Wall clock time and date at job start Sat Apr 11 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34662 * 125.80041 * 2 1 4 4 H 0.96997 * 124.85046 * 0.02562 * 3 2 1 5 5 C 1.36440 * 110.29664 * 180.29355 * 3 2 1 6 6 C 1.34490 * 108.85859 * 359.74427 * 5 3 2 7 7 C 1.36768 * 125.80178 * 179.86063 * 2 1 3 8 8 C 1.47260 * 126.94227 * 359.97438 * 7 2 1 9 9 O 1.21622 * 120.00178 * 359.70487 * 8 7 2 10 10 N 1.34783 * 119.99793 * 179.70783 * 8 7 2 11 11 C 1.46497 * 119.99638 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46900 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.47164 * 60.00014 * 12 11 10 14 14 O 1.42903 * 109.47171 * 299.99748 * 12 11 10 15 15 C 1.53003 * 109.47376 * 180.02562 * 12 11 10 16 16 N 1.46494 * 109.47283 * 185.00021 * 15 12 11 17 17 C 1.34779 * 119.99921 * 179.97438 * 16 15 12 18 18 O 1.21281 * 120.00109 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99840 * 179.97438 * 17 16 15 20 20 S 1.80998 * 109.46956 * 180.02562 * 19 17 16 21 21 C 1.76202 * 100.00083 * 180.02562 * 20 19 17 22 22 H 1.08003 * 120.00060 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00072 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00195 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99904 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47069 * 90.00667 * 25 23 21 27 27 H 1.48502 * 109.47299 * 210.00539 * 25 23 21 28 28 H 1.48501 * 109.47224 * 330.00519 * 25 23 21 29 29 H 1.08995 * 109.47345 * 270.13079 * 1 2 3 30 30 H 1.09003 * 109.46882 * 30.13957 * 1 2 3 31 31 H 1.09002 * 109.46793 * 150.13386 * 1 2 3 32 32 H 1.08004 * 125.57186 * 179.76731 * 5 3 2 33 33 H 1.08004 * 126.83511 * 180.02562 * 6 5 3 34 34 H 0.96996 * 120.00052 * 0.02562 * 10 8 7 35 35 H 1.08999 * 109.47200 * 60.00094 * 11 10 8 36 36 H 1.08997 * 109.47487 * 300.00148 * 11 10 8 37 37 H 0.96700 * 114.00311 * 300.00378 * 14 12 11 38 38 H 1.09005 * 109.46682 * 304.99749 * 15 12 11 39 39 H 1.08999 * 109.47221 * 64.99915 * 15 12 11 40 40 H 0.96999 * 120.00388 * 359.97438 * 16 15 12 41 41 H 1.08992 * 109.47506 * 300.00283 * 19 17 16 42 42 H 1.08999 * 109.46876 * 60.00368 * 19 17 16 43 43 H 0.97000 * 120.00215 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6095 0.7275 -0.0066 6 6 3.6882 -0.6151 -0.0052 7 6 2.3071 -1.1092 0.0027 8 6 1.8703 -2.5156 0.0066 9 8 0.6840 -2.7839 0.0132 10 7 2.7851 -3.5054 0.0030 11 6 2.3505 -4.9044 0.0075 12 6 3.5768 -5.8193 0.0027 13 1 4.1798 -5.6233 0.8893 14 8 4.3554 -5.5662 -1.1685 15 6 3.1230 -7.2805 0.0068 16 7 4.2927 -8.1548 0.1225 17 6 4.1340 -9.4930 0.1470 18 8 3.0228 -9.9734 0.0736 19 6 5.3374 -10.3924 0.2655 20 16 4.8005 -12.1210 0.2704 21 6 6.3613 -12.9258 0.4151 22 1 7.2675 -12.3408 0.4700 23 6 6.4261 -14.3115 0.4586 24 7 5.3217 -15.0246 0.3912 25 14 8.0809 -15.1647 0.6113 26 1 8.4105 -15.3523 2.0471 27 1 8.0192 -16.4882 -0.0594 28 1 9.1285 -14.3320 -0.0324 29 1 -0.3634 0.0023 1.0276 30 1 -0.3633 0.8888 -0.5160 31 1 -0.3633 -0.8912 -0.5118 32 1 4.4497 1.4061 -0.0116 33 1 4.5891 -1.2109 -0.0089 34 1 3.7311 -3.2914 -0.0018 35 1 1.7471 -5.1003 -0.8788 36 1 1.7570 -5.0976 0.9010 37 1 3.8811 -5.7203 -1.9971 38 1 2.4564 -7.4516 0.8521 39 1 2.5959 -7.4999 -0.9218 40 1 5.1814 -7.7707 0.1816 41 1 6.0034 -10.2217 -0.5802 42 1 5.8650 -10.1729 1.1937 43 1 5.3671 -15.9931 0.4219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533181713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:45 Heat of formation + Delta-G solvation = -89.012275 kcal Electronic energy + Delta-G solvation = -25462.325547 eV Core-core repulsion = 21441.164197 eV Total energy + Delta-G solvation = -4021.161350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66550 -39.75062 -39.11302 -37.79861 -34.59770 -34.15274 -32.41651 -31.97582 -31.72920 -30.61309 -28.95569 -26.91807 -25.67193 -25.27833 -22.72352 -22.19323 -21.09005 -20.33006 -19.80526 -18.13376 -17.93917 -17.36171 -16.67361 -16.46681 -16.13989 -15.60169 -15.51989 -15.22913 -14.98190 -14.79102 -14.42243 -14.21882 -13.98731 -13.79046 -13.68245 -13.45681 -13.11111 -13.07519 -13.01240 -12.95565 -12.56159 -12.52430 -11.99650 -11.74129 -11.41735 -11.05268 -11.01234 -10.77727 -10.61114 -10.10007 -9.80233 -9.44097 -9.41596 -9.21516 -9.06074 -8.92119 -8.61169 -8.22514 -6.48864 -6.20479 -3.91078 1.37566 1.98898 2.58408 2.90979 3.09204 3.15606 3.23500 3.27818 3.29622 3.34555 3.70540 4.01540 4.21626 4.37502 4.38494 4.46209 4.57052 4.67406 4.75279 4.81117 5.09234 5.14687 5.17456 5.21208 5.22410 5.37412 5.41945 5.52802 5.56021 5.67316 5.77647 5.78462 5.90896 6.15417 6.16130 6.30438 6.47317 6.56405 6.95887 7.19249 7.33945 7.60819 7.69911 8.08764 8.36464 8.60381 9.24862 10.86954 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.036240 B = 0.001482 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.431350 B =18894.008290 C =19526.054270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.107 3.893 3 N -0.554 5.554 4 H 0.416 0.584 5 C -0.017 4.017 6 C -0.167 4.167 7 C -0.238 4.238 8 C 0.591 3.409 9 O -0.551 6.551 10 N -0.720 5.720 11 C 0.092 3.908 12 C 0.086 3.914 13 H 0.113 0.887 14 O -0.555 6.555 15 C 0.093 3.907 16 N -0.733 5.733 17 C 0.532 3.468 18 O -0.518 6.518 19 C -0.153 4.153 20 S -0.061 6.061 21 C -0.536 4.536 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.170 0.830 33 H 0.146 0.854 34 H 0.405 0.595 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.381 0.619 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.402 0.598 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.552 36.024 -1.236 36.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.011 4.011 3 N -0.149 5.149 4 H 0.253 0.747 5 C -0.144 4.144 6 C -0.191 4.191 7 C -0.248 4.248 8 C 0.380 3.620 9 O -0.431 6.431 10 N -0.372 5.372 11 C -0.033 4.033 12 C 0.026 3.974 13 H 0.131 0.869 14 O -0.361 6.361 15 C -0.032 4.032 16 N -0.389 5.389 17 C 0.318 3.682 18 O -0.392 6.392 19 C -0.303 4.303 20 S 0.166 5.834 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.187 0.813 33 H 0.164 0.836 34 H 0.240 0.760 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.230 0.770 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.237 0.763 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.902 35.094 -0.921 35.599 hybrid contribution 2.816 0.604 -0.128 2.883 sum -3.087 35.698 -1.049 35.847 Atomic orbital electron populations 1.20597 0.86902 1.04301 1.03590 1.20383 0.93793 0.85643 1.01259 1.41628 1.06320 1.08475 1.58505 0.74726 1.21750 0.85670 0.96524 1.10499 1.22061 0.95775 0.93727 1.07543 1.20086 0.93313 0.91938 1.19498 1.17338 0.85179 0.84104 0.75334 1.90751 1.16665 1.84448 1.51225 1.45574 1.10202 1.05240 1.76200 1.21915 0.96695 0.80820 1.03845 1.22397 0.92472 0.92388 0.90096 0.86929 1.86577 1.42627 1.90987 1.15931 1.21828 0.89481 0.88449 1.03480 1.45849 1.09627 1.05909 1.77471 1.20332 0.90944 0.81731 0.75208 1.90709 1.26283 1.74701 1.47551 1.23522 0.98747 1.03146 1.04925 1.85397 1.12115 0.89773 1.96123 1.22875 0.93013 0.94040 1.58484 0.90902 1.24990 0.97682 0.96330 0.94558 1.70019 1.26949 1.06556 1.46774 0.86166 0.82263 0.78663 0.78388 1.20279 1.20756 1.19696 0.90331 0.91808 0.87941 0.81285 0.83626 0.76006 0.90650 0.90054 0.77047 0.90344 0.90909 0.76343 0.89145 0.89193 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 9.88 36.01 0.36 -0.26 16 2 C 0.11 0.81 7.17 -81.88 -0.59 0.22 16 3 N -0.55 -2.62 5.90 -9.10 -0.05 -2.67 16 4 H 0.42 0.64 8.96 -40.82 -0.37 0.27 16 5 C -0.02 -0.09 11.89 -16.83 -0.20 -0.29 16 6 C -0.17 -1.12 10.56 -37.50 -0.40 -1.51 16 7 C -0.24 -2.14 6.29 -103.35 -0.65 -2.79 16 8 C 0.59 6.27 7.81 -12.59 -0.10 6.17 16 9 O -0.55 -7.45 14.82 5.26 0.08 -7.38 16 10 N -0.72 -5.86 5.44 -61.44 -0.33 -6.19 16 11 C 0.09 0.73 5.34 -4.04 -0.02 0.70 16 12 C 0.09 0.62 3.09 -26.73 -0.08 0.54 16 13 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 14 O -0.56 -4.09 13.03 -35.23 -0.46 -4.55 16 15 C 0.09 0.96 5.31 -4.04 -0.02 0.94 16 16 N -0.73 -9.36 5.50 -60.29 -0.33 -9.69 16 17 C 0.53 9.80 7.85 -10.98 -0.09 9.71 16 18 O -0.52 -11.70 15.86 5.56 0.09 -11.61 16 19 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 22 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 25 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 0.88 6.47 -51.93 -0.34 0.54 16 32 H 0.17 0.32 8.06 -52.48 -0.42 -0.10 16 33 H 0.15 0.71 7.70 -52.48 -0.40 0.31 16 34 H 0.40 2.65 7.47 -40.82 -0.30 2.35 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.38 2.05 9.05 45.56 0.41 2.47 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.40 4.20 8.47 -40.82 -0.35 3.85 16 41 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -38.80 387.12 -8.17 -46.97 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.12 Total: 4.66 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.37 Total: -2.42 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.01 Total: -44.06 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.29 Total: -23.53 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.80 -8.17 -46.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533181713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.047 kcal (2) G-P(sol) polarization free energy of solvation -38.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds