Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70937 * 125.59129 * 2 1 4 4 C 1.70769 * 91.13916 * 180.02562 * 3 2 1 5 5 C 1.50699 * 124.71053 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46700 * 269.71792 * 5 4 3 7 7 C 1.34784 * 119.99893 * 180.02562 * 6 5 4 8 8 O 1.21507 * 119.99927 * 0.02562 * 7 6 5 9 9 O 1.34634 * 119.99829 * 179.72952 * 7 6 5 10 10 C 1.45201 * 116.99818 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46978 * 59.99497 * 10 9 7 12 12 C 1.52998 * 109.47141 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.47167 * 299.99716 * 10 9 7 14 14 N 1.28644 * 110.57328 * 359.70121 * 4 3 2 15 15 C 1.33576 * 115.77360 * 0.22797 * 14 4 3 16 16 C 1.47174 * 123.15271 * 180.02562 * 15 14 4 17 17 O 1.21666 * 119.99898 * 179.97438 * 16 15 14 18 18 N 1.34778 * 120.00258 * 359.97438 * 16 15 14 19 19 C 1.36954 * 120.00175 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99743 * 0.02562 * 19 18 16 21 21 C 1.38978 * 119.99928 * 179.97438 * 19 18 16 22 22 N 1.31406 * 119.99859 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99682 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47423 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47421 * 120.00610 * 23 21 19 26 26 H 1.48505 * 109.47045 * 240.00246 * 23 21 19 27 27 H 1.09006 * 109.46842 * 270.25762 * 1 2 3 28 28 H 1.08996 * 109.47189 * 30.26013 * 1 2 3 29 29 H 1.08998 * 109.47151 * 150.26558 * 1 2 3 30 30 H 1.08998 * 109.46743 * 149.72268 * 5 4 3 31 31 H 1.08994 * 109.47542 * 29.72127 * 5 4 3 32 32 H 0.97005 * 120.00261 * 0.02562 * 6 5 4 33 33 H 1.09001 * 109.46839 * 60.00396 * 11 10 9 34 34 H 1.09003 * 109.46834 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47606 * 299.99735 * 11 10 9 36 36 H 1.09001 * 109.46982 * 59.99892 * 12 10 9 37 37 H 1.09004 * 109.46956 * 180.02562 * 12 10 9 38 38 H 1.09001 * 109.47443 * 300.00074 * 12 10 9 39 39 H 1.09002 * 109.47011 * 59.99915 * 13 10 9 40 40 H 1.08994 * 109.47249 * 179.97438 * 13 10 9 41 41 H 1.09001 * 109.47037 * 300.00158 * 13 10 9 42 42 H 0.97000 * 119.99755 * 0.02562 * 18 16 15 43 43 H 0.97004 * 119.99664 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5019 1.3900 0.0000 4 6 3.9100 0.4240 -0.0008 5 6 5.3184 0.9600 -0.0017 6 7 5.7763 1.1272 -1.3832 7 6 7.0152 1.5969 -1.6304 8 8 7.7525 1.8813 -0.7074 9 8 7.4380 1.7454 -2.9000 10 6 8.7838 2.2558 -3.0912 11 6 9.7873 1.3075 -2.4319 12 6 9.0839 2.3547 -4.5882 13 6 8.8985 3.6425 -2.4549 14 7 3.6015 -0.8249 0.0053 15 6 2.2944 -1.1002 0.0060 16 6 1.7608 -2.4718 0.0131 17 8 0.5583 -2.6567 0.0138 18 7 2.6042 -3.5231 0.0188 19 6 2.1076 -4.7994 0.0259 20 1 1.0402 -4.9635 0.0266 21 6 2.9774 -5.8834 0.0313 22 7 4.2762 -5.6836 0.0300 23 14 2.3001 -7.6242 0.0403 24 1 0.8158 -7.5779 0.0398 25 1 2.7728 -8.3456 -1.1685 26 1 2.7732 -8.3331 1.2565 27 1 -0.3633 0.0046 1.0277 28 1 -0.3633 0.8876 -0.5178 29 1 -0.3633 -0.8923 -0.5097 30 1 5.9740 0.2599 0.5161 31 1 5.3409 1.9234 0.5076 32 1 5.1879 0.8998 -2.1201 33 1 9.7056 0.3197 -2.8852 34 1 10.7976 1.6905 -2.5758 35 1 9.5737 1.2367 -1.3653 36 1 8.3689 3.0300 -5.0582 37 1 10.0944 2.7374 -4.7317 38 1 9.0022 1.3666 -5.0412 39 1 8.6849 3.5716 -1.3884 40 1 9.9089 4.0254 -2.5980 41 1 8.1836 4.3180 -2.9246 42 1 3.5629 -3.3756 0.0186 43 1 4.8832 -6.4402 0.0342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546236581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -82.667982 kcal Electronic energy + Delta-G solvation = -26905.403008 eV Core-core repulsion = 22884.516767 eV Total energy + Delta-G solvation = -4020.886240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.88869 -39.93021 -37.85275 -37.30962 -35.11407 -34.26184 -34.05072 -32.17933 -31.33278 -28.98806 -27.63418 -27.56568 -26.35851 -24.93548 -23.52202 -22.42358 -20.86743 -20.17147 -18.82125 -18.44163 -17.97593 -17.85699 -16.82368 -16.31552 -15.63474 -15.56404 -15.01431 -14.73305 -14.67570 -14.62225 -13.98422 -13.83379 -13.64572 -13.47649 -13.04547 -12.89818 -12.71580 -12.57763 -12.47709 -12.29650 -12.15229 -12.10730 -12.08118 -11.62629 -11.60804 -11.51173 -11.30594 -11.18580 -10.53919 -10.41596 -10.34565 -10.21786 -9.65786 -9.61160 -9.36597 -9.17455 -8.56966 -8.48641 -8.08326 -6.56967 -3.90834 0.69075 1.38365 1.84473 1.99272 2.59894 2.73323 3.15227 3.20453 3.27634 3.97577 4.04495 4.09384 4.27928 4.49984 4.54724 4.68831 4.87774 5.04084 5.23936 5.24070 5.25832 5.32064 5.34549 5.40024 5.46380 5.53125 5.59189 5.65554 5.70664 5.76243 5.90169 5.95102 6.08796 6.13251 6.21471 6.37479 6.42692 6.69825 7.25914 7.40558 7.72434 7.95517 8.24324 8.50052 9.02105 9.42844 9.95732 10.58784 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.002867 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.566963 B = 9763.215488 C =11887.084041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.195 4.195 3 S 0.177 5.823 4 C -0.020 4.020 5 C 0.226 3.774 6 N -0.705 5.705 7 C 0.655 3.345 8 O -0.568 6.568 9 O -0.363 6.363 10 C 0.136 3.864 11 C -0.185 4.185 12 C -0.141 4.141 13 C -0.183 4.183 14 N -0.411 5.411 15 C 0.034 3.966 16 C 0.491 3.509 17 O -0.593 6.593 18 N -0.523 5.523 19 C -0.297 4.297 20 H 0.110 0.890 21 C 0.025 3.975 22 N -0.879 5.879 23 Si 0.935 3.065 24 H -0.265 1.265 25 H -0.279 1.279 26 H -0.279 1.279 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.409 0.591 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.403 0.597 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.398 18.787 -5.378 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.320 4.320 3 S 0.432 5.568 4 C -0.299 4.299 5 C 0.100 3.900 6 N -0.365 5.365 7 C 0.409 3.591 8 O -0.457 6.457 9 O -0.278 6.278 10 C 0.099 3.901 11 C -0.242 4.242 12 C -0.198 4.198 13 C -0.240 4.240 14 N -0.128 5.128 15 C -0.100 4.100 16 C 0.276 3.724 17 O -0.480 6.480 18 N -0.156 5.156 19 C -0.427 4.427 20 H 0.127 0.873 21 C -0.179 4.179 22 N -0.518 5.518 23 Si 0.761 3.239 24 H -0.189 1.189 25 H -0.205 1.205 26 H -0.205 1.205 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.245 0.755 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.238 0.762 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.512 19.295 -4.948 21.289 hybrid contribution -0.059 -1.828 -0.276 1.850 sum 7.453 17.467 -5.224 19.696 Atomic orbital electron populations 1.20459 0.85901 1.04124 1.03285 1.25437 1.03222 0.95181 1.08144 1.82473 0.96996 1.10161 1.67131 1.26513 1.00147 0.92516 1.10718 1.19565 0.87273 1.01493 0.81634 1.44679 1.13670 1.68815 1.09326 1.17927 0.82330 0.77006 0.81882 1.90903 1.54628 1.55496 1.44709 1.86315 1.34888 1.79279 1.27311 1.22078 0.77659 0.93814 0.96505 1.22532 0.98513 0.99166 1.04010 1.21865 1.02220 1.03385 0.92366 1.22515 1.02566 0.94971 1.03962 1.66987 1.17521 1.17229 1.11035 1.20871 0.86204 0.97209 1.05671 1.16510 0.86415 0.81872 0.87612 1.90567 1.14109 1.84143 1.59203 1.41871 1.09536 1.04919 1.59236 1.19922 0.94865 0.80937 1.46999 0.87254 1.25447 0.95013 1.00904 0.96571 1.69665 1.01835 1.33022 1.47294 0.85715 0.79410 0.80811 0.77939 1.18909 1.20466 1.20454 0.90652 0.92289 0.87066 0.87980 0.88968 0.75537 0.91981 0.91204 0.89223 0.91492 0.90165 0.91351 0.89323 0.91181 0.92200 0.76172 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 9.65 36.01 0.35 -0.87 16 2 C -0.20 -3.32 6.40 -35.36 -0.23 -3.55 16 3 S 0.18 2.24 22.89 -107.50 -2.46 -0.22 16 4 C -0.02 -0.29 6.71 -13.61 -0.09 -0.38 16 5 C 0.23 2.80 6.24 -5.19 -0.03 2.77 16 6 N -0.70 -8.60 5.55 -66.47 -0.37 -8.97 16 7 C 0.66 8.63 8.06 54.06 0.44 9.07 16 8 O -0.57 -8.33 11.88 -19.28 -0.23 -8.56 16 9 O -0.36 -4.41 9.94 -40.31 -0.40 -4.81 16 10 C 0.14 1.35 1.13 -90.62 -0.10 1.25 16 11 C -0.19 -1.87 8.37 37.16 0.31 -1.56 16 12 C -0.14 -1.04 8.85 37.16 0.33 -0.71 16 13 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 14 N -0.41 -7.78 10.12 -8.51 -0.09 -7.87 16 15 C 0.03 0.71 6.70 -84.53 -0.57 0.15 16 16 C 0.49 12.32 7.74 -12.63 -0.10 12.22 16 17 O -0.59 -15.84 13.68 5.22 0.07 -15.77 16 18 N -0.52 -13.97 5.28 -12.02 -0.06 -14.04 16 19 C -0.30 -8.28 9.68 -14.99 -0.15 -8.42 16 20 H 0.11 3.12 7.15 -52.49 -0.38 2.75 16 21 C 0.03 0.67 5.50 -17.46 -0.10 0.58 16 22 N -0.88 -24.01 13.05 55.50 0.72 -23.28 16 23 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.11 2.04 6.00 -51.93 -0.31 1.73 16 30 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.41 4.69 8.57 -40.82 -0.35 4.34 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.11 5.87 -51.93 -0.30 0.81 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.99 5.89 -51.93 -0.31 0.69 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.40 10.77 7.41 -40.82 -0.30 10.47 16 43 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -31.64 375.44 -7.54 -39.18 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -5.74 Total: 13.92 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 0.38 Total: 9.19 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.21 Total: -54.16 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.56 Total: -29.14 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.46 Total: -0.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.64 -7.54 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.485 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds