Wall clock time and date at job start Sat Apr 11 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86809 * 119.99770 * 2 1 4 4 H 1.48503 * 109.46848 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47054 * 300.00289 * 3 2 1 6 6 H 1.48498 * 109.46913 * 60.00218 * 3 2 1 7 7 C 1.38790 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99781 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00158 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46952 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99920 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99913 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00223 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47289 * 185.09417 * 14 13 11 16 16 N 1.46494 * 115.54951 * 29.82903 * 15 14 13 17 17 C 1.34783 * 119.99835 * 65.61431 * 16 15 14 18 18 O 1.21278 * 120.00011 * 355.08370 * 17 16 15 19 19 C 1.50698 * 119.99615 * 175.07684 * 17 16 15 20 20 H 1.09000 * 110.21826 * 320.47449 * 19 17 16 21 21 C 1.54476 * 110.24327 * 82.50152 * 19 17 16 22 22 C 1.54634 * 101.76494 * 144.41214 * 21 19 17 23 23 C 1.51273 * 104.19640 * 335.20036 * 22 21 19 24 24 O 1.21281 * 124.94729 * 196.27489 * 23 22 21 25 25 N 1.34423 * 110.11615 * 16.25570 * 23 22 21 26 26 C 1.53001 * 117.49549 * 244.12139 * 15 14 13 27 27 C 1.52991 * 60.00022 * 252.51287 * 26 15 14 28 28 H 0.96997 * 120.00175 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46976 * 59.99883 * 10 9 7 30 30 H 1.08995 * 109.47174 * 300.00173 * 10 9 7 31 31 H 0.96995 * 119.99827 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.47103 * 65.09254 * 14 13 11 33 33 H 1.08999 * 109.46665 * 305.09856 * 14 13 11 34 34 H 0.96999 * 120.00033 * 245.61128 * 16 15 14 35 35 H 1.08997 * 110.97257 * 262.52707 * 21 19 17 36 36 H 1.08994 * 110.97264 * 26.29546 * 21 19 17 37 37 H 1.08997 * 110.48404 * 216.51804 * 22 21 19 38 38 H 1.09001 * 110.48615 * 93.87898 * 22 21 19 39 39 H 0.96999 * 124.35309 * 180.43817 * 25 23 22 40 40 H 1.08997 * 117.50216 * 0.02562 * 26 15 14 41 41 H 1.09004 * 117.49872 * 145.02267 * 26 15 14 42 42 H 1.09008 * 117.50156 * 252.51281 * 27 26 15 43 43 H 1.09002 * 117.50040 * 107.49296 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2019 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0011 13 7 2.8444 -6.3431 -0.0008 14 6 2.3308 -7.7150 -0.0019 15 6 3.4974 -8.6965 0.1269 16 7 4.6593 -8.2027 0.8700 17 6 4.5523 -7.9324 2.1861 18 8 3.4742 -8.0121 2.7359 19 6 5.7724 -7.5311 2.9744 20 1 6.6349 -8.1177 2.6582 21 6 6.0536 -6.0230 2.7934 22 6 6.5818 -5.6306 4.1927 23 6 5.9819 -6.6650 5.1192 24 8 5.9159 -6.5619 6.3259 25 7 5.5322 -7.7150 4.4106 26 6 3.7588 -9.6411 -1.0479 27 6 3.1591 -10.1834 0.2509 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7312 0.8894 30 1 3.1246 -3.7312 -0.8905 31 1 3.8011 -6.1834 -0.0004 32 1 1.7991 -7.9031 -0.9347 33 1 1.6491 -7.8484 0.8381 34 1 5.5056 -8.0704 0.4149 35 1 6.8128 -5.8567 2.0292 36 1 5.1381 -5.4812 2.5560 37 1 6.2396 -4.6317 4.4633 38 1 7.6704 -5.6816 4.2177 39 1 5.1035 -8.4939 4.7985 40 1 3.1000 -9.5631 -1.9128 41 1 4.7956 -9.8954 -1.2682 42 1 3.8014 -10.7945 0.8852 43 1 2.1055 -10.4625 0.2407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535129641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:47 Heat of formation + Delta-G solvation = -110.165601 kcal Electronic energy + Delta-G solvation = -27372.613961 eV Core-core repulsion = 23350.535335 eV Total energy + Delta-G solvation = -4022.078627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.94739 -40.92955 -40.15236 -38.59444 -37.16841 -35.27395 -34.57266 -34.09257 -32.24964 -31.30168 -29.32861 -27.85299 -27.24969 -24.19213 -23.45148 -22.23585 -21.81564 -21.52413 -20.87071 -19.83623 -18.95187 -18.25779 -18.03259 -17.75226 -17.01083 -16.87342 -16.61989 -16.46774 -16.11235 -15.84965 -15.61937 -15.38258 -14.87740 -14.72209 -14.65938 -14.60859 -14.35739 -14.14719 -13.65302 -13.47998 -13.39439 -13.15068 -12.90975 -12.90669 -12.58560 -12.39626 -12.11748 -11.99088 -11.70271 -11.45391 -11.15243 -11.11250 -11.01045 -10.98578 -10.26825 -10.25707 -10.17477 -10.01080 -8.66868 -8.33670 -6.12262 1.26628 1.40267 1.42885 1.44816 1.48188 1.58299 1.60227 1.81638 2.24425 2.28471 2.41880 2.72307 3.01062 3.28655 3.32701 3.33947 3.53930 3.73629 3.84015 3.89637 4.00064 4.03260 4.11049 4.27967 4.46430 4.47897 4.52466 4.61440 4.72232 4.78051 4.82588 4.96198 5.01349 5.04688 5.21454 5.30287 5.43085 5.51715 5.67290 5.88496 6.21017 6.45967 6.48823 7.07730 7.09864 7.21254 7.23308 8.75924 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009313 B = 0.003283 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.984188 B = 8526.530367 C =10800.524093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.252 1.252 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.087 0.913 9 S -0.158 6.158 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.569 6.569 13 N -0.701 5.701 14 C 0.156 3.844 15 C 0.071 3.929 16 N -0.677 5.677 17 C 0.504 3.496 18 O -0.563 6.563 19 C 0.119 3.881 20 H 0.159 0.841 21 C -0.120 4.120 22 C -0.149 4.149 23 C 0.509 3.491 24 O -0.590 6.590 25 N -0.712 5.712 26 C -0.129 4.129 27 C -0.171 4.171 28 H 0.270 0.730 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.413 0.587 32 H 0.076 0.924 33 H 0.040 0.960 34 H 0.428 0.572 35 H 0.155 0.845 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.143 0.857 39 H 0.410 0.590 40 H 0.114 0.886 41 H 0.134 0.866 42 H 0.107 0.893 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.087 -21.646 -3.508 31.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.175 1.175 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.690 4.690 8 H 0.105 0.895 9 S 0.069 5.931 10 C -0.275 4.275 11 C 0.315 3.685 12 O -0.448 6.448 13 N -0.355 5.355 14 C 0.031 3.969 15 C -0.017 4.017 16 N -0.332 5.332 17 C 0.289 3.711 18 O -0.439 6.439 19 C 0.011 3.989 20 H 0.176 0.824 21 C -0.158 4.158 22 C -0.189 4.189 23 C 0.297 3.703 24 O -0.470 6.470 25 N -0.366 5.366 26 C -0.166 4.166 27 C -0.210 4.210 28 H 0.079 0.921 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.250 0.750 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.268 0.732 35 H 0.173 0.827 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.161 0.839 39 H 0.249 0.751 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.126 0.874 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 20.239 -21.828 -2.545 29.876 hybrid contribution 1.186 0.936 0.462 1.580 sum 21.426 -20.892 -2.083 29.998 Atomic orbital electron populations 1.70204 1.08118 1.28508 1.48199 1.26155 0.95929 1.03424 0.93750 0.84895 0.78843 0.76212 0.77927 1.17504 1.19948 1.20307 1.23238 0.95433 0.91700 1.58630 0.89509 1.85716 1.10806 0.99538 1.97041 1.23321 1.03476 0.93932 1.06803 1.20178 0.86256 0.86904 0.75121 1.90696 1.17699 1.86148 1.50234 1.45449 1.10040 1.04607 1.75388 1.20979 0.94984 0.79806 1.01136 1.20618 0.88814 0.90390 1.01893 1.45094 1.13420 1.66881 1.07791 1.21307 0.90594 0.76251 0.82919 1.90819 1.30551 1.51787 1.70736 1.21959 0.96188 1.00740 0.80015 0.82365 1.22810 1.04102 0.90440 0.98403 1.22430 1.04523 0.98441 0.93464 1.21673 0.76780 0.84112 0.87723 1.90740 1.60103 1.79805 1.16371 1.46119 1.60945 1.21885 1.07610 1.23598 1.04707 0.96956 0.91323 1.23406 1.02882 0.93382 1.01324 0.92085 0.87553 0.86527 0.74996 0.90593 0.94151 0.73213 0.82733 0.91418 0.88159 0.83896 0.75144 0.86789 0.84766 0.87436 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.46 13.22 21.65 0.29 -56.17 16 2 C 0.01 0.67 5.49 84.85 0.47 1.14 16 3 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 4 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.54 -30.60 9.50 67.95 0.65 -29.96 16 8 H 0.09 4.47 7.80 -2.91 -0.02 4.45 16 9 S -0.16 -8.83 20.57 -56.49 -1.16 -9.99 16 10 C -0.12 -4.82 6.16 71.24 0.44 -4.38 16 11 C 0.53 19.86 7.85 87.66 0.69 20.55 16 12 O -0.57 -27.54 15.86 -3.02 -0.05 -27.59 16 13 N -0.70 -17.38 5.31 -463.07 -2.46 -19.84 16 14 C 0.16 3.61 5.26 86.38 0.45 4.07 16 15 C 0.07 0.89 2.12 3.60 0.01 0.90 16 16 N -0.68 -5.04 4.23 -422.94 -1.79 -6.83 16 17 C 0.50 7.25 6.81 87.66 0.60 7.84 16 18 O -0.56 -15.39 15.93 -3.02 -0.05 -15.44 16 19 C 0.12 0.96 3.93 44.70 0.18 1.14 16 20 H 0.16 -0.28 8.14 -2.39 -0.02 -0.30 16 21 C -0.12 -0.80 6.67 31.65 0.21 -0.59 16 22 C -0.15 -1.72 6.86 30.59 0.21 -1.51 16 23 C 0.51 11.07 8.43 87.89 0.74 11.81 16 24 O -0.59 -19.36 18.03 -3.03 -0.05 -19.41 16 25 N -0.71 -11.89 5.47 -442.98 -2.42 -14.31 16 26 C -0.13 -0.73 10.10 30.59 0.31 -0.42 16 27 C -0.17 -1.88 10.18 30.59 0.31 -1.57 16 28 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 29 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 30 H 0.12 3.88 8.14 -2.40 -0.02 3.86 16 31 H 0.41 6.84 7.59 -92.71 -0.70 6.14 16 32 H 0.08 1.72 7.88 -2.39 -0.02 1.70 16 33 H 0.04 1.29 7.94 -2.39 -0.02 1.27 16 34 H 0.43 -0.77 8.83 -92.71 -0.82 -1.59 16 35 H 0.15 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H 0.07 0.85 7.90 -2.39 -0.02 0.83 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.41 7.43 8.96 -92.71 -0.83 6.60 16 40 H 0.11 0.66 8.03 -2.39 -0.02 0.64 16 41 H 0.13 -0.01 8.14 -2.38 -0.02 -0.03 16 42 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -98.96 385.38 -1.70 -100.65 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -1.28 Total: 14.75 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.25 Total: 9.03 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -6.39 Total: -97.15 kcal Atomic # 8 Polarization: -62.29 SS G_CDS: -0.15 Total: -62.44 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -98.96 -1.70 -100.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535129641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.514 kcal (2) G-P(sol) polarization free energy of solvation -98.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds