Wall clock time and date at job start Sat Apr 11 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31920 * 119.03718 * 2 1 4 4 C 1.32165 * 121.04429 * 179.97438 * 3 2 1 5 5 C 1.38821 * 119.14178 * 0.02562 * 4 3 2 6 6 C 1.39521 * 118.26002 * 0.27342 * 5 4 3 7 7 C 1.48381 * 120.55130 * 179.70825 * 6 5 4 8 8 O 1.21386 * 119.99930 * 359.97438 * 7 6 5 9 9 O 1.34638 * 119.99657 * 180.02562 * 7 6 5 10 10 C 1.45193 * 116.99730 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47140 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00150 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99957 * 179.97438 * 11 10 9 14 14 C 1.37142 * 120.00151 * 354.95763 * 13 11 10 15 15 H 1.07999 * 120.00059 * 344.73453 * 14 13 11 16 16 C 1.38893 * 120.00107 * 164.74445 * 14 13 11 17 17 N 1.31423 * 120.00006 * 343.61973 * 16 14 13 18 18 Si 1.86793 * 119.99897 * 163.62225 * 16 14 13 19 19 H 1.48497 * 109.47396 * 59.99791 * 18 16 14 20 20 H 1.48510 * 109.47063 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47290 * 299.99529 * 18 16 14 22 22 C 1.39786 * 120.00049 * 174.95425 * 13 11 10 23 23 C 1.38958 * 120.07878 * 101.20554 * 22 13 11 24 24 C 1.38088 * 119.92385 * 179.79094 * 23 22 13 25 25 C 1.38308 * 120.07640 * 0.46839 * 24 23 22 26 26 C 1.38315 * 120.15411 * 359.78963 * 25 24 23 27 27 C 1.38078 * 120.07818 * 359.97438 * 26 25 24 28 28 N 1.31538 * 119.04076 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47255 * 90.00126 * 1 2 3 30 30 H 1.09000 * 109.46971 * 210.00333 * 1 2 3 31 31 H 1.09003 * 109.47442 * 329.99801 * 1 2 3 32 32 H 1.08003 * 120.43239 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.86743 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47572 * 299.99566 * 10 9 7 35 35 H 1.09004 * 109.47431 * 59.99917 * 10 9 7 36 36 H 0.96994 * 120.00140 * 185.02182 * 17 16 14 37 37 H 1.07998 * 120.04186 * 0.02562 * 23 22 13 38 38 H 1.07994 * 119.96274 * 180.26017 * 24 23 22 39 39 H 1.07997 * 119.92491 * 179.76818 * 25 24 23 40 40 H 1.08002 * 119.95949 * 180.02562 * 26 25 24 41 41 H 1.08009 * 120.03945 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1534 0.0000 4 6 3.4681 1.1997 0.0005 5 6 4.1862 0.0116 0.0005 6 6 3.4762 -1.1894 -0.0059 7 6 4.1923 -2.4889 -0.0127 8 8 5.4060 -2.5131 -0.0132 9 8 3.4960 -3.6412 -0.0194 10 6 4.2623 -4.8744 -0.0264 11 6 3.3207 -6.0510 -0.0326 12 8 2.1217 -5.8682 -0.0317 13 7 3.8109 -7.3064 -0.0402 14 6 5.1623 -7.5143 -0.1466 15 1 5.8085 -6.7110 -0.4685 16 6 5.6999 -8.7579 0.1592 17 7 4.9939 -9.6281 0.8460 18 14 7.4263 -9.1935 -0.4054 19 1 8.3953 -8.2307 0.1770 20 1 7.7628 -10.5678 0.0459 21 1 7.4937 -9.1283 -1.8874 22 6 2.9419 -8.3967 0.0606 23 6 2.5935 -9.1170 -1.0756 24 6 1.7383 -10.1961 -0.9718 25 6 1.2208 -10.5544 0.2598 26 6 1.5611 -9.8365 1.3920 27 6 2.4196 -8.7593 1.2962 28 7 2.1455 -1.1500 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 3.9822 2.1495 0.0009 33 1 5.2662 0.0169 0.0013 34 1 4.8905 -4.9068 -0.9165 35 1 4.8905 -4.9170 0.8634 36 1 5.3942 -10.4672 1.1223 37 1 2.9942 -8.8355 -2.0382 38 1 1.4705 -10.7589 -1.8537 39 1 0.5491 -11.3966 0.3376 40 1 1.1555 -10.1193 2.3522 41 1 2.6847 -8.1988 2.1807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061789874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:09 Heat of formation + Delta-G solvation = -33.365916 kcal Electronic energy + Delta-G solvation = -28432.032250 eV Core-core repulsion = 24277.839957 eV Total energy + Delta-G solvation = -4154.192294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -42.51557 -41.58045 -40.96219 -39.06165 -37.69605 -36.64734 -35.11911 -34.38326 -33.67196 -31.58696 -31.41601 -29.58261 -29.38041 -27.10576 -26.79803 -24.42922 -23.44460 -23.23063 -22.38913 -21.26631 -19.89808 -19.74585 -18.67561 -17.97263 -17.88004 -17.78780 -17.25400 -16.63496 -16.56939 -16.46792 -16.19795 -16.06880 -15.75577 -15.21595 -15.16550 -14.59475 -14.42880 -14.13175 -13.96425 -13.92950 -13.52806 -13.41056 -13.26800 -13.23435 -12.87170 -12.74913 -12.28280 -12.25850 -12.10630 -12.09684 -12.09155 -12.04472 -11.93632 -11.29538 -10.69255 -10.64881 -10.52441 -10.08433 -9.58922 -9.36436 -8.17183 -6.05556 -0.89109 -0.19341 0.72598 0.79070 1.06176 1.11023 1.36220 1.45587 1.54024 1.74729 2.21147 2.49690 2.56100 2.82160 2.96499 3.01979 3.21306 3.42986 3.53230 3.84032 3.91822 4.05769 4.13271 4.22974 4.27750 4.31598 4.38465 4.40491 4.69390 4.73469 4.77686 4.88696 4.95587 4.99436 5.05832 5.27805 5.31889 5.34347 5.60834 5.65810 5.75539 5.78592 5.97495 6.19096 6.28679 6.51790 6.84277 6.98358 7.33195 7.76089 8.64671 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.002991 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.096848 B = 9360.094251 C =11051.544308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.305 3.695 3 N -0.505 5.505 4 C 0.170 3.830 5 C -0.159 4.159 6 C 0.126 3.874 7 C 0.516 3.484 8 O -0.500 6.500 9 O -0.326 6.326 10 C 0.081 3.919 11 C 0.449 3.551 12 O -0.610 6.610 13 N -0.410 5.410 14 C -0.385 4.385 15 H 0.114 0.886 16 C 0.012 3.988 17 N -0.861 5.861 18 Si 0.987 3.013 19 H -0.262 1.262 20 H -0.281 1.281 21 H -0.269 1.269 22 C 0.207 3.793 23 C -0.148 4.148 24 C -0.119 4.119 25 C -0.137 4.137 26 C -0.120 4.120 27 C -0.094 4.094 28 N -0.507 5.507 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.233 0.767 33 H 0.186 0.814 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.274 0.726 37 H 0.101 0.899 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.137 0.863 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 13.610 -1.335 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.038 3.962 3 N -0.220 5.220 4 C 0.002 3.998 5 C -0.181 4.181 6 C -0.018 4.018 7 C 0.359 3.641 8 O -0.388 6.388 9 O -0.240 6.240 10 C 0.005 3.995 11 C 0.238 3.762 12 O -0.496 6.496 13 N -0.127 5.127 14 C -0.510 4.510 15 H 0.132 0.868 16 C -0.195 4.195 17 N -0.496 5.496 18 Si 0.810 3.190 19 H -0.187 1.187 20 H -0.207 1.207 21 H -0.194 1.194 22 C 0.118 3.882 23 C -0.167 4.167 24 C -0.137 4.137 25 C -0.155 4.155 26 C -0.139 4.139 27 C -0.114 4.114 28 N -0.224 5.224 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.249 0.751 33 H 0.204 0.796 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.155 0.845 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.227 13.329 -1.289 13.775 hybrid contribution 2.245 -0.735 -0.032 2.362 sum -0.982 12.594 -1.321 12.701 Atomic orbital electron populations 1.20741 0.83201 1.05197 1.05217 1.23922 0.99811 0.82295 0.90143 1.68356 1.11574 1.29583 1.12440 1.24252 0.88609 0.99640 0.87326 1.23285 1.04997 0.91505 0.98336 1.20471 0.90562 0.91361 0.99425 1.21226 0.85437 0.84570 0.72905 1.90825 1.14115 1.88008 1.45834 1.86675 1.40662 1.14252 1.82366 1.22549 0.92306 0.79365 1.05326 1.20021 0.88481 0.84237 0.83425 1.90587 1.16829 1.85532 1.56680 1.41404 1.06886 1.02207 1.62173 1.19998 0.81230 1.00245 1.49553 0.86815 1.26083 1.03388 0.95328 0.94668 1.70086 1.38133 1.09478 1.31861 0.85077 0.77296 0.77659 0.78943 1.18697 1.20669 1.19360 1.17387 0.89531 0.87919 0.93410 1.21141 1.00520 0.98079 0.96995 1.21107 0.97382 0.96348 0.98902 1.21245 1.01496 1.00758 0.91999 1.21084 0.98053 0.95081 0.99661 1.20841 0.97465 0.97750 0.95296 1.68313 1.09059 1.32519 1.12551 0.88099 0.89844 0.87274 0.75060 0.79647 0.87576 0.87751 0.91606 0.88110 0.83989 0.83238 0.84523 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 10.31 71.24 0.73 -0.79 16 2 C 0.30 7.45 7.64 138.79 1.06 8.51 16 3 N -0.50 -10.09 10.32 -187.87 -1.94 -12.03 16 4 C 0.17 2.47 11.31 84.78 0.96 3.43 16 5 C -0.16 -3.08 9.72 22.72 0.22 -2.86 16 6 C 0.13 3.74 6.79 41.96 0.28 4.02 16 7 C 0.52 18.40 7.97 70.52 0.56 18.96 16 8 O -0.50 -17.87 16.21 20.20 0.33 -17.54 16 9 O -0.33 -13.88 9.61 -49.08 -0.47 -14.35 16 10 C 0.08 3.48 4.50 71.24 0.32 3.80 16 11 C 0.45 23.12 7.66 87.66 0.67 23.79 16 12 O -0.61 -35.08 16.48 15.78 0.26 -34.82 16 13 N -0.41 -21.34 2.66 -458.89 -1.22 -22.56 16 14 C -0.39 -19.25 9.19 84.02 0.77 -18.48 16 15 H 0.11 5.24 6.46 -2.91 -0.02 5.22 16 16 C 0.01 0.59 5.24 84.91 0.44 1.03 16 17 N -0.86 -43.93 10.34 21.65 0.22 -43.71 16 18 Si 0.99 38.70 29.59 68.60 2.03 40.73 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 20 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 21 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 22 C 0.21 10.60 2.29 38.22 0.09 10.69 16 23 C -0.15 -6.92 9.95 22.41 0.22 -6.70 16 24 C -0.12 -4.60 10.04 22.25 0.22 -4.37 16 25 C -0.14 -4.92 10.04 22.30 0.22 -4.70 16 26 C -0.12 -4.81 10.04 22.25 0.22 -4.59 16 27 C -0.09 -4.57 8.66 22.41 0.19 -4.38 16 28 N -0.51 -15.90 10.15 -177.13 -1.80 -17.70 16 29 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.23 0.84 8.06 -2.91 -0.02 0.82 16 33 H 0.19 2.70 7.74 -2.91 -0.02 2.68 16 34 H 0.11 4.21 7.52 -2.39 -0.02 4.19 16 35 H 0.10 4.29 8.13 -2.38 -0.02 4.27 16 36 H 0.27 13.36 8.32 -92.71 -0.77 12.59 16 37 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 38 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 40 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 41 H 0.08 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -73.23 368.95 5.69 -67.54 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 1.07 Total: 27.07 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: 7.21 Total: 27.36 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -4.73 Total: -95.99 kcal Atomic # 8 Polarization: -66.83 SS G_CDS: 0.12 Total: -66.71 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -73.23 5.69 -67.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061789874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.175 kcal (2) G-P(sol) polarization free energy of solvation -73.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds