Wall clock time and date at job start Sat Apr 11 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31695 * 119.71569 * 2 1 4 4 C 1.31918 * 121.88108 * 180.02562 * 3 2 1 5 5 C 1.38353 * 121.07910 * 359.97438 * 4 3 2 6 6 N 1.48023 * 120.34945 * 180.02562 * 5 4 3 7 7 O 1.21798 * 119.99773 * 359.97438 * 6 5 4 8 8 O 1.21793 * 120.00019 * 179.97438 * 6 5 4 9 9 C 1.38360 * 119.30385 * 359.75893 * 5 4 3 10 10 C 1.39518 * 119.71784 * 180.02562 * 2 1 3 11 11 C 1.47838 * 120.55982 * 359.97438 * 10 2 1 12 12 O 1.21553 * 119.99883 * 354.45591 * 11 10 2 13 13 N 1.34775 * 120.00097 * 174.44949 * 11 10 2 14 14 C 1.46498 * 120.00065 * 179.72241 * 13 11 10 15 15 C 1.50705 * 109.47350 * 180.27856 * 14 13 11 16 16 C 1.38638 * 119.74731 * 269.73374 * 15 14 13 17 17 C 1.37621 * 120.24398 * 179.71966 * 16 15 14 18 18 C 1.40723 * 119.74408 * 0.56810 * 17 16 15 19 19 C 1.41387 * 120.24107 * 179.68292 * 18 17 16 20 20 H 1.08005 * 119.99698 * 205.43187 * 19 18 17 21 21 C 1.39946 * 120.00725 * 25.43323 * 19 18 17 22 22 N 1.30827 * 119.99375 * 16.88217 * 21 19 18 23 23 Si 1.86795 * 120.00419 * 196.88287 * 21 19 18 24 24 H 1.48505 * 109.46989 * 90.00035 * 23 21 19 25 25 H 1.48504 * 109.46996 * 209.99729 * 23 21 19 26 26 H 1.48501 * 109.47265 * 329.99805 * 23 21 19 27 27 C 1.40716 * 119.51217 * 359.70486 * 18 17 16 28 28 C 1.37622 * 119.74216 * 0.02562 * 27 18 17 29 29 H 1.08999 * 109.47675 * 263.15742 * 1 2 3 30 30 H 1.08999 * 109.47172 * 23.16403 * 1 2 3 31 31 H 1.09002 * 109.46713 * 143.15833 * 1 2 3 32 32 H 1.08004 * 119.45976 * 179.97438 * 4 3 2 33 33 H 1.07997 * 120.85824 * 180.28303 * 9 5 4 34 34 H 0.97000 * 120.00022 * 0.02562 * 13 11 10 35 35 H 1.08998 * 109.47788 * 300.28085 * 14 13 11 36 36 H 1.09001 * 109.46956 * 60.28521 * 14 13 11 37 37 H 1.07988 * 119.88025 * 359.97438 * 16 15 14 38 38 H 1.07996 * 120.13071 * 180.28056 * 17 16 15 39 39 H 0.97003 * 119.99682 * 180.02562 * 22 21 19 40 40 H 1.07996 * 120.12597 * 179.97438 * 27 18 17 41 41 H 1.08003 * 119.86948 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4780 1.1936 -0.0005 5 6 4.2365 0.0365 -0.0005 6 7 5.7148 0.1113 -0.0005 7 8 6.2697 1.1955 -0.0010 8 8 6.3763 -0.9114 -0.0001 9 6 3.5987 -1.1913 0.0051 10 6 2.1986 -1.2117 -0.0005 11 6 1.4656 -2.4956 -0.0005 12 8 0.2544 -2.5039 0.1016 13 7 2.1404 -3.6567 -0.1140 14 6 1.4145 -4.9293 -0.1079 15 6 2.3940 -6.0669 -0.2404 16 6 2.7353 -6.5377 -1.4989 17 6 3.6330 -7.5723 -1.6320 18 6 4.1958 -8.1604 -0.4841 19 6 5.1141 -9.2283 -0.6084 20 1 5.2324 -9.9354 0.1993 21 6 5.8696 -9.3691 -1.7780 22 7 5.9841 -8.3640 -2.6076 23 14 6.7146 -10.9919 -2.1545 24 1 5.7974 -11.8571 -2.9390 25 1 7.9482 -10.7369 -2.9409 26 1 7.0698 -11.6717 -0.8829 27 6 3.8377 -7.6780 0.7884 28 6 2.9421 -6.6387 0.8973 29 1 -0.3634 -0.1224 1.0203 30 1 -0.3633 0.9448 -0.4042 31 1 -0.3633 -0.8225 -0.6162 32 1 3.9733 2.1534 -0.0009 33 1 4.1660 -2.1102 0.0098 34 1 3.1069 -3.6501 -0.1952 35 1 0.8653 -5.0299 0.8282 36 1 0.7153 -4.9527 -0.9437 37 1 2.2983 -6.0883 -2.3782 38 1 3.9010 -7.9346 -2.6135 39 1 6.5075 -8.4616 -3.4184 40 1 4.2632 -8.1223 1.6760 41 1 2.6661 -6.2666 1.8730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526664977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:15 Heat of formation + Delta-G solvation = 1.070320 kcal Electronic energy + Delta-G solvation = -27881.980138 eV Core-core repulsion = 23729.281111 eV Total energy + Delta-G solvation = -4152.699026 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.49282 -42.15952 -40.44078 -39.41146 -37.82153 -36.53810 -35.44130 -34.67767 -34.10550 -32.11059 -31.19501 -30.26915 -28.61524 -26.81518 -26.38485 -25.23927 -23.51703 -22.91918 -22.20955 -21.84806 -20.63538 -19.99319 -19.24911 -18.78070 -18.37032 -18.21199 -17.61480 -17.20712 -16.78409 -16.60657 -15.95635 -15.80912 -15.58412 -15.18024 -15.10651 -14.75519 -14.22020 -13.99658 -13.84200 -13.74991 -13.59791 -13.48293 -13.25445 -12.85812 -12.83023 -12.75314 -12.73634 -12.49904 -12.39957 -12.11499 -11.74612 -11.56692 -11.52046 -11.30119 -11.09744 -10.90260 -10.85285 -10.13481 -9.41046 -9.29443 -8.67848 -6.38887 -1.56943 -0.90645 -0.04860 0.06111 0.80678 1.12567 1.38027 1.42945 1.45401 1.50506 1.99078 2.16186 2.18991 2.67524 2.72026 2.85963 2.97552 3.03921 3.46935 3.68939 3.74823 4.09580 4.13918 4.16915 4.30523 4.49476 4.54836 4.64827 4.65484 4.74601 4.77968 5.01905 5.03990 5.13405 5.17365 5.33174 5.36778 5.42090 5.67136 5.88599 6.07550 6.10034 6.17145 6.30409 6.34959 6.36239 6.66897 6.90794 6.93318 6.99103 8.28417 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.002665 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.463684 B =10504.144043 C =12257.209446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.238 3.762 3 N -0.477 5.477 4 C 0.216 3.784 5 C -0.124 4.124 6 N 0.036 4.964 7 O -0.132 6.132 8 O -0.197 6.197 9 C 0.030 3.970 10 C -0.191 4.191 11 C 0.563 3.437 12 O -0.544 6.544 13 N -0.707 5.707 14 C 0.194 3.806 15 C -0.231 4.231 16 C -0.082 4.082 17 C -0.191 4.191 18 C 0.087 3.913 19 C -0.497 4.497 20 H 0.075 0.925 21 C 0.037 3.963 22 N -0.819 5.819 23 Si 0.979 3.021 24 H -0.262 1.262 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.244 4.244 28 C -0.067 4.067 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.218 0.782 33 H 0.172 0.828 34 H 0.405 0.595 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.289 0.711 40 H 0.096 0.904 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.682 16.456 2.832 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.187 5.187 4 C 0.056 3.944 5 C -0.210 4.210 6 N 0.554 4.446 7 O -0.357 6.357 8 O -0.403 6.403 9 C 0.004 3.996 10 C -0.197 4.197 11 C 0.349 3.651 12 O -0.424 6.424 13 N -0.357 5.357 14 C 0.072 3.928 15 C -0.232 4.232 16 C -0.101 4.101 17 C -0.211 4.211 18 C 0.084 3.916 19 C -0.526 4.526 20 H 0.093 0.907 21 C -0.179 4.179 22 N -0.445 5.445 23 Si 0.800 3.200 24 H -0.187 1.187 25 H -0.193 1.193 26 H -0.183 1.183 27 C -0.263 4.263 28 C -0.086 4.086 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.235 0.765 33 H 0.189 0.811 34 H 0.241 0.759 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.627 17.119 2.687 19.357 hybrid contribution 2.265 -1.756 -0.338 2.886 sum -6.362 15.363 2.349 16.793 Atomic orbital electron populations 1.21276 0.84742 1.05542 1.05559 1.22415 0.99560 0.86024 0.81828 1.68283 1.07251 1.27607 1.15523 1.23586 0.88852 0.98385 0.83549 1.22207 0.80302 0.98367 1.20101 1.43548 1.03366 1.00453 0.97241 1.94514 1.73373 1.16170 1.51633 1.94655 1.64744 1.25225 1.55635 1.21841 0.93990 0.98399 0.85369 1.20805 0.92241 0.96251 1.10366 1.17799 0.86895 0.83200 0.77197 1.90745 1.13547 1.87053 1.51038 1.46366 1.11542 1.05627 1.72171 1.19890 0.92022 0.78951 1.01911 1.19207 1.07664 1.03496 0.92868 1.20778 0.96716 0.96243 0.96325 1.21262 1.00414 1.00973 0.98411 1.18010 0.90225 0.91329 0.92015 1.19900 1.19827 1.10876 1.01967 0.90655 1.26722 0.95854 1.00728 0.94601 1.69855 1.32107 1.31854 1.10640 0.85234 0.77878 0.77533 0.79308 1.18709 1.19315 1.18270 1.21178 1.06301 1.02544 0.96291 1.20704 0.95352 0.95162 0.97336 0.87817 0.88460 0.87855 0.76532 0.81051 0.75899 0.90850 0.91299 0.87540 0.88303 0.90063 0.88548 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 8.87 71.24 0.63 -1.14 16 2 C 0.24 4.32 6.82 42.89 0.29 4.61 16 3 N -0.48 -8.00 10.26 -182.85 -1.88 -9.87 16 4 C 0.22 3.29 10.71 84.71 0.91 4.20 16 5 C -0.12 -2.40 6.87 36.43 0.25 -2.15 16 6 N 0.04 0.86 4.45 -46.32 -0.21 0.66 16 7 O -0.13 -3.05 18.47 18.89 0.35 -2.70 16 8 O -0.20 -5.63 18.52 18.89 0.35 -5.28 16 9 C 0.03 0.60 9.13 22.73 0.21 0.81 16 10 C -0.19 -3.84 5.89 -20.00 -0.12 -3.96 16 11 C 0.56 13.61 7.71 86.78 0.67 14.28 16 12 O -0.54 -14.90 13.36 -3.88 -0.05 -14.95 16 13 N -0.71 -18.05 5.50 -469.71 -2.58 -20.63 16 14 C 0.19 5.65 5.79 85.63 0.50 6.15 16 15 C -0.23 -8.43 5.27 -19.67 -0.10 -8.53 16 16 C -0.08 -3.39 9.67 22.22 0.21 -3.18 16 17 C -0.19 -9.42 8.69 22.73 0.20 -9.22 16 18 C 0.09 4.44 5.57 -21.29 -0.12 4.32 16 19 C -0.50 -25.85 9.05 23.46 0.21 -25.63 16 20 H 0.08 3.81 7.90 -2.91 -0.02 3.78 16 21 C 0.04 1.79 5.15 85.26 0.44 2.23 16 22 N -0.82 -41.38 10.96 21.83 0.24 -41.14 16 23 Si 0.98 37.15 29.59 68.60 2.03 39.18 16 24 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 25 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 26 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 27 C -0.24 -11.12 9.80 22.73 0.22 -10.90 16 28 C -0.07 -2.59 9.67 22.22 0.21 -2.37 16 29 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 31 H 0.10 1.92 5.85 -2.39 -0.01 1.91 16 32 H 0.22 1.99 7.61 -2.91 -0.02 1.97 16 33 H 0.17 3.31 6.20 -2.91 -0.02 3.30 16 34 H 0.40 9.94 6.61 -92.71 -0.61 9.32 16 35 H 0.07 2.05 8.08 -2.39 -0.02 2.03 16 36 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 37 H 0.11 3.95 8.06 -2.92 -0.02 3.93 16 38 H 0.10 5.19 6.20 -2.91 -0.02 5.17 16 39 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 40 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 41 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -59.00 362.36 3.36 -55.64 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.50 Total: 29.60 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 4.62 Total: -30.50 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -4.43 Total: -70.99 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.65 Total: -22.93 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -59.00 3.36 -55.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526664977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.707 kcal (2) G-P(sol) polarization free energy of solvation -58.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds