Wall clock time and date at job start Sat Apr 11 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35317 * 128.03773 * 2 1 4 4 O 1.34021 * 106.66589 * 180.22739 * 3 2 1 5 5 N 1.20912 * 111.84844 * 359.76677 * 4 3 2 6 6 C 1.30985 * 111.43392 * 359.97438 * 5 4 3 7 7 C 1.48331 * 126.93444 * 179.97438 * 6 5 4 8 8 O 1.21500 * 119.99892 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00213 * 0.02562 * 7 6 5 10 10 C 1.46504 * 120.00174 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46697 * 34.99787 * 10 9 7 12 12 C 1.53005 * 109.46829 * 274.99898 * 10 9 7 13 13 C 1.52999 * 109.46795 * 155.00104 * 10 9 7 14 14 H 1.08996 * 109.46929 * 294.99191 * 13 10 9 15 15 C 1.52997 * 109.47317 * 55.00087 * 13 10 9 16 16 N 1.46506 * 109.46684 * 175.00143 * 13 10 9 17 17 C 1.34775 * 119.99693 * 155.00124 * 16 13 10 18 18 O 1.21274 * 120.00425 * 359.97438 * 17 16 13 19 19 C 1.50706 * 119.99541 * 179.97438 * 17 16 13 20 20 S 1.80998 * 109.46775 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99774 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00146 * 0.02562 * 21 20 19 23 23 C 1.38800 * 119.99753 * 179.97438 * 21 20 19 24 24 N 1.31636 * 119.99994 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00104 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47386 * 89.99859 * 25 23 21 27 27 H 1.48509 * 109.46931 * 209.99633 * 25 23 21 28 28 H 1.48492 * 109.46988 * 329.99419 * 25 23 21 29 29 H 1.08995 * 109.46998 * 270.14856 * 1 2 3 30 30 H 1.08998 * 109.46807 * 30.14536 * 1 2 3 31 31 H 1.09004 * 109.47301 * 150.14594 * 1 2 3 32 32 H 1.07992 * 126.66891 * 359.97438 * 3 2 1 33 33 H 0.97000 * 119.99717 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47123 * 299.99923 * 12 10 9 35 35 H 1.09001 * 109.46897 * 60.00279 * 12 10 9 36 36 H 1.08997 * 109.46584 * 179.97438 * 12 10 9 37 37 H 1.09002 * 109.47153 * 299.99641 * 15 13 10 38 38 H 1.09001 * 109.46832 * 179.97438 * 15 13 10 39 39 H 1.09004 * 109.47261 * 59.99813 * 15 13 10 40 40 H 0.97000 * 120.00117 * 334.99772 * 16 13 10 41 41 H 1.09002 * 109.46644 * 299.99282 * 19 17 16 42 42 H 1.08999 * 109.46969 * 59.99809 * 19 17 16 43 43 H 0.97001 * 120.00176 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5774 -0.0051 5 7 3.5989 -0.6317 -0.0035 6 6 2.3837 -1.1205 0.0033 7 6 1.9992 -2.5531 0.0066 8 8 0.8255 -2.8671 0.0126 9 7 2.9518 -3.5066 0.0031 10 6 2.5721 -4.9215 0.0069 11 1 1.6618 -5.0549 -0.5776 12 6 2.3258 -5.3795 1.4459 13 6 3.6994 -5.7537 -0.6073 14 1 3.8151 -5.4892 -1.6583 15 6 5.0060 -5.4707 0.1368 16 7 3.3721 -7.1774 -0.4953 17 6 3.9061 -8.0616 -1.3610 18 8 4.6570 -7.6789 -2.2330 19 6 3.5698 -9.5261 -1.2455 20 16 4.4350 -10.4478 -2.5409 21 6 3.8780 -12.0798 -2.1792 22 1 3.2009 -12.2491 -1.3551 23 6 4.3086 -13.1478 -2.9542 24 7 3.8929 -14.3671 -2.6837 25 14 5.4793 -12.8549 -4.3801 26 1 6.8805 -12.9600 -3.8999 27 1 5.2397 -13.8730 -5.4344 28 1 5.2481 -11.4990 -4.9397 29 1 -0.3633 0.0027 1.0276 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3634 -0.8913 -0.5116 32 1 2.0560 2.1074 -0.0004 33 1 3.8889 -3.2559 -0.0021 34 1 3.2360 -5.2460 2.0305 35 1 1.5227 -4.7865 1.8835 36 1 2.0428 -6.4321 1.4487 37 1 5.2495 -4.4115 0.0535 38 1 5.8090 -6.0640 -0.3006 39 1 4.8902 -5.7353 1.1879 40 1 2.7712 -7.4835 0.2019 41 1 3.8808 -9.8942 -0.2677 42 1 2.4944 -9.6621 -1.3598 43 1 4.1942 -15.1135 -3.2251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571754792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:29 Heat of formation + Delta-G solvation = -40.412050 kcal Electronic energy + Delta-G solvation = -26454.167255 eV Core-core repulsion = 22435.113369 eV Total energy + Delta-G solvation = -4019.053886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.15632 -41.45750 -40.59194 -38.19777 -35.71612 -35.34342 -34.67387 -33.57749 -32.40555 -30.77534 -29.86603 -29.11523 -27.85547 -26.48267 -25.29120 -22.70899 -22.57139 -21.66976 -21.03699 -20.04359 -19.52855 -18.85512 -18.12742 -17.80777 -17.31217 -17.11476 -16.86446 -16.49901 -16.21519 -15.79926 -15.65495 -15.46913 -14.99197 -14.84772 -14.71602 -14.29699 -14.22941 -14.13006 -13.79421 -13.48891 -13.34998 -13.34600 -13.30242 -13.02003 -12.93560 -12.63337 -12.41701 -12.20082 -12.04042 -11.87236 -11.46253 -11.41447 -11.17551 -11.05481 -10.54303 -10.43476 -10.38075 -10.26947 -9.00004 -8.51916 -6.22652 0.01526 0.69533 0.96332 1.30747 1.41712 1.49333 1.52798 1.68396 1.94534 2.19225 2.24274 2.31078 2.70609 2.82803 2.86298 3.34430 3.54397 3.70530 3.81639 3.87316 3.98654 4.07317 4.22069 4.27381 4.36323 4.42796 4.46513 4.58811 4.60279 4.77488 4.80796 4.82631 4.85821 4.94167 5.07383 5.15298 5.31682 5.33318 5.36879 5.70399 6.11370 6.12859 6.38552 6.79707 6.93267 7.01151 7.13258 8.60356 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028832 B = 0.001855 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.914094 B =15092.944785 C =15385.481911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.174 4.174 3 C -0.034 4.034 4 O 0.129 5.871 5 N -0.348 5.348 6 C -0.057 4.057 7 C 0.599 3.401 8 O -0.544 6.544 9 N -0.700 5.700 10 C 0.144 3.856 11 H 0.086 0.914 12 C -0.165 4.165 13 C 0.142 3.858 14 H 0.074 0.926 15 C -0.164 4.164 16 N -0.705 5.705 17 C 0.539 3.461 18 O -0.557 6.557 19 C -0.112 4.112 20 S -0.175 6.175 21 C -0.529 4.529 22 H 0.063 0.937 23 C 0.045 3.955 24 N -0.916 5.916 25 Si 0.914 3.086 26 H -0.262 1.262 27 H -0.260 1.260 28 H -0.237 1.237 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.275 0.725 33 H 0.413 0.587 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.416 0.584 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 35.200 10.948 37.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.180 4.180 3 C -0.114 4.114 4 O 0.052 5.948 5 N -0.047 5.047 6 C -0.215 4.215 7 C 0.384 3.616 8 O -0.420 6.420 9 N -0.354 5.354 10 C 0.039 3.961 11 H 0.104 0.896 12 C -0.223 4.223 13 C 0.036 3.964 14 H 0.093 0.907 15 C -0.223 4.223 16 N -0.361 5.361 17 C 0.325 3.675 18 O -0.435 6.435 19 C -0.263 4.263 20 S 0.052 5.948 21 C -0.676 4.676 22 H 0.081 0.919 23 C -0.160 4.160 24 N -0.554 5.554 25 Si 0.736 3.264 26 H -0.187 1.187 27 H -0.184 1.184 28 H -0.161 1.161 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.290 0.710 33 H 0.252 0.748 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.256 0.744 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.272 34.747 9.477 36.165 hybrid contribution -1.114 -1.102 0.685 1.711 sum -4.386 33.645 10.162 35.419 Atomic orbital electron populations 1.20221 0.85771 1.04067 1.03539 1.21695 0.99970 0.90071 1.06254 1.26683 0.80394 1.02757 1.01591 1.84751 1.30837 1.14378 1.64818 1.74178 1.21521 0.92739 1.16308 1.23472 0.90748 0.96839 1.10432 1.17076 0.85299 0.83156 0.76103 1.90780 1.18373 1.82170 1.50675 1.45895 1.10261 1.05494 1.73780 1.21070 0.97264 0.79031 0.98704 0.89556 1.22250 1.03184 1.02506 0.94342 1.20988 0.94623 0.80065 1.00709 0.90739 1.22236 0.96020 1.02358 1.01645 1.45770 1.50111 1.06214 1.34052 1.19947 0.79496 0.87319 0.80724 1.90696 1.36871 1.80206 1.35737 1.23279 1.05445 0.93779 1.03819 1.84718 1.64552 1.03025 1.42549 1.22464 1.33603 0.91946 1.19617 0.91863 1.25565 0.97045 0.93922 0.99500 1.70018 1.44833 0.99644 1.40929 0.85868 0.79886 0.80688 0.79931 1.18663 1.18412 1.16133 0.90142 0.88072 0.92088 0.70951 0.74833 0.90339 0.92217 0.89662 0.90277 0.93209 0.89887 0.74432 0.86530 0.86746 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.01 71.24 0.71 -0.10 16 2 C -0.17 -2.21 6.34 -19.54 -0.12 -2.33 16 3 C -0.03 -0.20 12.24 67.15 0.82 0.62 16 4 O 0.13 1.51 11.18 71.82 0.80 2.32 16 5 N -0.35 -5.87 11.84 -49.52 -0.59 -6.46 16 6 C -0.06 -1.04 7.19 42.96 0.31 -0.73 16 7 C 0.60 12.75 7.81 86.93 0.68 13.43 16 8 O -0.54 -14.17 15.00 -3.71 -0.06 -14.22 16 9 N -0.70 -12.40 4.99 -444.92 -2.22 -14.62 16 10 C 0.14 2.53 2.62 44.99 0.12 2.65 16 11 H 0.09 1.80 7.58 -2.39 -0.02 1.79 16 12 C -0.16 -2.28 9.00 71.98 0.65 -1.64 16 13 C 0.14 2.89 2.62 44.99 0.12 3.00 16 14 H 0.07 1.90 7.58 -2.39 -0.02 1.88 16 15 C -0.16 -2.91 9.00 71.98 0.65 -2.27 16 16 N -0.71 -15.84 4.99 -442.53 -2.21 -18.05 16 17 C 0.54 17.88 7.81 87.66 0.68 18.56 16 18 O -0.56 -23.12 15.52 -3.01 -0.05 -23.17 16 19 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16 20 S -0.17 -8.76 18.55 -56.49 -1.05 -9.81 16 21 C -0.53 -30.65 10.04 67.95 0.68 -29.97 16 22 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 23 C 0.05 2.65 5.50 84.86 0.47 3.11 16 24 N -0.92 -55.77 13.97 21.65 0.30 -55.46 16 25 Si 0.91 45.05 27.74 68.60 1.90 46.95 16 26 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 28 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.98 6.89 -2.39 -0.02 0.96 16 32 H 0.28 -1.54 8.06 -2.91 -0.02 -1.57 16 33 H 0.41 6.36 6.34 -92.71 -0.59 5.77 16 34 H 0.08 0.92 6.56 -2.39 -0.02 0.91 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.94 6.29 -2.39 -0.02 0.93 16 37 H 0.08 1.11 6.29 -2.39 -0.02 1.09 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.18 6.57 -2.38 -0.02 1.17 16 40 H 0.42 6.79 6.58 -92.71 -0.61 6.18 16 41 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 42 H 0.11 3.85 8.14 -2.40 -0.02 3.84 16 43 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -80.34 374.99 2.89 -77.45 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -0.16 Total: 14.41 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 6.20 Total: 0.67 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -4.71 Total: -94.59 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: 0.70 Total: -35.08 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.90 Total: 46.95 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.05 Total: -9.81 kcal Total: -80.34 2.89 -77.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571754792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.036 kcal (2) G-P(sol) polarization free energy of solvation -80.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds