Wall clock time and date at job start Sat Apr 11 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31920 * 119.03718 * 2 1 4 4 C 1.32165 * 121.04429 * 179.97438 * 3 2 1 5 5 C 1.38821 * 119.14178 * 0.02562 * 4 3 2 6 6 C 1.39521 * 118.26002 * 0.27342 * 5 4 3 7 7 C 1.48381 * 120.55130 * 179.70825 * 6 5 4 8 8 O 1.21386 * 119.99930 * 359.97438 * 7 6 5 9 9 O 1.34638 * 119.99657 * 180.02562 * 7 6 5 10 10 C 1.45193 * 116.99730 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47140 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00150 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99957 * 179.97438 * 11 10 9 14 14 C 1.37142 * 120.00151 * 354.95763 * 13 11 10 15 15 H 1.07999 * 120.00059 * 344.73453 * 14 13 11 16 16 C 1.38893 * 120.00107 * 164.74445 * 14 13 11 17 17 N 1.31423 * 120.00006 * 343.61973 * 16 14 13 18 18 Si 1.86793 * 119.99897 * 163.62225 * 16 14 13 19 19 H 1.48497 * 109.47396 * 59.99791 * 18 16 14 20 20 H 1.48510 * 109.47063 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47290 * 299.99529 * 18 16 14 22 22 C 1.39786 * 120.00049 * 174.95425 * 13 11 10 23 23 C 1.38958 * 120.07878 * 101.20554 * 22 13 11 24 24 C 1.38088 * 119.92385 * 179.79094 * 23 22 13 25 25 C 1.38308 * 120.07640 * 0.46839 * 24 23 22 26 26 C 1.38315 * 120.15411 * 359.78963 * 25 24 23 27 27 C 1.38078 * 120.07818 * 359.97438 * 26 25 24 28 28 N 1.31538 * 119.04076 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47255 * 90.00126 * 1 2 3 30 30 H 1.09000 * 109.46971 * 210.00333 * 1 2 3 31 31 H 1.09003 * 109.47442 * 329.99801 * 1 2 3 32 32 H 1.08003 * 120.43239 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.86743 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47572 * 299.99566 * 10 9 7 35 35 H 1.09004 * 109.47431 * 59.99917 * 10 9 7 36 36 H 0.96994 * 120.00140 * 185.02182 * 17 16 14 37 37 H 1.07998 * 120.04186 * 0.02562 * 23 22 13 38 38 H 1.07994 * 119.96274 * 180.26017 * 24 23 22 39 39 H 1.07997 * 119.92491 * 179.76818 * 25 24 23 40 40 H 1.08002 * 119.95949 * 180.02562 * 26 25 24 41 41 H 1.08009 * 120.03945 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1534 0.0000 4 6 3.4681 1.1997 0.0005 5 6 4.1862 0.0116 0.0005 6 6 3.4762 -1.1894 -0.0059 7 6 4.1923 -2.4889 -0.0127 8 8 5.4060 -2.5131 -0.0132 9 8 3.4960 -3.6412 -0.0194 10 6 4.2623 -4.8744 -0.0264 11 6 3.3207 -6.0510 -0.0326 12 8 2.1217 -5.8682 -0.0317 13 7 3.8109 -7.3064 -0.0402 14 6 5.1623 -7.5143 -0.1466 15 1 5.8085 -6.7110 -0.4685 16 6 5.6999 -8.7579 0.1592 17 7 4.9939 -9.6281 0.8460 18 14 7.4263 -9.1935 -0.4054 19 1 8.3953 -8.2307 0.1770 20 1 7.7628 -10.5678 0.0459 21 1 7.4937 -9.1283 -1.8874 22 6 2.9419 -8.3967 0.0606 23 6 2.5935 -9.1170 -1.0756 24 6 1.7383 -10.1961 -0.9718 25 6 1.2208 -10.5544 0.2598 26 6 1.5611 -9.8365 1.3920 27 6 2.4196 -8.7593 1.2962 28 7 2.1455 -1.1500 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 3.9822 2.1495 0.0009 33 1 5.2662 0.0169 0.0013 34 1 4.8905 -4.9068 -0.9165 35 1 4.8905 -4.9170 0.8634 36 1 5.3942 -10.4672 1.1223 37 1 2.9942 -8.8355 -2.0382 38 1 1.4705 -10.7589 -1.8537 39 1 0.5491 -11.3966 0.3376 40 1 1.1555 -10.1193 2.3522 41 1 2.6847 -8.1988 2.1807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061789874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:11 Heat of formation + Delta-G solvation = -15.969218 kcal Electronic energy + Delta-G solvation = -28431.277873 eV Core-core repulsion = 24277.839957 eV Total energy + Delta-G solvation = -4153.437916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.51135 -40.13170 -39.29165 -37.36843 -36.18908 -34.78921 -34.17243 -33.52392 -31.78836 -29.91569 -29.73501 -28.76669 -27.80752 -25.85666 -25.02399 -23.49947 -21.89993 -21.55610 -21.07875 -19.42608 -18.65836 -18.05987 -17.61673 -16.51552 -16.47984 -16.16670 -15.63379 -15.52889 -15.39406 -14.91853 -14.80052 -14.52898 -14.30010 -13.71278 -13.62225 -13.53125 -12.94145 -12.84551 -12.57820 -12.47747 -12.29036 -12.20075 -11.65325 -11.54414 -11.23173 -11.20079 -11.11294 -11.00955 -10.92139 -10.59394 -10.45940 -10.39993 -10.27463 -9.82922 -9.60923 -9.49999 -8.70997 -8.23638 -7.89777 -7.62462 -6.34620 -4.14595 0.13184 0.63062 2.31631 2.33887 2.46440 2.49558 3.03582 3.14086 3.14614 3.49117 3.55093 3.57695 3.71660 3.94009 4.23227 4.44805 4.65788 4.78241 4.79887 4.97745 5.08715 5.17841 5.37002 5.48511 5.59331 5.66866 5.70327 5.77586 5.83120 5.88729 5.99398 6.04085 6.37732 6.41574 6.53421 6.56242 6.75802 7.01272 7.19198 7.29723 7.42577 7.52999 7.58180 7.70750 7.80221 7.91207 8.32133 8.87008 9.19362 9.62580 10.49739 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.002991 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.096848 B = 9360.094251 C =11051.544308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.316 3.684 3 N -0.503 5.503 4 C 0.153 3.847 5 C -0.175 4.175 6 C 0.159 3.841 7 C 0.517 3.483 8 O -0.491 6.491 9 O -0.303 6.303 10 C 0.069 3.931 11 C 0.464 3.536 12 O -0.570 6.570 13 N -0.406 5.406 14 C -0.365 4.365 15 H 0.103 0.897 16 C 0.050 3.950 17 N -0.842 5.842 18 Si 0.922 3.078 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.271 1.271 22 C 0.238 3.762 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.144 4.144 26 C -0.121 4.121 27 C -0.066 4.066 28 N -0.464 5.464 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.181 0.819 33 H 0.164 0.836 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.275 0.725 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 12.907 -0.917 13.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 N -0.218 5.218 4 C -0.015 4.015 5 C -0.198 4.198 6 C 0.012 3.988 7 C 0.358 3.642 8 O -0.378 6.378 9 O -0.216 6.216 10 C -0.008 4.008 11 C 0.252 3.748 12 O -0.453 6.453 13 N -0.124 5.124 14 C -0.491 4.491 15 H 0.121 0.879 16 C -0.159 4.159 17 N -0.476 5.476 18 Si 0.748 3.252 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.196 1.196 22 C 0.148 3.852 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.162 4.162 26 C -0.140 4.140 27 C -0.085 4.085 28 N -0.181 5.181 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.198 0.802 33 H 0.182 0.818 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.778 12.632 -0.875 13.214 hybrid contribution 2.459 -0.558 -0.186 2.528 sum -1.319 12.074 -1.061 12.192 Atomic orbital electron populations 1.20639 0.84856 1.04654 1.04350 1.23425 0.98647 0.82595 0.90464 1.68227 1.10450 1.30575 1.12585 1.23364 0.89386 0.98457 0.90283 1.22965 1.03966 0.92590 1.00236 1.20550 0.90110 0.91757 0.96407 1.20667 0.85247 0.84521 0.73753 1.90858 1.13865 1.87877 1.45225 1.86670 1.39720 1.13592 1.81624 1.22797 0.93358 0.79926 1.04674 1.19416 0.88323 0.83354 0.83684 1.90644 1.15179 1.84888 1.54638 1.41158 1.06396 1.01747 1.63116 1.19586 0.81062 0.99394 1.49042 0.87909 1.25270 0.99860 0.95747 0.95063 1.69926 1.36766 1.09452 1.31485 0.86066 0.81574 0.78050 0.79519 1.19609 1.20664 1.19607 1.17035 0.88525 0.87277 0.92378 1.20980 0.98811 0.96557 0.97723 1.20664 0.99005 0.97538 0.96943 1.20756 1.01980 1.00312 0.93137 1.20686 0.99372 0.96417 0.97526 1.20806 0.95391 0.96068 0.96242 1.68406 1.08380 1.30670 1.10606 0.89209 0.88895 0.89392 0.80232 0.81824 0.88751 0.88239 0.91401 0.87418 0.87522 0.87688 0.87489 0.87640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 10.31 36.00 0.37 -0.42 16 2 C 0.32 3.93 7.64 -157.31 -1.20 2.72 16 3 N -0.50 -5.58 10.32 -10.73 -0.11 -5.69 16 4 C 0.15 1.36 11.31 -17.19 -0.19 1.17 16 5 C -0.18 -1.87 9.72 -38.89 -0.38 -2.25 16 6 C 0.16 2.32 6.79 -82.65 -0.56 1.76 16 7 C 0.52 8.92 7.97 34.91 0.28 9.19 16 8 O -0.49 -8.67 16.21 -19.18 -0.31 -8.99 16 9 O -0.30 -6.11 9.61 -47.00 -0.45 -6.56 16 10 C 0.07 1.41 4.50 36.01 0.16 1.57 16 11 C 0.46 11.29 7.66 -10.98 -0.08 11.20 16 12 O -0.57 -15.41 16.48 -14.10 -0.23 -15.65 16 13 N -0.41 -10.10 2.66 -58.98 -0.16 -10.26 16 14 C -0.37 -8.89 9.19 -14.93 -0.14 -9.03 16 15 H 0.10 2.32 6.46 -52.49 -0.34 1.98 16 16 C 0.05 1.20 5.24 -17.48 -0.09 1.11 16 17 N -0.84 -21.17 10.34 55.49 0.57 -20.60 16 18 Si 0.92 18.92 29.59 -169.99 -5.03 13.89 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 C 0.24 5.87 2.29 -83.70 -0.19 5.67 16 23 C -0.12 -2.78 9.95 -39.37 -0.39 -3.17 16 24 C -0.12 -2.46 10.04 -39.61 -0.40 -2.86 16 25 C -0.14 -2.75 10.04 -39.53 -0.40 -3.15 16 26 C -0.12 -2.47 10.04 -39.61 -0.40 -2.87 16 27 C -0.07 -1.54 8.66 -39.37 -0.34 -1.89 16 28 N -0.46 -7.09 10.15 -7.34 -0.07 -7.16 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.18 0.82 8.06 -52.48 -0.42 0.39 16 33 H 0.16 1.41 7.74 -52.49 -0.41 1.01 16 34 H 0.09 1.80 7.52 -51.93 -0.39 1.40 16 35 H 0.10 1.94 8.13 -51.93 -0.42 1.52 16 36 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 37 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 38 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.11 2.51 8.06 -52.48 -0.42 2.09 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -31.89 368.95 -8.68 -40.58 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.50 Total: 6.10 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -3.95 Total: 8.77 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.23 Total: -43.71 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.99 Total: -31.20 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.89 -8.68 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061789874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.609 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds