12 H 0.083 0.917 13 C -0.157 4.157 14 N -0.712 5.712 15 C 0.541 3.459 16 O -0.555 6.555 17 C -0.114 4.114 18 S -0.171 6.171 19 C -0.528 4.528 20 H 0.061 0.939 21 C 0.045 3.955 22 N -0.918 5.918 23 Si 0.915 3.085 24 H -0.264 1.264 25 H -0.260 1.260 26 H -0.235 1.235 27 O -0.194 6.194 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.410 0.590 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.414 0.586 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.570 20.168 -10.697 25.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.027 3.973 3 N -0.247 5.247 4 C -0.048 4.048 5 C -0.135 4.135 6 C -0.203 4.203 7 C 0.401 3.599 8 O -0.414 6.414 9 N -0.362 5.362 10 C -0.003 4.003 11 C 0.032 3.968 12 H 0.101 0.899 13 C -0.216 4.216 14 N -0.367 5.367 15 C 0.326 3.674 16 O -0.432 6.432 17 C -0.265 4.265 18 S 0.055 5.945 19 C -0.676 4.676 20 H 0.079 0.921 21 C -0.161 4.161 22 N -0.556 5.556 23 Si 0.737 3.263 24 H -0.188 1.188 25 H -0.185 1.185 26 H -0.158 1.158 27 O -0.082 6.082 28 H 0.137 0.863 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.246 0.754 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.251 0.749 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.900 19.793 -12.223 26.130 hybrid contribution -0.702 -0.555 1.573 1.809 sum 11.198 19.238 -10.650 24.676 Atomic orbital electron populations 1.20741 0.77603 1.07088 1.06830 1.27592 0.98146 0.77868 0.93729 1.70421 1.01794 1.30689 1.21794 1.22511 0.94214 0.91699 0.96365 1.20430 0.91210 0.97486 1.04334 1.22849 0.82854 0.95349 1.19222 1.16220 0.85174 0.81810 0.76718 1.90845 1.24272 1.74281 1.51978 1.45871 1.11579 1.04914 1.73853 1.21854 0.86842 0.86462 1.05175 1.21244 0.91657 0.93747 0.90197 0.89853 1.22075 0.96406 0.98928 1.04167 1.45892 1.37102 1.32478 1.21240 1.19868 0.80132 0.80189 0.87190 1.90705 1.70218 1.47906 1.34386 1.23289 1.00173 1.02353 1.00664 1.84686 1.44038 1.40324 1.25431 1.22464 1.23187 1.19626 1.02332 0.92063 1.25576 0.94154 0.98549 0.97780 1.70020 1.23136 1.35444 1.27003 0.85863 0.78987 0.80180 0.81316 1.18834 1.18470 1.15837 1.84471 1.16038 1.37871 1.69826 0.86348 0.87415 0.86262 0.89084 0.89346 0.89139 0.75371 0.88914 0.88171 0.93651 0.89176 0.90619 0.74902 0.87088 0.86889 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.51 71.24 0.75 0.16 16 2 C 0.23 4.29 8.32 88.29 0.73 5.03 16 3 N -0.52 -11.38 11.26 -291.04 -3.28 -14.65 16 4 C 0.08 1.69 7.16 41.83 0.30 1.99 16 5 C -0.08 -1.34 9.87 71.24 0.70 -0.64 16 6 C -0.15 -3.29 7.18 24.05 0.17 -3.11 16 7 C 0.61 12.91 7.79 86.46 0.67 13.58 16 8 O -0.53 -12.86 14.79 -4.28 -0.06 -12.92 16 9 N -0.71 -11.88 5.38 -467.05 -2.51 -14.39 16 10 C 0.12 1.59 5.23 86.38 0.45 2.05 16 11 C 0.14 2.24 2.73 44.99 0.12 2.37 16 12 H 0.08 1.69 7.58 -2.39 -0.02 1.67 16 13 C -0.16 -2.38 9.48 71.98 0.68 -1.70 16 14 N -0.71 -14.00 4.52 -442.54 -2.00 -16.00 16 15 C 0.54 16.47 7.81 87.66 0.68 17.16 16 16 O -0.55 -21.38 15.52 -3.03 -0.05 -21.43 16 17 C -0.11 -3.98 6.16 71.24 0.44 -3.54 16 18 S -0.17 -8.28 18.55 -56.49 -1.05 -9.33 16 19 C -0.53 -29.97 10.04 67.96 0.68 -29.29 16 20 H 0.06 3.68 8.03 -2.91 -0.02 3.65 16 21 C 0.04 2.58 5.50 84.86 0.47 3.04 16 22 N -0.92 -55.11 13.97 21.65 0.30 -54.80 16 23 Si 0.91 44.01 27.74 68.60 1.90 45.91 16 24 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.23 -11.17 6.74 99.48 0.67 -10.50 16 27 O -0.19 -4.09 10.57 -7.11 -0.08 -4.17 16 28 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.66 6.47 -2.39 -0.02 1.64 16 34 H 0.41 6.94 7.93 -92.71 -0.74 6.20 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.41 6.16 8.60 -92.71 -0.80 5.36 16 41 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 42 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 43 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -77.33 385.67 -0.47 -77.79 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -0.51 Total: 16.89 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.86 Total: 7.10 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -7.49 Total: -99.85 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.19 Total: -38.51 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.90 Total: 45.91 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.05 Total: -9.33 kcal Total: -77.33 -0.47 -77.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526472350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.156 kcal (2) G-P(sol) polarization free energy of solvation -77.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds