Wall clock time and date at job start Sat Apr 11 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 119.99706 * 2 1 4 4 H 1.48496 * 109.47363 * 240.00003 * 3 2 1 5 5 H 1.48503 * 109.47128 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47069 * 119.99961 * 3 2 1 7 7 C 1.38793 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99581 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00121 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47255 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99888 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00431 * 179.97438 * 11 10 9 14 14 C 1.46600 * 119.67701 * 359.97438 * 13 11 10 15 15 C 1.53956 * 110.57614 * 132.19280 * 14 13 11 16 16 C 1.50837 * 108.17726 * 50.38069 * 15 14 13 17 17 H 1.08999 * 107.33166 * 54.33854 * 16 15 14 18 18 C 1.55054 * 108.30830 * 296.73391 * 16 15 14 19 19 H 1.09000 * 111.30392 * 307.57201 * 18 16 15 20 20 C 1.53743 * 100.33842 * 189.68995 * 18 16 15 21 21 C 1.55286 * 101.84248 * 38.91973 * 20 18 16 22 22 N 1.45460 * 118.32171 * 178.45402 * 16 15 14 23 23 C 1.34773 * 126.40821 * 330.64595 * 22 16 15 24 24 O 1.21353 * 120.00047 * 359.71955 * 23 22 16 25 25 C 1.49454 * 120.00135 * 179.43801 * 23 22 16 26 26 N 1.34777 * 120.00164 * 180.27489 * 25 23 22 27 27 O 1.21343 * 119.99752 * 0.28157 * 25 23 22 28 28 C 1.47708 * 119.68640 * 179.97438 * 13 11 10 29 29 H 0.97002 * 120.00692 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46820 * 60.00371 * 10 9 7 31 31 H 1.08994 * 109.47246 * 299.99994 * 10 9 7 32 32 H 1.09009 * 109.25305 * 252.47453 * 14 13 11 33 33 H 1.08994 * 109.25963 * 11.94571 * 14 13 11 34 34 H 1.09002 * 109.88203 * 170.50692 * 15 14 13 35 35 H 1.08994 * 109.88195 * 291.51788 * 15 14 13 36 36 H 1.08996 * 110.95681 * 280.77968 * 20 18 16 37 37 H 1.09005 * 110.95354 * 157.05149 * 20 18 16 38 38 H 1.08997 * 109.91955 * 218.17307 * 21 20 18 39 39 H 1.08999 * 110.09031 * 96.95991 * 21 20 18 40 40 H 0.97000 * 119.99555 * 0.02562 * 26 25 23 41 41 H 0.96991 * 120.00395 * 180.02562 * 26 25 23 42 42 H 1.09004 * 110.06977 * 112.82935 * 28 13 11 43 43 H 1.09003 * 110.16227 * 351.30862 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0008 14 6 4.2889 -6.0937 -0.0009 15 6 4.9878 -6.9551 1.0667 16 6 4.5336 -8.3827 0.8907 17 1 4.7280 -8.6600 -0.1453 18 6 3.0067 -8.4438 1.1530 19 1 2.7509 -7.9908 2.1108 20 6 2.7920 -9.9660 1.1798 21 6 4.0630 -10.4539 1.9268 22 7 5.0903 -9.3975 1.7717 23 6 6.3101 -9.3779 2.3444 24 8 7.0631 -8.4491 2.1366 25 6 6.7332 -10.4967 3.2404 26 7 7.9510 -10.4743 3.8175 27 8 5.9803 -11.4254 3.4481 28 6 2.3187 -7.7235 0.0020 29 1 -0.4851 0.8400 0.0004 30 1 3.1245 -3.7312 0.8906 31 1 3.1245 -3.7313 -0.8894 32 1 4.6947 -6.3384 -0.9825 33 1 4.4721 -5.0405 0.2114 34 1 6.0692 -6.8900 0.9458 35 1 4.7050 -6.6133 2.0622 36 1 2.7538 -10.3722 0.1691 37 1 1.8904 -10.2228 1.7359 38 1 4.4184 -11.3851 1.4858 39 1 3.8417 -10.6043 2.9834 40 1 8.5527 -9.7318 3.6515 41 1 8.2257 -11.2006 4.3986 42 1 2.5558 -8.2149 -0.9417 43 1 1.2398 -7.7146 0.1577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533055559.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:32 Heat of formation + Delta-G solvation = -118.483432 kcal Electronic energy + Delta-G solvation = -27500.677687 eV Core-core repulsion = 23478.238372 eV Total energy + Delta-G solvation = -4022.439315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.25886 -41.13029 -39.93203 -38.91586 -36.95351 -34.79490 -34.58347 -33.62486 -32.87581 -31.20539 -29.41642 -27.68830 -27.18589 -25.05350 -24.21818 -23.35631 -21.75289 -20.90728 -20.47179 -19.56150 -18.82876 -18.26158 -17.99925 -17.41541 -17.13206 -16.94848 -16.86922 -16.61008 -16.41932 -15.81637 -15.62436 -15.36458 -15.15783 -14.62383 -14.60006 -14.47896 -14.27679 -14.21400 -13.57877 -13.49348 -13.16672 -13.06757 -12.87401 -12.86575 -12.78606 -12.63936 -12.33230 -12.17284 -11.79005 -11.72849 -11.44920 -11.12777 -10.91026 -10.87398 -10.65191 -10.26700 -9.86785 -9.75914 -8.66884 -8.34244 -6.12460 0.29847 1.25222 1.28370 1.43914 1.45323 1.54960 1.57328 2.04209 2.08853 2.27648 2.54143 2.99723 3.21572 3.31714 3.44783 3.61437 3.63730 3.71500 3.85118 3.99383 4.21878 4.24553 4.25924 4.31783 4.38702 4.44425 4.58083 4.70448 4.77190 4.80947 4.82150 4.85312 5.06633 5.09105 5.16557 5.28716 5.41746 5.52318 5.55728 5.95364 6.17458 6.19200 6.21429 6.64508 6.99641 7.06882 7.11621 8.74676 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.002370 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.324337 B =11813.439489 C =12878.611933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.150 6.150 10 C -0.127 4.127 11 C 0.534 3.466 12 O -0.561 6.561 13 N -0.609 5.609 14 C 0.110 3.890 15 C -0.125 4.125 16 C 0.129 3.871 17 H 0.092 0.908 18 C -0.111 4.111 19 H 0.074 0.926 20 C -0.114 4.114 21 C 0.110 3.890 22 N -0.582 5.582 23 C 0.513 3.487 24 O -0.538 6.538 25 C 0.516 3.484 26 N -0.802 5.802 27 O -0.541 6.541 28 C 0.127 3.873 29 H 0.271 0.729 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.422 0.578 41 H 0.423 0.577 42 H 0.100 0.900 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.528 -24.904 3.830 30.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.077 5.923 10 C -0.278 4.278 11 C 0.321 3.679 12 O -0.440 6.440 13 N -0.344 5.344 14 C -0.013 4.013 15 C -0.164 4.164 16 C 0.025 3.975 17 H 0.110 0.890 18 C -0.131 4.131 19 H 0.093 0.907 20 C -0.153 4.153 21 C -0.011 4.011 22 N -0.315 5.315 23 C 0.297 3.703 24 O -0.415 6.415 25 C 0.294 3.706 26 N -0.369 5.369 27 O -0.418 6.418 28 C 0.005 3.995 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.254 0.746 41 H 0.258 0.742 42 H 0.118 0.882 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.527 -25.158 3.778 29.804 hybrid contribution 1.895 1.455 0.418 2.425 sum 17.422 -23.703 4.196 29.714 Atomic orbital electron populations 1.70172 1.07939 1.28669 1.47937 1.26117 0.95969 1.03281 0.93748 0.85019 0.77825 0.75757 0.79497 1.18586 1.20383 1.18756 1.23155 0.95305 0.91993 1.58952 0.89979 1.85546 1.10520 0.99191 1.97021 1.23412 1.03444 0.94655 1.06271 1.20110 0.86066 0.86643 0.75058 1.90676 1.17048 1.85724 1.50513 1.48276 1.06893 1.05724 1.73463 1.21932 0.77855 1.01282 1.00216 1.21769 1.02158 0.93304 0.99149 1.21317 0.92674 0.88982 0.94501 0.88994 1.22486 0.93901 0.97376 0.99315 0.90738 1.22624 0.97406 0.92123 1.03105 1.22686 0.86581 0.89851 1.01965 1.48098 1.13884 1.23396 1.46081 1.20015 0.81657 0.87130 0.81537 1.90749 1.52471 1.36255 1.62058 1.19913 0.83490 0.85998 0.81218 1.43415 1.15662 1.28681 1.49162 1.90801 1.52963 1.36019 1.62064 1.21623 0.99767 0.79473 0.98647 0.91987 0.87782 0.87303 0.88689 0.88996 0.88236 0.92728 0.87757 0.88063 0.89343 0.90495 0.74631 0.74233 0.88219 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.04 13.22 21.65 0.29 -55.76 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.64 29.55 68.60 2.03 45.66 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.55 -31.24 9.50 67.95 0.65 -30.59 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.13 -5.07 4.48 71.24 0.32 -4.75 16 11 C 0.53 19.76 7.69 87.66 0.67 20.43 16 12 O -0.56 -25.63 15.22 -3.04 -0.05 -25.67 16 13 N -0.61 -15.70 3.00 -818.06 -2.45 -18.15 16 14 C 0.11 2.17 6.22 86.68 0.54 2.71 16 15 C -0.13 -2.37 5.11 30.21 0.15 -2.22 16 16 C 0.13 2.11 2.49 45.19 0.11 2.23 16 17 H 0.09 1.29 7.94 -2.39 -0.02 1.27 16 18 C -0.11 -1.82 2.82 -10.10 -0.03 -1.85 16 19 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 20 C -0.11 -1.21 6.54 31.63 0.21 -1.01 16 21 C 0.11 1.47 5.59 86.84 0.49 1.96 16 22 N -0.58 -9.83 3.29 -793.11 -2.61 -12.44 16 23 C 0.51 9.56 7.85 87.27 0.68 10.25 16 24 O -0.54 -11.71 14.65 -3.26 -0.05 -11.75 16 25 C 0.52 8.19 8.13 87.27 0.71 8.90 16 26 N -0.80 -6.81 8.87 -174.50 -1.55 -8.36 16 27 O -0.54 -10.75 15.07 -3.23 -0.05 -10.80 16 28 C 0.13 2.55 5.98 85.89 0.51 3.07 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.74 16 30 H 0.10 3.84 7.55 -2.39 -0.02 3.82 16 31 H 0.11 3.92 7.99 -2.40 -0.02 3.90 16 32 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.09 1.92 5.84 -2.39 -0.01 1.91 16 34 H 0.10 1.95 6.56 -2.39 -0.02 1.94 16 35 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 36 H 0.10 0.73 8.12 -2.39 -0.02 0.71 16 37 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.09 1.07 7.94 -2.39 -0.02 1.05 16 39 H 0.08 1.16 7.41 -2.39 -0.02 1.15 16 40 H 0.42 2.63 8.30 -92.71 -0.77 1.86 16 41 H 0.42 1.77 8.93 -92.71 -0.83 0.95 16 42 H 0.10 1.49 8.12 -2.38 -0.02 1.47 16 43 H 0.08 2.09 7.00 -2.39 -0.02 2.08 16 Total: -1.00 -81.04 363.02 -0.64 -81.68 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -0.53 Total: 14.72 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.48 Total: 10.38 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -6.32 Total: -94.70 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -0.14 Total: -48.22 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -81.04 -0.64 -81.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533055559.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.800 kcal (2) G-P(sol) polarization free energy of solvation -81.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds