Wall clock time and date at job start Sat Apr 11 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31695 * 119.71569 * 2 1 4 4 C 1.31918 * 121.88108 * 180.02562 * 3 2 1 5 5 C 1.38353 * 121.07910 * 359.97438 * 4 3 2 6 6 N 1.48023 * 120.34945 * 180.02562 * 5 4 3 7 7 O 1.21798 * 119.99773 * 359.97438 * 6 5 4 8 8 O 1.21793 * 120.00019 * 179.97438 * 6 5 4 9 9 C 1.38360 * 119.30385 * 359.75893 * 5 4 3 10 10 C 1.39518 * 119.71784 * 180.02562 * 2 1 3 11 11 C 1.47838 * 120.55982 * 359.97438 * 10 2 1 12 12 O 1.21553 * 119.99883 * 354.45591 * 11 10 2 13 13 N 1.34775 * 120.00097 * 174.44949 * 11 10 2 14 14 C 1.46498 * 120.00065 * 179.72241 * 13 11 10 15 15 C 1.50705 * 109.47350 * 180.27856 * 14 13 11 16 16 C 1.38638 * 119.74731 * 269.73374 * 15 14 13 17 17 C 1.37621 * 120.24398 * 179.71966 * 16 15 14 18 18 C 1.40723 * 119.74408 * 0.56810 * 17 16 15 19 19 C 1.41387 * 120.24107 * 179.68292 * 18 17 16 20 20 H 1.08005 * 119.99698 * 205.43187 * 19 18 17 21 21 C 1.39946 * 120.00725 * 25.43323 * 19 18 17 22 22 N 1.30827 * 119.99375 * 16.88217 * 21 19 18 23 23 Si 1.86795 * 120.00419 * 196.88287 * 21 19 18 24 24 H 1.48505 * 109.46989 * 90.00035 * 23 21 19 25 25 H 1.48504 * 109.46996 * 209.99729 * 23 21 19 26 26 H 1.48501 * 109.47265 * 329.99805 * 23 21 19 27 27 C 1.40716 * 119.51217 * 359.70486 * 18 17 16 28 28 C 1.37622 * 119.74216 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.47675 * 263.15742 * 1 2 3 30 30 H 1.08999 * 109.47172 * 23.16403 * 1 2 3 31 31 H 1.09002 * 109.46713 * 143.15833 * 1 2 3 32 32 H 1.08004 * 119.45976 * 179.97438 * 4 3 2 33 33 H 1.07997 * 120.85824 * 180.28303 * 9 5 4 34 34 H 0.97000 * 120.00022 * 0.02562 * 13 11 10 35 35 H 1.08998 * 109.47788 * 300.28085 * 14 13 11 36 36 H 1.09001 * 109.46956 * 60.28521 * 14 13 11 37 37 H 1.07988 * 119.88025 * 359.97438 * 16 15 14 38 38 H 1.07996 * 120.13071 * 180.28056 * 17 16 15 39 39 H 0.97003 * 119.99682 * 180.02562 * 22 21 19 40 40 H 1.07996 * 120.12597 * 179.97438 * 27 18 17 41 41 H 1.08003 * 119.86948 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4780 1.1936 -0.0005 5 6 4.2365 0.0365 -0.0005 6 7 5.7148 0.1113 -0.0005 7 8 6.2697 1.1955 -0.0010 8 8 6.3763 -0.9114 -0.0001 9 6 3.5987 -1.1913 0.0051 10 6 2.1986 -1.2117 -0.0005 11 6 1.4656 -2.4956 -0.0005 12 8 0.2544 -2.5039 0.1016 13 7 2.1404 -3.6567 -0.1140 14 6 1.4145 -4.9293 -0.1079 15 6 2.3940 -6.0669 -0.2404 16 6 2.7353 -6.5377 -1.4989 17 6 3.6330 -7.5723 -1.6320 18 6 4.1958 -8.1604 -0.4841 19 6 5.1141 -9.2283 -0.6084 20 1 5.2324 -9.9354 0.1993 21 6 5.8696 -9.3691 -1.7780 22 7 5.9841 -8.3640 -2.6076 23 14 6.7146 -10.9919 -2.1545 24 1 5.7974 -11.8571 -2.9390 25 1 7.9482 -10.7369 -2.9409 26 1 7.0698 -11.6717 -0.8829 27 6 3.8377 -7.6780 0.7884 28 6 2.9421 -6.6387 0.8973 29 1 -0.3634 -0.1224 1.0203 30 1 -0.3633 0.9448 -0.4042 31 1 -0.3633 -0.8225 -0.6162 32 1 3.9733 2.1534 -0.0009 33 1 4.1660 -2.1102 0.0098 34 1 3.1069 -3.6501 -0.1952 35 1 0.8653 -5.0299 0.8282 36 1 0.7153 -4.9527 -0.9437 37 1 2.2983 -6.0883 -2.3782 38 1 3.9010 -7.9346 -2.6135 39 1 6.5075 -8.4616 -3.4184 40 1 4.2632 -8.1223 1.6760 41 1 2.6661 -6.2666 1.8730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526664977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:16 Heat of formation + Delta-G solvation = 14.342239 kcal Electronic energy + Delta-G solvation = -27881.404624 eV Core-core repulsion = 23729.281111 eV Total energy + Delta-G solvation = -4152.123513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.56022 -41.25056 -39.35219 -37.79184 -36.83788 -35.23523 -34.15184 -33.52079 -33.16390 -30.58360 -29.50401 -29.29255 -27.13413 -25.95810 -25.29688 -23.85256 -22.59884 -21.20489 -21.11276 -20.31833 -19.58091 -19.05215 -17.83909 -17.47561 -17.38595 -17.26983 -16.79682 -15.83133 -15.53473 -15.43128 -14.70326 -14.50884 -14.20421 -13.98496 -13.75362 -13.52888 -13.20123 -12.98706 -12.61487 -12.56826 -12.19121 -12.12816 -11.84398 -11.78176 -11.75850 -11.37606 -11.24549 -11.12826 -10.90441 -10.82291 -10.68295 -10.53472 -10.04497 -9.94578 -9.77204 -9.57250 -9.32520 -8.97286 -7.67729 -7.55163 -6.93795 -4.55098 -0.67836 -0.05571 0.88270 0.96376 2.35917 2.40655 2.87612 2.92140 2.99156 3.01755 3.07686 3.20660 3.46536 3.67154 3.80554 3.83650 3.87653 4.30566 4.45143 4.66988 4.86177 4.96663 5.32699 5.33302 5.44999 5.49466 5.62586 5.71675 5.89616 6.01405 6.08120 6.13107 6.22220 6.47076 6.77854 6.90168 6.90473 7.07354 7.16396 7.32712 7.40670 7.41644 7.67261 7.87140 7.89486 8.00958 8.10752 8.45307 8.70632 8.77240 10.00162 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.002665 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.463684 B =10504.144043 C =12257.209446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.233 3.767 3 N -0.475 5.475 4 C 0.199 3.801 5 C -0.116 4.116 6 N 0.033 4.967 7 O -0.154 6.154 8 O -0.145 6.145 9 C 0.025 3.975 10 C -0.183 4.183 11 C 0.556 3.444 12 O -0.529 6.529 13 N -0.705 5.705 14 C 0.185 3.815 15 C -0.254 4.254 16 C -0.080 4.080 17 C -0.168 4.168 18 C 0.118 3.882 19 C -0.456 4.456 20 H 0.080 0.920 21 C 0.075 3.925 22 N -0.785 5.785 23 Si 0.911 3.089 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.229 4.229 28 C -0.068 4.068 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.189 0.811 33 H 0.171 0.829 34 H 0.401 0.599 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.283 0.717 40 H 0.094 0.906 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.606 14.376 2.401 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 N -0.185 5.185 4 C 0.039 3.961 5 C -0.202 4.202 6 N 0.554 4.446 7 O -0.370 6.370 8 O -0.362 6.362 9 C -0.002 4.002 10 C -0.189 4.189 11 C 0.341 3.659 12 O -0.408 6.408 13 N -0.355 5.355 14 C 0.064 3.936 15 C -0.256 4.256 16 C -0.099 4.099 17 C -0.187 4.187 18 C 0.116 3.884 19 C -0.485 4.485 20 H 0.098 0.902 21 C -0.144 4.144 22 N -0.410 5.410 23 Si 0.735 3.265 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.185 1.185 27 C -0.248 4.248 28 C -0.087 4.087 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.206 0.794 33 H 0.189 0.811 34 H 0.237 0.763 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.136 0.864 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.564 15.126 2.247 17.060 hybrid contribution 2.113 -1.412 -0.270 2.556 sum -5.451 13.714 1.977 14.889 Atomic orbital electron populations 1.21272 0.85693 1.05057 1.05377 1.22175 0.98873 0.86220 0.83129 1.68153 1.07118 1.28186 1.15063 1.23101 0.89207 0.97850 0.85923 1.22178 0.81576 0.97736 1.18690 1.43345 1.02653 1.00793 0.97814 1.94546 1.72757 1.16334 1.53318 1.94635 1.63916 1.24893 1.52796 1.21811 0.94080 0.98065 0.86200 1.21073 0.92380 0.96958 1.08476 1.17705 0.87134 0.82997 0.78056 1.90739 1.12859 1.86779 1.50473 1.46622 1.11397 1.05960 1.71520 1.20074 0.92973 0.79409 1.01122 1.18915 1.09019 1.03673 0.93968 1.20548 0.97574 0.97163 0.94655 1.21311 0.98732 0.99320 0.99333 1.17688 0.89403 0.90488 0.90871 1.19697 1.18114 1.09820 1.00831 0.90164 1.25963 0.95582 0.97656 0.95196 1.69806 1.30982 1.30179 1.10011 0.86262 0.78830 0.81846 0.79580 1.19147 1.20143 1.18487 1.20991 1.05364 1.01575 0.96882 1.20400 0.96437 0.96260 0.95600 0.88451 0.90254 0.86662 0.79374 0.81136 0.76346 0.91808 0.91755 0.89400 0.86364 0.90575 0.88801 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 8.87 36.01 0.32 -0.74 16 2 C 0.23 2.42 6.82 -82.17 -0.56 1.86 16 3 N -0.48 -4.73 10.26 -9.15 -0.09 -4.83 16 4 C 0.20 1.83 10.71 -17.47 -0.19 1.64 16 5 C -0.12 -1.24 6.87 -79.86 -0.55 -1.79 16 6 N 0.03 0.41 4.45 34.01 0.15 0.57 16 7 O -0.15 -1.92 18.47 -29.46 -0.54 -2.46 16 8 O -0.14 -2.06 18.52 -29.46 -0.55 -2.60 16 9 C 0.02 0.26 9.13 -38.87 -0.35 -0.09 16 10 C -0.18 -2.03 5.89 -104.82 -0.62 -2.65 16 11 C 0.56 7.29 7.71 -12.33 -0.10 7.20 16 12 O -0.53 -7.83 13.36 5.32 0.07 -7.76 16 13 N -0.71 -9.70 5.50 -62.43 -0.34 -10.04 16 14 C 0.18 2.91 5.79 -5.19 -0.03 2.88 16 15 C -0.25 -4.82 5.27 -104.33 -0.55 -5.37 16 16 C -0.08 -1.68 9.67 -39.66 -0.38 -2.06 16 17 C -0.17 -4.00 8.69 -38.87 -0.34 -4.34 16 18 C 0.12 2.92 5.57 -106.83 -0.59 2.33 16 19 C -0.46 -11.34 9.05 -37.75 -0.34 -11.68 16 20 H 0.08 1.93 7.90 -52.48 -0.41 1.51 16 21 C 0.08 1.78 5.15 -17.34 -0.09 1.69 16 22 N -0.79 -19.09 10.96 55.55 0.61 -18.48 16 23 Si 0.91 17.67 29.59 -169.99 -5.03 12.64 16 24 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 26 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 27 C -0.23 -5.15 9.80 -38.87 -0.38 -5.53 16 28 C -0.07 -1.36 9.67 -39.66 -0.38 -1.74 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.12 1.19 5.85 -51.93 -0.30 0.89 16 32 H 0.19 1.24 7.61 -52.48 -0.40 0.84 16 33 H 0.17 1.71 6.20 -52.49 -0.33 1.38 16 34 H 0.40 5.22 6.61 -40.82 -0.27 4.95 16 35 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.12 2.95 6.20 -52.49 -0.33 2.62 16 39 H 0.28 6.27 8.30 -40.82 -0.34 5.94 16 40 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 41 H 0.09 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -26.73 362.36 -9.52 -36.26 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.13 Total: 9.64 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -5.13 Total: -18.39 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.32 Total: -32.78 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.02 Total: -12.82 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -26.73 -9.52 -36.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526664977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.600 kcal (2) G-P(sol) polarization free energy of solvation -26.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds