Wall clock time and date at job start Sat Apr 11 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70937 * 125.59129 * 2 1 4 4 C 1.70769 * 91.13916 * 180.02562 * 3 2 1 5 5 C 1.50699 * 124.71053 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46700 * 269.71792 * 5 4 3 7 7 C 1.34784 * 119.99893 * 180.02562 * 6 5 4 8 8 O 1.21507 * 119.99927 * 0.02562 * 7 6 5 9 9 O 1.34634 * 119.99829 * 179.72952 * 7 6 5 10 10 C 1.45201 * 116.99818 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46978 * 59.99497 * 10 9 7 12 12 C 1.52998 * 109.47141 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.47167 * 299.99716 * 10 9 7 14 14 N 1.28644 * 110.57328 * 359.70121 * 4 3 2 15 15 C 1.33576 * 115.77360 * 0.22797 * 14 4 3 16 16 C 1.47174 * 123.15271 * 180.02562 * 15 14 4 17 17 O 1.21666 * 119.99898 * 179.97438 * 16 15 14 18 18 N 1.34778 * 120.00258 * 359.97438 * 16 15 14 19 19 C 1.36954 * 120.00175 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99743 * 0.02562 * 19 18 16 21 21 C 1.38978 * 119.99928 * 179.97438 * 19 18 16 22 22 N 1.31406 * 119.99859 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99682 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47423 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47421 * 120.00610 * 23 21 19 26 26 H 1.48505 * 109.47045 * 240.00246 * 23 21 19 27 27 H 1.09006 * 109.46842 * 270.25762 * 1 2 3 28 28 H 1.08996 * 109.47189 * 30.26013 * 1 2 3 29 29 H 1.08998 * 109.47151 * 150.26558 * 1 2 3 30 30 H 1.08998 * 109.46743 * 149.72268 * 5 4 3 31 31 H 1.08994 * 109.47542 * 29.72127 * 5 4 3 32 32 H 0.97005 * 120.00261 * 0.02562 * 6 5 4 33 33 H 1.09001 * 109.46839 * 60.00396 * 11 10 9 34 34 H 1.09003 * 109.46834 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47606 * 299.99735 * 11 10 9 36 36 H 1.09001 * 109.46982 * 59.99892 * 12 10 9 37 37 H 1.09004 * 109.46956 * 180.02562 * 12 10 9 38 38 H 1.09001 * 109.47443 * 300.00074 * 12 10 9 39 39 H 1.09002 * 109.47011 * 59.99915 * 13 10 9 40 40 H 1.08994 * 109.47249 * 179.97438 * 13 10 9 41 41 H 1.09001 * 109.47037 * 300.00158 * 13 10 9 42 42 H 0.97000 * 119.99755 * 0.02562 * 18 16 15 43 43 H 0.97004 * 119.99664 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5019 1.3900 0.0000 4 6 3.9100 0.4240 -0.0008 5 6 5.3184 0.9600 -0.0017 6 7 5.7763 1.1272 -1.3832 7 6 7.0152 1.5969 -1.6304 8 8 7.7525 1.8813 -0.7074 9 8 7.4380 1.7454 -2.9000 10 6 8.7838 2.2558 -3.0912 11 6 9.7873 1.3075 -2.4319 12 6 9.0839 2.3547 -4.5882 13 6 8.8985 3.6425 -2.4549 14 7 3.6015 -0.8249 0.0053 15 6 2.2944 -1.1002 0.0060 16 6 1.7608 -2.4718 0.0131 17 8 0.5583 -2.6567 0.0138 18 7 2.6042 -3.5231 0.0188 19 6 2.1076 -4.7994 0.0259 20 1 1.0402 -4.9635 0.0266 21 6 2.9774 -5.8834 0.0313 22 7 4.2762 -5.6836 0.0300 23 14 2.3001 -7.6242 0.0403 24 1 0.8158 -7.5779 0.0398 25 1 2.7728 -8.3456 -1.1685 26 1 2.7732 -8.3331 1.2565 27 1 -0.3633 0.0046 1.0277 28 1 -0.3633 0.8876 -0.5178 29 1 -0.3633 -0.8923 -0.5097 30 1 5.9740 0.2599 0.5161 31 1 5.3409 1.9234 0.5076 32 1 5.1879 0.8998 -2.1201 33 1 9.7056 0.3197 -2.8852 34 1 10.7976 1.6905 -2.5758 35 1 9.5737 1.2367 -1.3653 36 1 8.3689 3.0300 -5.0582 37 1 10.0944 2.7374 -4.7317 38 1 9.0022 1.3666 -5.0412 39 1 8.6849 3.5716 -1.3884 40 1 9.9089 4.0254 -2.5980 41 1 8.1836 4.3180 -2.9246 42 1 3.5629 -3.3756 0.0186 43 1 4.8832 -6.4402 0.0342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:55 Heat of formation + Delta-G solvation = -106.468605 kcal Electronic energy + Delta-G solvation = -26906.435080 eV Core-core repulsion = 22884.516767 eV Total energy + Delta-G solvation = -4021.918313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85859 -41.39718 -39.45039 -38.46490 -36.31786 -36.03756 -34.96133 -33.61765 -33.21811 -30.20929 -28.32112 -28.26513 -27.97423 -26.53791 -24.92733 -23.48778 -22.26334 -21.15629 -20.48662 -19.79044 -19.57420 -19.18450 -17.75700 -17.28485 -17.20267 -16.82509 -16.65907 -16.13883 -15.86643 -15.71145 -15.48455 -15.06662 -14.79645 -14.72560 -14.44298 -14.32112 -13.84478 -13.70442 -13.63796 -13.36468 -13.30689 -13.04941 -12.97723 -12.87753 -12.83480 -12.65451 -12.46413 -12.43973 -12.31615 -12.11497 -11.60577 -11.37073 -11.16365 -10.89563 -10.49344 -10.35821 -10.32043 -10.15246 -9.85405 -8.56253 -6.03055 -0.57503 0.18431 0.54550 0.78910 1.29725 1.39053 1.46878 1.55201 1.72393 2.24807 2.42525 2.77224 3.14952 3.23733 3.25282 3.76205 3.78547 3.83440 3.96290 3.98135 4.15325 4.26100 4.45111 4.59824 4.66047 4.69723 4.76669 4.80665 4.82766 4.85132 4.88443 4.91484 4.98913 5.19579 5.28298 5.32580 5.37063 5.37644 5.53907 5.88354 6.26537 6.37103 6.57330 6.99008 7.25789 7.43404 7.96249 8.60945 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.002867 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.566963 B = 9763.215488 C =11887.084041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.202 4.202 3 S 0.318 5.682 4 C -0.027 4.027 5 C 0.229 3.771 6 N -0.701 5.701 7 C 0.654 3.346 8 O -0.585 6.585 9 O -0.370 6.370 10 C 0.123 3.877 11 C -0.183 4.183 12 C -0.137 4.137 13 C -0.177 4.177 14 N -0.450 5.450 15 C -0.007 4.007 16 C 0.493 3.507 17 O -0.617 6.617 18 N -0.543 5.543 19 C -0.336 4.336 20 H 0.091 0.909 21 C -0.013 4.013 22 N -0.912 5.912 23 Si 1.004 2.996 24 H -0.266 1.266 25 H -0.268 1.268 26 H -0.269 1.269 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.413 0.587 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.399 0.601 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 21.654 -6.055 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.327 4.327 3 S 0.575 5.425 4 C -0.306 4.306 5 C 0.103 3.897 6 N -0.362 5.362 7 C 0.407 3.593 8 O -0.476 6.476 9 O -0.284 6.284 10 C 0.087 3.913 11 C -0.240 4.240 12 C -0.194 4.194 13 C -0.235 4.235 14 N -0.167 5.167 15 C -0.141 4.141 16 C 0.280 3.720 17 O -0.505 6.505 18 N -0.177 5.177 19 C -0.466 4.466 20 H 0.108 0.892 21 C -0.214 4.214 22 N -0.551 5.551 23 Si 0.826 3.174 24 H -0.191 1.191 25 H -0.193 1.193 26 H -0.194 1.194 27 H 0.102 0.898 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.139 0.861 32 H 0.249 0.751 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.233 0.767 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.865 22.197 -5.637 24.215 hybrid contribution -0.182 -2.367 -0.080 2.375 sum 7.683 19.831 -5.717 22.022 Atomic orbital electron populations 1.20500 0.84963 1.04538 1.03941 1.25947 1.04673 0.96994 1.05050 1.81975 0.92464 1.04847 1.63245 1.26894 1.02323 0.92154 1.09193 1.19634 0.85774 1.02342 0.81926 1.44619 1.13631 1.68588 1.09363 1.18019 0.82288 0.76864 0.82106 1.90902 1.55090 1.56274 1.45321 1.86329 1.36217 1.79311 1.26556 1.22461 0.76489 0.94021 0.98284 1.22504 1.00063 0.99238 1.02195 1.21896 1.03785 1.03491 0.90206 1.22460 1.04093 0.94611 1.02294 1.66900 1.16979 1.19756 1.13035 1.20287 0.87812 0.95684 1.10338 1.17261 0.86109 0.83577 0.85091 1.90530 1.15177 1.85456 1.59378 1.41906 1.09350 1.05149 1.61252 1.19914 0.94338 0.82376 1.49981 0.89155 1.26315 0.95161 1.04496 0.95476 1.69744 1.02797 1.34308 1.48289 0.84725 0.78498 0.75693 0.78503 1.19056 1.19327 1.19357 0.89784 0.88057 0.90512 0.89429 0.86082 0.75081 0.92659 0.88837 0.91810 0.90908 0.87765 0.91783 0.91645 0.89025 0.91551 0.76661 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.34 9.65 71.24 0.69 -1.66 16 2 C -0.20 -6.50 6.40 25.01 0.16 -6.34 16 3 S 0.32 6.78 22.89 -56.49 -1.29 5.49 16 4 C -0.03 -0.75 6.71 88.58 0.59 -0.16 16 5 C 0.23 5.31 6.24 85.63 0.53 5.85 16 6 N -0.70 -16.26 5.55 -594.62 -3.30 -19.57 16 7 C 0.65 16.69 8.06 129.79 1.05 17.74 16 8 O -0.59 -16.91 11.88 19.82 0.24 -16.68 16 9 O -0.37 -8.61 9.94 -55.43 -0.55 -9.16 16 10 C 0.12 2.26 1.13 -10.79 -0.01 2.25 16 11 C -0.18 -3.54 8.37 71.98 0.60 -2.94 16 12 C -0.14 -1.69 8.85 71.98 0.64 -1.06 16 13 C -0.18 -2.89 8.37 71.98 0.60 -2.29 16 14 N -0.45 -17.14 10.12 -180.85 -1.83 -18.97 16 15 C -0.01 -0.30 6.70 40.55 0.27 -0.03 16 16 C 0.49 25.98 7.74 86.59 0.67 26.65 16 17 O -0.62 -34.58 13.68 -4.24 -0.06 -34.64 16 18 N -0.54 -30.79 5.28 -310.18 -1.64 -32.43 16 19 C -0.34 -19.84 9.68 84.07 0.81 -19.02 16 20 H 0.09 5.51 7.15 -2.91 -0.02 5.49 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.91 -51.60 13.05 21.67 0.28 -51.32 16 23 Si 1.00 43.39 29.55 68.60 2.03 45.41 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.08 2.84 6.00 -2.39 -0.01 2.82 16 30 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.41 8.91 8.57 -92.70 -0.79 8.12 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.59 5.87 -2.39 -0.01 1.57 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 1.40 5.89 -2.39 -0.01 1.39 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.40 22.72 7.41 -92.71 -0.69 22.03 16 43 H 0.28 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -74.21 375.44 0.54 -73.66 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: -0.41 Total: 39.47 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 7.08 Total: 18.72 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -6.49 Total: -122.28 kcal Atomic # 8 Polarization: -60.10 SS G_CDS: -0.37 Total: -60.48 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 6.78 SS G_CDS: -1.29 Total: 5.49 kcal Total: -74.21 0.54 -73.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.804 kcal (2) G-P(sol) polarization free energy of solvation -74.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds