Wall clock time and date at job start Sat Apr 11 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86809 * 119.99770 * 2 1 4 4 H 1.48503 * 109.46848 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47054 * 300.00289 * 3 2 1 6 6 H 1.48498 * 109.46913 * 60.00218 * 3 2 1 7 7 C 1.38790 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99781 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00158 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46952 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99920 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99913 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00223 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47289 * 185.09417 * 14 13 11 16 16 N 1.46494 * 115.54951 * 29.82903 * 15 14 13 17 17 C 1.34783 * 119.99835 * 65.61431 * 16 15 14 18 18 O 1.21278 * 120.00011 * 355.08370 * 17 16 15 19 19 C 1.50698 * 119.99615 * 175.07684 * 17 16 15 20 20 H 1.09000 * 110.21826 * 320.47449 * 19 17 16 21 21 C 1.54476 * 110.24327 * 82.50152 * 19 17 16 22 22 C 1.54634 * 101.76494 * 144.41214 * 21 19 17 23 23 C 1.51273 * 104.19640 * 335.20036 * 22 21 19 24 24 O 1.21281 * 124.94729 * 196.27489 * 23 22 21 25 25 N 1.34423 * 110.11615 * 16.25570 * 23 22 21 26 26 C 1.53001 * 117.49549 * 244.12139 * 15 14 13 27 27 C 1.52991 * 60.00022 * 252.51287 * 26 15 14 28 28 H 0.96997 * 120.00175 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46976 * 59.99883 * 10 9 7 30 30 H 1.08995 * 109.47174 * 300.00173 * 10 9 7 31 31 H 0.96995 * 119.99827 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.47103 * 65.09254 * 14 13 11 33 33 H 1.08999 * 109.46665 * 305.09856 * 14 13 11 34 34 H 0.96999 * 120.00033 * 245.61128 * 16 15 14 35 35 H 1.08997 * 110.97257 * 262.52707 * 21 19 17 36 36 H 1.08994 * 110.97264 * 26.29546 * 21 19 17 37 37 H 1.08997 * 110.48404 * 216.51804 * 22 21 19 38 38 H 1.09001 * 110.48615 * 93.87898 * 22 21 19 39 39 H 0.96999 * 124.35309 * 180.43817 * 25 23 22 40 40 H 1.08997 * 117.50216 * 0.02562 * 26 15 14 41 41 H 1.09004 * 117.49872 * 145.02267 * 26 15 14 42 42 H 1.09008 * 117.50156 * 252.51281 * 27 26 15 43 43 H 1.09002 * 117.50040 * 107.49296 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2019 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0011 13 7 2.8444 -6.3431 -0.0008 14 6 2.3308 -7.7150 -0.0019 15 6 3.4974 -8.6965 0.1269 16 7 4.6593 -8.2027 0.8700 17 6 4.5523 -7.9324 2.1861 18 8 3.4742 -8.0121 2.7359 19 6 5.7724 -7.5311 2.9744 20 1 6.6349 -8.1177 2.6582 21 6 6.0536 -6.0230 2.7934 22 6 6.5818 -5.6306 4.1927 23 6 5.9819 -6.6650 5.1192 24 8 5.9159 -6.5619 6.3259 25 7 5.5322 -7.7150 4.4106 26 6 3.7588 -9.6411 -1.0479 27 6 3.1591 -10.1834 0.2509 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7312 0.8894 30 1 3.1246 -3.7312 -0.8905 31 1 3.8011 -6.1834 -0.0004 32 1 1.7991 -7.9031 -0.9347 33 1 1.6491 -7.8484 0.8381 34 1 5.5056 -8.0704 0.4149 35 1 6.8128 -5.8567 2.0292 36 1 5.1381 -5.4812 2.5560 37 1 6.2396 -4.6317 4.4633 38 1 7.6704 -5.6816 4.2177 39 1 5.1035 -8.4939 4.7985 40 1 3.1000 -9.5631 -1.9128 41 1 4.7956 -9.8954 -1.2682 42 1 3.8014 -10.7945 0.8852 43 1 2.1055 -10.4625 0.2407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535129641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:48 Heat of formation + Delta-G solvation = -75.256563 kcal Electronic energy + Delta-G solvation = -27371.100192 eV Core-core repulsion = 23350.535335 eV Total energy + Delta-G solvation = -4020.564857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.27009 -40.02398 -38.90544 -37.81226 -36.36736 -33.98610 -33.46614 -32.43215 -31.68302 -29.80142 -28.70418 -26.41318 -25.41854 -23.61446 -22.99490 -21.64666 -20.85727 -20.38089 -20.13809 -18.31191 -17.93853 -17.60482 -17.03081 -16.38355 -16.20850 -15.57869 -15.35057 -15.09495 -14.98048 -14.81033 -14.68915 -14.13849 -13.96242 -13.88508 -13.62089 -13.43074 -13.25126 -13.08765 -12.77050 -12.56439 -12.33942 -12.02395 -11.82843 -11.58436 -11.41482 -11.07699 -11.02624 -10.76827 -10.76040 -10.35578 -10.18725 -9.82342 -9.58794 -9.49203 -9.38781 -9.08125 -8.84875 -8.23073 -6.50132 -6.21996 -3.92618 2.06814 2.16034 2.43874 2.98420 3.04392 3.09958 3.20952 3.21249 3.28729 3.32886 3.69260 3.85167 3.86803 4.11945 4.19644 4.25188 4.36438 4.37520 4.50158 4.60567 4.88142 5.05952 5.13263 5.15600 5.17659 5.22894 5.37321 5.43855 5.45586 5.48860 5.61727 5.64334 5.80245 5.87193 6.03246 6.09496 6.33561 6.59645 6.62803 6.93767 7.58814 7.68813 7.72699 7.90774 8.34518 8.61606 9.23278 10.85492 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009313 B = 0.003283 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.984188 B = 8526.530367 C =10800.524093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.151 4.151 11 C 0.531 3.469 12 O -0.515 6.515 13 N -0.731 5.731 14 C 0.156 3.844 15 C 0.089 3.911 16 N -0.700 5.700 17 C 0.506 3.494 18 O -0.500 6.500 19 C 0.116 3.884 20 H 0.106 0.894 21 C -0.126 4.126 22 C -0.155 4.155 23 C 0.524 3.476 24 O -0.527 6.527 25 N -0.711 5.711 26 C -0.165 4.165 27 C -0.164 4.164 28 H 0.268 0.732 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.393 0.607 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.404 0.596 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.415 0.585 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.401 -21.102 -1.321 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.302 4.302 11 C 0.317 3.683 12 O -0.389 6.389 13 N -0.386 5.386 14 C 0.031 3.969 15 C 0.001 3.999 16 N -0.354 5.354 17 C 0.290 3.710 18 O -0.372 6.372 19 C 0.006 3.994 20 H 0.123 0.877 21 C -0.164 4.164 22 C -0.195 4.195 23 C 0.311 3.689 24 O -0.403 6.403 25 N -0.368 5.368 26 C -0.202 4.202 27 C -0.202 4.202 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.227 0.773 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.240 0.760 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.255 0.745 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.450 -21.234 -0.273 26.261 hybrid contribution 2.658 0.947 -0.193 2.828 sum 18.107 -20.286 -0.466 27.196 Atomic orbital electron populations 1.70027 1.05962 1.27360 1.46866 1.24990 0.95013 0.99022 0.94535 0.86125 0.79546 0.81931 0.77924 1.19627 1.20573 1.20545 1.22896 0.94895 0.91656 1.58919 0.90916 1.85461 1.04810 0.96261 1.96678 1.23504 1.06606 0.95451 1.04625 1.20290 0.86545 0.86208 0.75228 1.90709 1.15354 1.85525 1.47339 1.45778 1.09682 1.05110 1.78007 1.20962 0.93297 0.79936 1.02716 1.20864 0.89177 0.90974 0.98889 1.45295 1.13025 1.68299 1.08742 1.20772 0.90711 0.77322 0.82229 1.90818 1.28088 1.48936 1.69381 1.21578 0.95985 0.99417 0.82374 0.87671 1.22682 1.03858 0.91647 0.98215 1.22377 1.02799 1.00577 0.93768 1.20850 0.77121 0.83017 0.87946 1.90786 1.57418 1.78460 1.13622 1.45937 1.62174 1.22633 1.06007 1.23476 1.03019 1.01098 0.92632 1.23356 1.02945 0.94437 0.99503 0.92219 0.89518 0.89337 0.77315 0.90836 0.90058 0.76017 0.87822 0.88832 0.87085 0.87232 0.74534 0.87144 0.87988 0.88238 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 11 C 0.53 9.96 7.85 -10.98 -0.09 9.87 16 12 O -0.52 -11.95 15.86 5.56 0.09 -11.86 16 13 N -0.73 -9.55 5.31 -60.30 -0.32 -9.87 16 14 C 0.16 1.83 5.26 -4.05 -0.02 1.81 16 15 C 0.09 0.66 2.12 -131.83 -0.28 0.38 16 16 N -0.70 -3.91 4.23 -47.61 -0.20 -4.11 16 17 C 0.51 4.20 6.81 -10.98 -0.07 4.12 16 18 O -0.50 -6.78 15.93 5.56 0.09 -6.69 16 19 C 0.12 0.67 3.93 -68.16 -0.27 0.40 16 20 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 21 C -0.13 -0.67 6.67 -25.10 -0.17 -0.83 16 22 C -0.16 -1.08 6.86 -26.74 -0.18 -1.26 16 23 C 0.52 5.74 8.43 -10.86 -0.09 5.65 16 24 O -0.53 -8.23 18.03 5.56 0.10 -8.13 16 25 N -0.71 -6.24 5.47 -53.88 -0.29 -6.53 16 26 C -0.16 -0.81 10.10 -26.73 -0.27 -1.08 16 27 C -0.16 -1.06 10.18 -26.74 -0.27 -1.33 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 30 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 31 H 0.39 3.89 7.59 -40.82 -0.31 3.58 16 32 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 33 H 0.08 1.22 7.94 -51.93 -0.41 0.81 16 34 H 0.40 0.82 8.83 -40.82 -0.36 0.46 16 35 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.09 0.71 7.90 -51.93 -0.41 0.30 16 37 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.41 3.69 8.96 -40.82 -0.37 3.32 16 40 H 0.11 0.53 8.03 -51.93 -0.42 0.11 16 41 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 43 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -40.85 385.38 -8.56 -49.41 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.03 Total: 2.87 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -1.29 Total: 2.12 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.08 Total: -45.95 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: 0.28 Total: -26.68 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -40.85 -8.56 -49.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535129641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.843 kcal (2) G-P(sol) polarization free energy of solvation -40.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds