Wall clock time and date at job start Sat Apr 11 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99849 * 2 1 4 4 H 1.48507 * 109.47007 * 239.99657 * 3 2 1 5 5 H 1.48497 * 109.47240 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47054 * 120.00119 * 3 2 1 7 7 C 1.38801 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99234 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00445 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00057 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47005 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00260 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99911 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99925 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46932 * 174.90937 * 14 13 11 16 16 N 1.46501 * 115.55248 * 324.96947 * 15 14 13 17 17 C 1.34774 * 119.99667 * 279.59097 * 16 15 14 18 18 O 1.21282 * 120.00302 * 354.99453 * 17 16 15 19 19 C 1.50703 * 119.99972 * 174.99064 * 17 16 15 20 20 H 1.09002 * 110.43496 * 298.91516 * 19 17 16 21 21 C 1.54856 * 110.58377 * 176.29927 * 19 17 16 22 22 C 1.54478 * 101.65867 * 216.46238 * 21 19 17 23 23 N 1.46760 * 105.55169 * 25.43603 * 22 21 19 24 24 C 1.34412 * 111.30203 * 342.93740 * 23 22 21 25 25 O 1.21282 * 124.94199 * 180.42805 * 24 23 22 26 26 C 1.52997 * 117.51368 * 110.66817 * 15 14 13 27 27 C 1.52993 * 117.49575 * 179.29610 * 15 14 13 28 28 H 0.97004 * 120.00367 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.46972 * 60.00197 * 10 9 7 30 30 H 1.08995 * 109.47683 * 299.99975 * 10 9 7 31 31 H 0.97002 * 119.99599 * 359.97438 * 13 11 10 32 32 H 1.09000 * 109.46844 * 54.91093 * 14 13 11 33 33 H 1.08994 * 109.46904 * 294.91008 * 14 13 11 34 34 H 0.96993 * 120.00091 * 99.59024 * 16 15 14 35 35 H 1.08991 * 111.03753 * 98.37005 * 21 19 17 36 36 H 1.08998 * 110.99573 * 334.53565 * 21 19 17 37 37 H 1.08997 * 110.24906 * 266.38944 * 22 21 19 38 38 H 1.09010 * 110.24247 * 144.48115 * 22 21 19 39 39 H 0.97005 * 124.35040 * 162.96317 * 23 22 21 40 40 H 1.09007 * 117.50106 * 214.96694 * 26 15 14 41 41 H 1.08996 * 117.50349 * 359.97438 * 26 15 14 42 42 H 1.09003 * 117.50479 * 359.97438 * 27 15 14 43 43 H 1.09005 * 117.49756 * 144.99882 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3432 0.0018 14 6 2.3303 -7.7151 0.0019 15 6 3.4971 -8.6966 -0.1254 16 7 4.6107 -8.2490 -0.9655 17 6 4.5275 -8.3536 -2.3066 18 8 3.5713 -8.9006 -2.8140 19 6 5.6225 -7.7909 -3.1757 20 1 5.7116 -6.7148 -3.0267 21 6 5.3530 -8.1112 -4.6667 22 6 6.7824 -8.3643 -5.1949 23 7 7.5632 -8.7915 -4.0280 24 6 6.9381 -8.4771 -2.8804 25 8 7.3665 -8.7094 -1.7698 26 6 3.8338 -9.5564 1.0946 27 6 3.1666 -10.1904 -0.1276 28 1 -0.4851 0.8400 0.0004 29 1 3.1244 -3.7313 0.8906 30 1 3.1244 -3.7314 -0.8894 31 1 3.8008 -6.1835 0.0015 32 1 1.6501 -7.8484 -0.8394 33 1 1.7971 -7.9033 0.9337 34 1 5.4078 -7.8772 -0.5566 35 1 4.8948 -7.2616 -5.1727 36 1 4.7356 -9.0037 -4.7690 37 1 7.1984 -7.4471 -5.6118 38 1 6.7718 -9.1503 -5.9501 39 1 8.4206 -9.2425 -4.0784 40 1 4.8838 -9.7890 1.2721 41 1 3.2243 -9.4226 1.9883 42 1 2.1179 -10.4741 -0.0379 43 1 3.7777 -10.8402 -0.7542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535131246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:51 Heat of formation + Delta-G solvation = -78.026222 kcal Electronic energy + Delta-G solvation = -27136.815947 eV Core-core repulsion = 23116.130988 eV Total energy + Delta-G solvation = -4020.684959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.37043 -39.90284 -38.86552 -37.61039 -36.75041 -33.92273 -33.30646 -32.42425 -31.76815 -29.74471 -28.41933 -26.37214 -25.40310 -23.55346 -22.79976 -22.14173 -20.73052 -20.27361 -19.79468 -18.07387 -17.87698 -17.71845 -16.97616 -16.70416 -16.27514 -15.52595 -15.38203 -15.04039 -14.89552 -14.79798 -14.51207 -14.26761 -14.11432 -13.86581 -13.69052 -13.31056 -13.14628 -13.04940 -12.71981 -12.54695 -12.24493 -11.87853 -11.72617 -11.66092 -11.20818 -11.04202 -11.03855 -10.76893 -10.62133 -10.36218 -10.08786 -9.82868 -9.68742 -9.46860 -9.32938 -9.05919 -8.83412 -8.22911 -6.49213 -6.20978 -3.91573 1.88719 2.25128 2.60363 2.91376 3.04594 3.12183 3.23372 3.27087 3.29765 3.41014 3.72851 3.74875 3.85154 4.20876 4.23244 4.40139 4.44265 4.54800 4.63467 4.73889 4.85215 5.01706 5.13917 5.15888 5.31989 5.36671 5.38705 5.52436 5.58997 5.63599 5.66380 5.81577 5.85926 5.90141 6.13342 6.15071 6.22648 6.38934 6.63333 7.15750 7.59403 7.63086 7.72396 7.89645 8.35281 8.63451 9.23987 10.86382 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.002679 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.763639 B =10447.977487 C =11933.967134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.152 4.152 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.733 5.733 14 C 0.155 3.845 15 C 0.082 3.918 16 N -0.690 5.690 17 C 0.538 3.462 18 O -0.518 6.518 19 C -0.153 4.153 20 H 0.140 0.860 21 C -0.117 4.117 22 C 0.098 3.902 23 N -0.726 5.726 24 C 0.531 3.469 25 O -0.523 6.523 26 C -0.168 4.168 27 C -0.150 4.150 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.395 0.605 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.410 0.590 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.414 0.586 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.844 -20.925 -7.546 27.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.390 6.390 13 N -0.388 5.388 14 C 0.029 3.971 15 C -0.006 4.006 16 N -0.342 5.342 17 C 0.323 3.677 18 O -0.393 6.393 19 C -0.178 4.178 20 H 0.158 0.842 21 C -0.155 4.155 22 C -0.027 4.027 23 N -0.382 5.382 24 C 0.315 3.685 25 O -0.399 6.399 26 C -0.205 4.205 27 C -0.188 4.188 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.229 0.771 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.247 0.753 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.253 0.747 40 H 0.120 0.880 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.076 -21.594 -7.333 26.799 hybrid contribution 3.353 1.454 0.036 3.654 sum 17.429 -20.140 -7.296 27.616 Atomic orbital electron populations 1.70008 1.05951 1.27566 1.46748 1.24989 0.95020 0.99000 0.94545 0.86229 0.79238 0.81272 0.78780 1.19960 1.20812 1.19938 1.22830 0.94864 0.91714 1.59081 0.91010 1.85416 1.04843 0.96201 1.96705 1.23522 1.06579 0.95412 1.04804 1.20304 0.86524 0.86217 0.75245 1.90708 1.15312 1.85558 1.47458 1.45848 1.09847 1.05175 1.77911 1.20999 0.93353 0.79875 1.02828 1.20845 0.90295 0.92506 0.96915 1.45238 1.19074 1.64609 1.05317 1.19720 0.86678 0.78999 0.82349 1.90735 1.33166 1.41991 1.73364 1.22267 0.93616 1.03867 0.98041 0.84221 1.22665 0.96266 1.05450 0.91150 1.22210 0.91099 1.01106 0.88269 1.46111 1.24090 1.60905 1.07109 1.20332 0.85730 0.77989 0.84432 1.90778 1.70428 1.55325 1.23397 1.23491 1.02659 1.01833 0.92538 1.23197 1.02462 0.93216 0.99953 0.92120 0.89246 0.89396 0.77115 0.90332 0.90543 0.75291 0.88067 0.88029 0.90340 0.89607 0.74659 0.87971 0.87253 0.87547 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.53 10.13 7.85 -10.98 -0.09 10.05 16 12 O -0.52 -11.99 15.86 5.56 0.09 -11.90 16 13 N -0.73 -10.25 5.40 -60.29 -0.33 -10.57 16 14 C 0.15 1.99 5.90 -4.04 -0.02 1.97 16 15 C 0.08 0.84 2.02 -131.82 -0.27 0.57 16 16 N -0.69 -6.74 4.17 -47.61 -0.20 -6.94 16 17 C 0.54 5.83 7.09 -10.99 -0.08 5.75 16 18 O -0.52 -7.18 15.11 5.56 0.08 -7.10 16 19 C -0.15 -1.19 3.33 -91.65 -0.31 -1.50 16 20 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 21 C -0.12 -0.69 6.47 -24.98 -0.16 -0.85 16 22 C 0.10 0.35 7.78 -3.12 -0.02 0.33 16 23 N -0.73 -4.01 6.24 -59.20 -0.37 -4.38 16 24 C 0.53 4.52 7.84 -10.86 -0.09 4.43 16 25 O -0.52 -6.02 16.73 5.56 0.09 -5.93 16 26 C -0.17 -1.36 10.10 -26.73 -0.27 -1.63 16 27 C -0.15 -1.41 9.56 -26.74 -0.26 -1.66 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 31 H 0.40 4.47 7.75 -40.82 -0.32 4.15 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 34 H 0.41 3.53 7.84 -40.82 -0.32 3.21 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.76 7.07 -51.93 -0.37 0.39 16 37 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.09 0.18 8.14 -51.92 -0.42 -0.24 16 39 H 0.41 1.66 8.96 -40.82 -0.37 1.30 16 40 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 41 H 0.11 0.79 8.05 -51.93 -0.42 0.37 16 42 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -38.19 382.37 -8.47 -46.66 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.97 Total: 5.75 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.14 Total: 1.61 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.16 Total: -47.36 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: 0.26 Total: -24.93 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.19 -8.47 -46.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535131246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.364 kcal (2) G-P(sol) polarization free energy of solvation -38.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds