Wall clock time and date at job start Sat Apr 11 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86807 * 119.99484 * 2 1 4 4 H 1.48496 * 109.47267 * 269.99713 * 3 2 1 5 5 H 1.48500 * 109.47123 * 30.00117 * 3 2 1 6 6 H 1.48507 * 109.46850 * 149.99684 * 3 2 1 7 7 C 1.38792 * 120.00491 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00085 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00040 * 179.97438 * 7 2 1 10 10 C 1.80999 * 99.99901 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47257 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99773 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00001 * 180.27873 * 11 10 9 14 14 C 1.46504 * 119.99980 * 179.72298 * 13 11 10 15 15 C 1.52996 * 109.47183 * 185.53864 * 14 13 11 16 16 N 1.46503 * 115.54933 * 273.02015 * 15 14 13 17 17 C 1.34771 * 120.00395 * 294.98056 * 16 15 14 18 18 O 1.21278 * 120.00020 * 354.97248 * 17 16 15 19 19 C 1.50707 * 120.00016 * 174.97715 * 17 16 15 20 20 H 1.08991 * 110.43569 * 59.29828 * 19 17 16 21 21 C 1.54630 * 110.48490 * 181.83693 * 19 17 16 22 22 C 1.54482 * 101.76554 * 93.87831 * 21 19 17 23 23 N 1.46766 * 105.47264 * 25.41559 * 22 21 19 24 24 C 1.34748 * 111.35070 * 343.01604 * 23 22 21 25 25 O 1.21276 * 125.12515 * 180.37058 * 24 23 22 26 26 C 1.53001 * 117.49910 * 127.35739 * 15 14 13 27 27 C 1.52993 * 117.49916 * 58.69323 * 15 14 13 28 28 H 0.97001 * 120.00627 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47403 * 59.99855 * 10 9 7 30 30 H 1.09003 * 109.47078 * 300.00207 * 10 9 7 31 31 H 0.97003 * 120.00382 * 359.71690 * 13 11 10 32 32 H 1.09002 * 109.46994 * 305.54209 * 14 13 11 33 33 H 1.09001 * 109.47033 * 65.53836 * 14 13 11 34 34 H 0.97009 * 119.99583 * 114.97903 * 16 15 14 35 35 H 1.08998 * 110.97276 * 211.99974 * 21 19 17 36 36 H 1.09008 * 110.97025 * 335.76228 * 21 19 17 37 37 H 1.08995 * 110.24423 * 144.41436 * 22 21 19 38 38 H 1.09002 * 110.24737 * 266.33239 * 22 21 19 39 39 H 0.96999 * 124.34964 * 162.97741 * 23 22 21 40 40 H 1.08998 * 117.49368 * 359.97438 * 26 15 14 41 41 H 1.08999 * 117.49808 * 145.01769 * 26 15 14 42 42 H 1.09001 * 117.49996 * 214.97674 * 27 15 14 43 43 H 1.09000 * 117.50121 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4404 0.7001 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2018 -0.0001 10 6 4.0868 -2.9843 0.0001 11 6 5.5733 -3.2322 0.0002 12 8 6.3442 -2.2959 -0.0003 13 7 6.0460 -4.4943 -0.0052 14 6 7.4911 -4.7353 -0.0112 15 6 7.7574 -6.2349 -0.1559 16 7 7.7827 -6.9957 1.0958 17 6 8.7429 -6.7563 2.0108 18 8 9.6381 -5.9772 1.7607 19 6 8.7042 -7.4568 3.3446 20 1 8.7372 -8.5376 3.2079 21 6 9.8775 -6.9880 4.2362 22 6 9.2209 -5.8494 5.0479 23 7 7.7865 -6.1594 5.0677 24 6 7.4656 -7.0580 4.1162 25 8 6.3498 -7.4850 3.9075 26 6 8.7045 -6.6798 -1.2722 27 6 7.2002 -6.9349 -1.3970 28 1 -0.4851 0.8400 0.0004 29 1 3.6436 -3.4316 -0.8896 30 1 3.6442 -3.4311 0.8904 31 1 5.4294 -5.2431 -0.0051 32 1 7.9446 -4.2033 -0.8476 33 1 7.9229 -4.3780 0.9237 34 1 7.1083 -7.6719 1.2661 35 1 10.2139 -7.7909 4.8921 36 1 10.7012 -6.6103 3.6303 37 1 9.6172 -5.8329 6.0631 38 1 9.3940 -4.8901 4.5602 39 1 7.1505 -5.7682 5.6868 40 1 9.1373 -5.9040 -1.9038 41 1 9.3459 -7.5388 -1.0754 42 1 6.8528 -7.9616 -1.2823 43 1 6.6435 -6.3271 -2.1103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535131249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:53 Heat of formation + Delta-G solvation = -111.078655 kcal Electronic energy + Delta-G solvation = -27215.977893 eV Core-core repulsion = 23193.859673 eV Total energy + Delta-G solvation = -4022.118220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.10526 -40.96205 -40.12522 -38.59972 -37.31861 -35.31332 -34.69070 -34.07732 -32.36314 -31.39773 -28.93030 -27.99967 -27.50062 -24.33290 -23.55013 -22.59657 -21.79430 -21.42213 -20.80512 -19.90609 -18.78895 -18.54732 -18.11230 -17.69089 -17.22249 -17.07759 -16.63979 -16.53854 -16.28020 -15.76822 -15.65522 -15.38623 -14.95635 -14.90223 -14.75184 -14.63750 -14.48692 -14.33396 -13.77790 -13.54456 -13.43920 -13.35944 -13.02471 -12.70105 -12.49301 -12.45378 -12.31629 -12.01134 -11.88325 -11.60965 -11.24178 -11.18976 -11.08559 -10.89591 -10.57064 -10.26742 -10.17279 -10.15673 -9.02686 -8.53391 -6.24764 0.94853 1.08250 1.29798 1.44145 1.48721 1.51505 1.52556 1.95269 2.06121 2.23509 2.34771 2.64872 2.79815 2.84724 3.18955 3.34437 3.40462 3.62201 3.70472 3.79562 3.93249 3.98936 4.17044 4.18677 4.39048 4.41770 4.47453 4.53649 4.68055 4.71447 4.72011 4.95276 4.99303 5.09079 5.15458 5.26454 5.41335 5.66995 5.68999 5.87312 6.09570 6.33148 6.37583 6.91598 7.02610 7.07602 7.10312 8.59152 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.002662 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.448562 B =10516.617721 C =11461.439704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.238 1.238 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.174 6.174 10 C -0.110 4.110 11 C 0.534 3.466 12 O -0.563 6.563 13 N -0.707 5.707 14 C 0.161 3.839 15 C 0.063 3.937 16 N -0.685 5.685 17 C 0.530 3.470 18 O -0.548 6.548 19 C -0.146 4.146 20 H 0.161 0.839 21 C -0.112 4.112 22 C 0.093 3.907 23 N -0.724 5.724 24 C 0.522 3.478 25 O -0.560 6.560 26 C -0.150 4.150 27 C -0.141 4.141 28 H 0.278 0.722 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.415 0.585 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.417 0.583 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.418 0.582 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.995 -22.838 6.354 33.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.182 1.182 6 H -0.162 1.162 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.052 5.948 10 C -0.261 4.261 11 C 0.320 3.680 12 O -0.441 6.441 13 N -0.361 5.361 14 C 0.036 3.964 15 C -0.024 4.024 16 N -0.336 5.336 17 C 0.315 3.685 18 O -0.425 6.425 19 C -0.170 4.170 20 H 0.178 0.822 21 C -0.150 4.150 22 C -0.031 4.031 23 N -0.378 5.378 24 C 0.307 3.693 25 O -0.438 6.438 26 C -0.189 4.189 27 C -0.179 4.179 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.127 0.873 31 H 0.252 0.748 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.254 0.746 35 H 0.140 0.860 36 H 0.122 0.878 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.257 0.743 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.146 0.854 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 24.250 -20.903 6.021 32.577 hybrid contribution -2.153 -0.528 0.452 2.263 sum 22.097 -21.431 6.474 31.456 Atomic orbital electron populations 1.70013 1.07287 1.29075 1.49108 1.25561 0.95279 1.02253 0.92853 0.85869 0.80609 0.79597 0.80308 1.18524 1.18210 1.16243 1.22449 0.90146 0.96733 1.58327 0.91957 1.84712 1.06540 1.05911 1.97588 1.23255 0.95545 0.99841 1.07451 1.20012 0.89544 0.83213 0.75232 1.90694 1.59379 1.43796 1.50231 1.45738 1.08171 1.06876 1.75297 1.20849 0.80286 0.93450 1.01801 1.20644 1.10449 0.89533 0.81822 1.45305 1.30904 1.40423 1.17010 1.20211 0.81286 0.81646 0.85338 1.90726 1.35812 1.36461 1.79452 1.22221 0.96703 1.05331 0.92738 0.82204 1.22686 0.96041 0.98926 0.97332 1.22345 0.78503 0.98815 1.03400 1.46389 1.12160 1.43590 1.35678 1.20742 0.89011 0.78861 0.80727 1.90776 1.25151 1.58169 1.69750 1.23429 0.93570 1.03747 0.98110 1.23499 0.96636 1.02707 0.95049 0.91303 0.86402 0.87288 0.74822 0.90656 0.93568 0.74565 0.85977 0.87796 0.86586 0.91906 0.74254 0.87704 0.87107 0.85416 0.86820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.43 13.97 21.65 0.30 -56.12 16 2 C 0.05 2.73 5.50 84.86 0.47 3.20 16 3 Si 0.91 45.60 27.74 68.60 1.90 47.50 16 4 H -0.26 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.24 -11.94 6.74 99.48 0.67 -11.27 16 7 C -0.53 -31.28 10.04 67.95 0.68 -30.60 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 9 S -0.17 -9.01 18.55 -56.49 -1.05 -10.05 16 10 C -0.11 -4.30 6.16 71.24 0.44 -3.86 16 11 C 0.53 19.44 7.85 87.66 0.69 20.13 16 12 O -0.56 -25.34 15.85 -3.03 -0.05 -25.39 16 13 N -0.71 -18.38 5.43 -463.06 -2.51 -20.90 16 14 C 0.16 4.01 5.66 86.38 0.49 4.50 16 15 C 0.06 1.06 1.74 3.60 0.01 1.07 16 16 N -0.68 -10.69 5.41 -422.94 -2.29 -12.97 16 17 C 0.53 9.49 6.85 87.66 0.60 10.09 16 18 O -0.55 -13.18 14.66 -3.02 -0.04 -13.23 16 19 C -0.15 -1.78 3.32 -11.54 -0.04 -1.82 16 20 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 21 C -0.11 -0.90 6.51 31.65 0.21 -0.69 16 22 C 0.09 0.90 7.78 86.83 0.68 1.58 16 23 N -0.72 -10.40 6.25 -459.36 -2.87 -13.27 16 24 C 0.52 9.47 7.72 87.85 0.68 10.15 16 25 O -0.56 -14.23 18.03 -3.02 -0.05 -14.29 16 26 C -0.15 -1.99 10.11 30.62 0.31 -1.69 16 27 C -0.14 -1.53 9.90 30.62 0.30 -1.22 16 28 H 0.28 15.76 8.31 -92.71 -0.77 14.98 16 29 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 30 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 31 H 0.41 8.30 8.34 -92.71 -0.77 7.53 16 32 H 0.08 2.00 7.88 -2.39 -0.02 1.98 16 33 H 0.05 1.44 7.14 -2.39 -0.02 1.42 16 34 H 0.42 5.23 8.83 -92.70 -0.82 4.42 16 35 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.10 1.07 6.94 -2.38 -0.02 1.05 16 37 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.42 5.47 8.96 -92.71 -0.83 4.64 16 40 H 0.10 1.45 8.04 -2.39 -0.02 1.43 16 41 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -84.60 381.74 -2.54 -87.14 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -1.38 Total: 20.74 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 5.51 Total: 10.83 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -7.37 Total: -103.26 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -0.15 Total: -52.90 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.90 Total: 47.50 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.05 kcal Total: -84.60 -2.54 -87.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535131249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.939 kcal (2) G-P(sol) polarization free energy of solvation -84.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds