Wall clock time and date at job start Sat Apr 11 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35317 * 128.03773 * 2 1 4 4 O 1.34021 * 106.66589 * 180.22739 * 3 2 1 5 5 N 1.20912 * 111.84844 * 359.76677 * 4 3 2 6 6 C 1.30985 * 111.43392 * 359.97438 * 5 4 3 7 7 C 1.48331 * 126.93444 * 179.97438 * 6 5 4 8 8 O 1.21500 * 119.99892 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00213 * 0.02562 * 7 6 5 10 10 C 1.46504 * 120.00174 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46697 * 34.99787 * 10 9 7 12 12 C 1.53005 * 109.46829 * 274.99898 * 10 9 7 13 13 C 1.52999 * 109.46795 * 155.00104 * 10 9 7 14 14 H 1.08996 * 109.46929 * 294.99191 * 13 10 9 15 15 C 1.52997 * 109.47317 * 55.00087 * 13 10 9 16 16 N 1.46506 * 109.46684 * 175.00143 * 13 10 9 17 17 C 1.34775 * 119.99693 * 155.00124 * 16 13 10 18 18 O 1.21274 * 120.00425 * 359.97438 * 17 16 13 19 19 C 1.50706 * 119.99541 * 179.97438 * 17 16 13 20 20 S 1.80998 * 109.46775 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99774 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00146 * 0.02562 * 21 20 19 23 23 C 1.38800 * 119.99753 * 179.97438 * 21 20 19 24 24 N 1.31636 * 119.99994 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00104 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47386 * 89.99859 * 25 23 21 27 27 H 1.48509 * 109.46931 * 209.99633 * 25 23 21 28 28 H 1.48492 * 109.46988 * 329.99419 * 25 23 21 29 29 H 1.08995 * 109.46998 * 270.14856 * 1 2 3 30 30 H 1.08998 * 109.46807 * 30.14536 * 1 2 3 31 31 H 1.09004 * 109.47301 * 150.14594 * 1 2 3 32 32 H 1.07992 * 126.66891 * 359.97438 * 3 2 1 33 33 H 0.97000 * 119.99717 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47123 * 299.99923 * 12 10 9 35 35 H 1.09001 * 109.46897 * 60.00279 * 12 10 9 36 36 H 1.08997 * 109.46584 * 179.97438 * 12 10 9 37 37 H 1.09002 * 109.47153 * 299.99641 * 15 13 10 38 38 H 1.09001 * 109.46832 * 179.97438 * 15 13 10 39 39 H 1.09004 * 109.47261 * 59.99813 * 15 13 10 40 40 H 0.97000 * 120.00117 * 334.99772 * 16 13 10 41 41 H 1.09002 * 109.46644 * 299.99282 * 19 17 16 42 42 H 1.08999 * 109.46969 * 59.99809 * 19 17 16 43 43 H 0.97001 * 120.00176 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5774 -0.0051 5 7 3.5989 -0.6317 -0.0035 6 6 2.3837 -1.1205 0.0033 7 6 1.9992 -2.5531 0.0066 8 8 0.8255 -2.8671 0.0126 9 7 2.9518 -3.5066 0.0031 10 6 2.5721 -4.9215 0.0069 11 1 1.6618 -5.0549 -0.5776 12 6 2.3258 -5.3795 1.4459 13 6 3.6994 -5.7537 -0.6073 14 1 3.8151 -5.4892 -1.6583 15 6 5.0060 -5.4707 0.1368 16 7 3.3721 -7.1774 -0.4953 17 6 3.9061 -8.0616 -1.3610 18 8 4.6570 -7.6789 -2.2330 19 6 3.5698 -9.5261 -1.2455 20 16 4.4350 -10.4478 -2.5409 21 6 3.8780 -12.0798 -2.1792 22 1 3.2009 -12.2491 -1.3551 23 6 4.3086 -13.1478 -2.9542 24 7 3.8929 -14.3671 -2.6837 25 14 5.4793 -12.8549 -4.3801 26 1 6.8805 -12.9600 -3.8999 27 1 5.2397 -13.8730 -5.4344 28 1 5.2481 -11.4990 -4.9397 29 1 -0.3633 0.0027 1.0276 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3634 -0.8913 -0.5116 32 1 2.0560 2.1074 -0.0004 33 1 3.8889 -3.2559 -0.0021 34 1 3.2360 -5.2460 2.0305 35 1 1.5227 -4.7865 1.8835 36 1 2.0428 -6.4321 1.4487 37 1 5.2495 -4.4115 0.0535 38 1 5.8090 -6.0640 -0.3006 39 1 4.8902 -5.7353 1.1879 40 1 2.7712 -7.4835 0.2019 41 1 3.8808 -9.8942 -0.2677 42 1 2.4944 -9.6621 -1.3598 43 1 4.1942 -15.1135 -3.2251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571754792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:29 Heat of formation + Delta-G solvation = -13.430452 kcal Electronic energy + Delta-G solvation = -26452.997245 eV Core-core repulsion = 22435.113369 eV Total energy + Delta-G solvation = -4017.883876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.59655 -40.53433 -39.43207 -37.18411 -35.17027 -34.33864 -32.91642 -32.44788 -31.35338 -29.88904 -28.69176 -28.60378 -25.78209 -25.62793 -24.48406 -22.18796 -21.64674 -20.68551 -20.07912 -19.03883 -18.28053 -17.94344 -17.12014 -16.73859 -16.30444 -15.93698 -15.32904 -15.15359 -15.01026 -14.93851 -14.67967 -14.25316 -13.86787 -13.78018 -13.70689 -13.49534 -13.30810 -12.94053 -12.86819 -12.79563 -12.55210 -12.16252 -12.06255 -11.88790 -11.36301 -11.27642 -11.19042 -11.01820 -10.81302 -10.67736 -10.60251 -9.96450 -9.87406 -9.64282 -9.56391 -9.12796 -9.00695 -8.52020 -6.93384 -6.29875 -4.01884 0.62452 1.15228 2.29566 2.60752 2.68916 2.78631 2.91264 3.28185 3.32762 3.44703 3.49647 3.63868 4.03361 4.22914 4.32108 4.34507 4.53056 4.55612 4.70440 4.78080 4.87671 5.05365 5.09066 5.10522 5.12843 5.17333 5.20783 5.32518 5.34793 5.43269 5.54377 5.69239 5.73715 5.76133 5.83305 5.94299 5.98848 6.09290 6.45189 6.87899 7.45438 7.51525 7.63299 7.93119 8.40655 8.42042 9.16194 10.79290 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028832 B = 0.001855 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.914094 B =15092.944785 C =15385.481911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.150 4.150 3 C -0.065 4.065 4 O 0.126 5.874 5 N -0.330 5.330 6 C -0.030 4.030 7 C 0.602 3.398 8 O -0.516 6.516 9 N -0.707 5.707 10 C 0.136 3.864 11 H 0.100 0.900 12 C -0.169 4.169 13 C 0.138 3.862 14 H 0.095 0.905 15 C -0.169 4.169 16 N -0.730 5.730 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.125 4.125 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.225 0.775 33 H 0.408 0.592 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.400 0.600 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 32.402 10.154 34.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.155 4.155 3 C -0.146 4.146 4 O 0.050 5.950 5 N -0.030 5.030 6 C -0.189 4.189 7 C 0.386 3.614 8 O -0.389 6.389 9 N -0.361 5.361 10 C 0.031 3.969 11 H 0.118 0.882 12 C -0.227 4.227 13 C 0.032 3.968 14 H 0.113 0.887 15 C -0.228 4.228 16 N -0.386 5.386 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.275 4.275 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.241 0.759 33 H 0.245 0.755 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.236 0.764 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.434 31.950 8.639 33.275 hybrid contribution -0.979 -0.402 0.814 1.335 sum -4.413 31.548 9.453 33.229 Atomic orbital electron populations 1.20243 0.86394 1.04077 1.03326 1.21398 0.99237 0.90004 1.04836 1.25831 0.82225 1.01429 1.05110 1.84783 1.29560 1.15105 1.65572 1.74180 1.21557 0.91805 1.15426 1.23433 0.89708 0.97019 1.08787 1.16828 0.85576 0.82331 0.76680 1.90802 1.17325 1.81566 1.49235 1.45939 1.10112 1.05744 1.74282 1.21212 0.98690 0.79039 0.97955 0.88180 1.22263 1.02837 1.01924 0.95655 1.20963 0.93277 0.81150 1.01401 0.88658 1.22281 0.97875 1.01480 1.01136 1.46032 1.51272 1.06133 1.35176 1.20311 0.79606 0.87650 0.80472 1.90702 1.34738 1.79823 1.33772 1.23285 1.05402 0.93295 1.05534 1.84794 1.63217 1.04304 1.39148 1.22313 1.34300 0.89826 1.20496 0.89356 1.24717 0.95493 0.94069 0.97045 1.69940 1.43428 0.98744 1.39514 0.86732 0.81825 0.80684 0.82591 1.19213 1.19932 1.15941 0.90435 0.90860 0.89358 0.75885 0.75473 0.91514 0.91491 0.90994 0.92145 0.90877 0.91669 0.76359 0.88397 0.88344 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.01 36.01 0.36 -0.12 16 2 C -0.15 -1.06 6.34 -104.11 -0.66 -1.72 16 3 C -0.07 -0.29 12.24 29.69 0.36 0.07 16 4 O 0.13 0.87 11.18 17.23 0.19 1.07 16 5 N -0.33 -2.96 11.84 33.29 0.39 -2.57 16 6 C -0.03 -0.28 7.19 -82.53 -0.59 -0.88 16 7 C 0.60 6.39 7.81 -12.11 -0.09 6.30 16 8 O -0.52 -6.56 15.00 5.37 0.08 -6.48 16 9 N -0.71 -6.44 4.99 -54.59 -0.27 -6.71 16 10 C 0.14 1.25 2.62 -67.93 -0.18 1.07 16 11 H 0.10 1.06 7.58 -51.93 -0.39 0.66 16 12 C -0.17 -1.32 9.00 37.16 0.33 -0.99 16 13 C 0.14 1.47 2.62 -67.93 -0.18 1.30 16 14 H 0.10 1.22 7.58 -51.93 -0.39 0.82 16 15 C -0.17 -1.63 9.00 37.16 0.33 -1.29 16 16 N -0.73 -8.75 4.99 -53.80 -0.27 -9.02 16 17 C 0.53 9.10 7.81 -10.98 -0.09 9.01 16 18 O -0.52 -10.74 15.52 5.56 0.09 -10.65 16 19 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 20 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 21 C -0.52 -14.96 10.04 30.94 0.31 -14.64 16 22 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 23 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 24 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 25 Si 0.86 21.76 27.74 -169.99 -4.72 17.04 16 26 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 28 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.69 6.89 -51.93 -0.36 0.33 16 32 H 0.22 -0.05 8.06 -52.49 -0.42 -0.47 16 33 H 0.41 3.31 6.34 -40.82 -0.26 3.05 16 34 H 0.07 0.48 6.56 -51.93 -0.34 0.14 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.49 6.29 -51.93 -0.33 0.16 16 37 H 0.06 0.47 6.29 -51.93 -0.33 0.15 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 40 H 0.40 3.75 6.58 -40.82 -0.27 3.48 16 41 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -35.87 374.99 -5.57 -41.45 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.54 Total: 2.80 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.63 Total: -44.01 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.36 Total: -16.06 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.72 Total: 17.04 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.87 -5.57 -41.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571754792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.018 kcal (2) G-P(sol) polarization free energy of solvation -35.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds