Wall clock time and date at job start Sat Apr 11 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39838 * 126.45752 * 2 1 4 4 C 1.35456 * 107.86539 * 180.30664 * 3 2 1 5 5 N 1.35537 * 108.86664 * 359.73865 * 4 3 2 6 6 H 0.97005 * 125.66997 * 179.97438 * 5 4 3 7 7 C 1.37647 * 108.64567 * 0.02562 * 5 4 3 8 8 C 1.46685 * 126.22861 * 180.02562 * 7 5 4 9 9 O 1.21693 * 119.99668 * 180.02562 * 8 7 5 10 10 N 1.34773 * 120.00221 * 0.02562 * 8 7 5 11 11 C 1.46504 * 119.99858 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47208 * 35.00495 * 11 10 8 13 13 C 1.52997 * 109.47349 * 275.00218 * 11 10 8 14 14 O 1.42898 * 109.47319 * 295.00332 * 13 11 10 15 15 C 1.53007 * 109.46612 * 155.00194 * 11 10 8 16 16 N 1.46494 * 109.47545 * 305.00137 * 15 11 10 17 17 C 1.34776 * 120.00130 * 180.02562 * 16 15 11 18 18 O 1.21273 * 120.00018 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99797 * 180.02562 * 17 16 15 20 20 S 1.81002 * 109.47010 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99830 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00541 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99665 * 180.02562 * 21 20 19 24 24 N 1.31629 * 119.99906 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00102 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47010 * 90.00329 * 25 23 21 27 27 H 1.48503 * 109.47107 * 210.00114 * 25 23 21 28 28 H 1.48502 * 109.47099 * 330.00553 * 25 23 21 29 29 H 1.08998 * 109.46724 * 270.13328 * 1 2 3 30 30 H 1.09005 * 109.47313 * 30.13568 * 1 2 3 31 31 H 1.09000 * 109.47205 * 150.13663 * 1 2 3 32 32 H 1.08001 * 126.07126 * 0.02562 * 3 2 1 33 33 H 1.07996 * 125.56711 * 179.70783 * 4 3 2 34 34 H 0.97000 * 120.00320 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.47153 * 175.00025 * 13 11 10 36 36 H 1.09001 * 109.46832 * 55.00216 * 13 11 10 37 37 H 0.96701 * 113.99881 * 180.02562 * 14 13 11 38 38 H 1.08995 * 109.47221 * 65.00654 * 15 11 10 39 39 H 1.09005 * 109.46665 * 184.99888 * 15 11 10 40 40 H 0.97003 * 119.99396 * 359.97438 * 16 15 11 41 41 H 1.08998 * 109.47149 * 299.99692 * 19 17 16 42 42 H 1.09005 * 109.47530 * 60.00018 * 19 17 16 43 43 H 0.97001 * 120.00012 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 -0.0069 5 7 3.6283 -0.6625 -0.0054 6 1 4.4191 -1.2244 -0.0097 7 6 2.3262 -1.1088 0.0020 8 6 1.8899 -2.5093 0.0065 9 8 0.7027 -2.7766 0.0126 10 7 2.8037 -3.4999 0.0038 11 6 2.3677 -4.8986 0.0088 12 1 1.4530 -4.9961 -0.5758 13 6 2.1032 -5.3452 1.4481 14 8 3.3275 -5.3281 2.1848 15 6 3.4611 -5.7756 -0.6046 16 7 3.7987 -5.2737 -1.9388 17 6 4.7432 -5.8942 -2.6732 18 8 5.3140 -6.8678 -2.2293 19 6 5.0907 -5.3775 -4.0456 20 16 6.3841 -6.4152 -4.7712 21 6 6.5883 -5.6083 -6.3242 22 1 5.9917 -4.7407 -6.5647 23 6 7.5160 -6.0876 -7.2387 24 7 7.6689 -5.4845 -8.3986 25 14 8.5485 -7.5877 -6.8226 26 1 7.8424 -8.8146 -7.2715 27 1 9.8608 -7.4919 -7.5111 28 1 8.7630 -7.6493 -5.3544 29 1 -0.3633 0.0024 1.0277 30 1 -0.3634 0.8888 -0.5160 31 1 -0.3633 -0.8912 -0.5117 32 1 2.0137 2.1549 0.0004 33 1 4.4972 1.3252 -0.0131 34 1 3.7500 -3.2869 -0.0006 35 1 1.6946 -6.3557 1.4456 36 1 1.3893 -4.6658 1.9139 37 1 3.2348 -5.6011 3.1079 38 1 4.3475 -5.7477 0.0291 39 1 3.1025 -6.8020 -0.6824 40 1 3.3418 -4.4952 -2.2940 41 1 4.2044 -5.4048 -4.6793 42 1 5.4500 -4.3513 -3.9673 43 1 8.3175 -5.8193 -9.0375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735247521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:41 Heat of formation + Delta-G solvation = -82.827783 kcal Electronic energy + Delta-G solvation = -26755.923540 eV Core-core repulsion = 22735.030370 eV Total energy + Delta-G solvation = -4020.893170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.67977 -40.01633 -39.07923 -37.53679 -35.63038 -33.89331 -32.74667 -32.46811 -31.24203 -29.83109 -29.03937 -27.08044 -25.82590 -25.46552 -23.26008 -21.54436 -20.78200 -20.53398 -19.66524 -18.97432 -17.92643 -17.91032 -16.83427 -16.50680 -16.21195 -15.68347 -15.45705 -15.20103 -14.97135 -14.78399 -14.42587 -14.10960 -13.96421 -13.83516 -13.69856 -13.42810 -13.29538 -12.95189 -12.88145 -12.81732 -12.54743 -12.39309 -11.99688 -11.86052 -11.66525 -11.29685 -11.03580 -10.65572 -10.53225 -10.21742 -9.89344 -9.65613 -9.53830 -9.10032 -9.08982 -9.02091 -8.54206 -8.47558 -6.95680 -6.31762 -4.03982 1.13623 2.42339 2.60950 2.72559 2.79956 2.90459 3.04885 3.25987 3.31343 3.47608 3.60229 3.82506 4.27554 4.30207 4.54223 4.63461 4.71658 4.72452 4.88335 4.91812 5.00068 5.06010 5.07337 5.16346 5.24678 5.43417 5.48822 5.60710 5.64275 5.69972 5.75098 5.85709 5.95743 5.97859 6.12574 6.39017 6.40281 6.63848 6.99536 7.14928 7.19158 7.49390 7.81118 7.91269 8.38749 8.40276 9.14242 10.77496 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012321 B = 0.002551 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.015457 B =10974.148565 C =12511.686282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.071 4.071 3 C -0.214 4.214 4 C 0.031 3.969 5 N -0.540 5.540 6 H 0.417 0.583 7 C -0.065 4.065 8 C 0.592 3.408 9 O -0.528 6.528 10 N -0.722 5.722 11 C 0.141 3.859 12 H 0.111 0.889 13 C 0.067 3.933 14 O -0.568 6.568 15 C 0.116 3.884 16 N -0.739 5.739 17 C 0.531 3.469 18 O -0.516 6.516 19 C -0.124 4.124 20 S -0.140 6.140 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.172 0.828 34 H 0.399 0.601 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.381 0.619 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.652 10.302 22.912 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.238 4.238 4 C -0.105 4.105 5 N -0.136 5.136 6 H 0.255 0.745 7 C -0.177 4.177 8 C 0.381 3.619 9 O -0.405 6.405 10 N -0.374 5.374 11 C 0.036 3.964 12 H 0.128 0.872 13 C -0.013 4.013 14 O -0.374 6.374 15 C -0.008 4.008 16 N -0.394 5.394 17 C 0.317 3.683 18 O -0.390 6.390 19 C -0.275 4.275 20 S 0.086 5.914 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.161 0.839 33 H 0.189 0.811 34 H 0.234 0.766 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.228 0.772 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.125 8.517 22.899 27.275 hybrid contribution 0.355 0.713 -0.285 0.846 sum -11.770 9.230 22.614 27.113 Atomic orbital electron populations 1.20350 0.89285 1.03011 1.02118 1.19973 0.95895 0.90782 1.01319 1.20829 0.91827 0.98885 1.12307 1.22067 0.99689 0.82938 1.05792 1.41975 1.07172 1.07391 1.57026 0.74540 1.20124 0.83872 0.93308 1.20443 1.17075 0.85765 0.83094 0.75958 1.90815 1.15908 1.83293 1.50494 1.45883 1.09772 1.05645 1.76060 1.21372 0.99288 0.80342 0.95445 0.87160 1.22531 0.86720 1.00382 0.91651 1.86465 1.32087 1.91539 1.27318 1.21513 0.98277 0.97447 0.83606 1.45977 1.41943 1.34019 1.17488 1.20284 0.78482 0.83099 0.86447 1.90710 1.50871 1.25724 1.71727 1.23281 1.04541 1.04510 0.95181 1.84787 1.45805 1.41528 1.19268 1.22312 1.27283 1.17812 0.99568 0.89405 1.24719 0.95844 0.96866 0.93886 1.69938 1.34764 1.40129 1.06820 0.86732 0.80342 0.83150 0.81600 1.19180 1.19919 1.15933 0.91621 0.91933 0.90131 0.83910 0.81067 0.76634 0.92096 0.92418 0.77151 0.89712 0.89982 0.76682 0.88473 0.88585 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 9.83 36.00 0.35 -0.49 16 2 C -0.07 -0.71 6.21 -104.16 -0.65 -1.36 16 3 C -0.21 -1.77 10.76 -39.98 -0.43 -2.20 16 4 C 0.03 0.21 11.89 -16.91 -0.20 0.01 16 5 N -0.54 -3.88 5.99 -9.39 -0.06 -3.94 16 6 H 0.42 2.05 8.19 -40.82 -0.33 1.71 16 7 C -0.07 -0.64 7.06 -81.98 -0.58 -1.22 16 8 C 0.59 6.17 7.75 -12.85 -0.10 6.07 16 9 O -0.53 -6.82 14.47 5.19 0.08 -6.74 16 10 N -0.72 -6.02 4.46 -55.11 -0.25 -6.27 16 11 C 0.14 1.19 2.53 -67.93 -0.17 1.02 16 12 H 0.11 0.98 7.58 -51.93 -0.39 0.59 16 13 C 0.07 0.48 6.85 37.16 0.25 0.74 16 14 O -0.57 -4.21 12.64 -35.23 -0.45 -4.65 16 15 C 0.12 1.21 5.12 -4.04 -0.02 1.19 16 16 N -0.74 -8.89 5.39 -60.30 -0.32 -9.21 16 17 C 0.53 9.08 7.85 -10.99 -0.09 8.99 16 18 O -0.52 -10.80 15.86 5.56 0.09 -10.71 16 19 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 20 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 21 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 22 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 23 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 24 N -0.88 -26.48 13.97 55.49 0.78 -25.70 16 25 Si 0.86 21.65 27.74 -169.99 -4.71 16.94 16 26 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.87 6.49 -51.93 -0.34 0.53 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.40 2.92 7.73 -40.82 -0.32 2.61 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.38 1.33 9.12 45.56 0.42 1.75 16 38 H 0.08 0.99 7.39 -51.93 -0.38 0.61 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.40 4.07 8.14 -40.82 -0.33 3.74 16 41 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 42 H 0.10 1.68 8.14 -51.91 -0.42 1.25 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -37.19 381.63 -7.34 -44.54 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.06 Total: 6.83 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.19 Total: -1.33 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.15 Total: -45.12 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.28 Total: -22.11 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.19 -7.34 -44.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735247521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.291 kcal (2) G-P(sol) polarization free energy of solvation -37.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds