Wall clock time and date at job start Sat Apr 11 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47372 * 2 1 4 4 N 1.31988 * 122.71669 * 269.96048 * 3 2 1 5 5 C 1.29623 * 116.91693 * 180.02562 * 4 3 2 6 6 N 1.39004 * 124.94829 * 180.02562 * 5 4 3 7 7 C 1.34772 * 120.00260 * 180.02562 * 6 5 4 8 8 O 1.21273 * 120.00408 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99847 * 179.97438 * 7 6 5 10 10 N 1.46493 * 109.46924 * 180.02562 * 9 7 6 11 11 C 1.36937 * 120.00184 * 269.99759 * 10 9 7 12 12 H 1.07994 * 120.00291 * 188.16533 * 11 10 9 13 13 C 1.38816 * 119.99808 * 8.16456 * 11 10 9 14 14 N 1.31617 * 120.00048 * 26.15639 * 13 11 10 15 15 Si 1.86799 * 119.99958 * 206.15908 * 13 11 10 16 16 H 1.48505 * 109.47220 * 90.00206 * 15 13 11 17 17 H 1.48500 * 109.47066 * 209.99662 * 15 13 11 18 18 H 1.48494 * 109.47462 * 330.00152 * 15 13 11 19 19 C 1.46505 * 120.00272 * 90.00088 * 10 9 7 20 20 C 1.50703 * 109.46867 * 89.72564 * 19 10 9 21 21 O 1.20825 * 120.00381 * 0.02562 * 20 19 10 22 22 O 1.34235 * 119.99846 * 180.02562 * 20 19 10 23 23 C 1.45192 * 116.99955 * 179.97438 * 22 20 19 24 24 S 1.70973 * 110.11007 * 359.73048 * 5 4 3 25 25 C 1.33447 * 122.71209 * 90.00442 * 3 2 1 26 26 C 1.50696 * 125.97032 * 359.96123 * 25 3 2 27 27 H 1.09002 * 109.47054 * 300.00019 * 1 2 3 28 28 H 1.09002 * 109.47342 * 59.99655 * 1 2 3 29 29 H 1.08997 * 109.47209 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47054 * 239.99981 * 2 1 3 31 31 H 1.09002 * 109.47342 * 120.00345 * 2 1 3 32 32 H 0.97001 * 119.99139 * 359.97438 * 6 5 4 33 33 H 1.09002 * 109.46957 * 300.00230 * 9 7 6 34 34 H 1.08997 * 109.46865 * 59.99709 * 9 7 6 35 35 H 0.96994 * 120.00184 * 180.02562 * 14 13 11 36 36 H 1.08988 * 109.47142 * 209.72354 * 19 10 9 37 37 H 1.09002 * 109.46614 * 329.72819 * 19 10 9 38 38 H 1.08997 * 109.47564 * 59.99859 * 23 22 20 39 39 H 1.09011 * 109.47058 * 180.02562 * 23 22 20 40 40 H 1.08999 * 109.47137 * 299.99482 * 23 22 20 41 41 H 1.08998 * 109.47082 * 90.00586 * 26 25 3 42 42 H 1.08995 * 109.47053 * 330.00203 * 26 25 3 43 43 H 1.09007 * 109.47219 * 210.00247 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2709 2.0931 -1.1105 5 6 2.7012 3.3088 -0.9795 6 7 3.0040 4.1641 -2.0326 7 6 3.4463 5.4121 -1.7813 8 8 3.5797 5.7892 -0.6364 9 6 3.7750 6.3392 -2.9231 10 7 4.2316 7.6256 -2.3915 11 6 3.3274 8.6235 -2.1430 12 1 3.6730 9.6117 -1.8779 13 6 1.9665 8.3649 -2.2318 14 7 1.5148 7.1436 -2.0402 15 14 0.7761 9.7502 -2.6232 16 1 0.6004 9.8510 -4.0944 17 1 -0.5359 9.4703 -1.9862 18 1 1.3172 11.0304 -2.1005 19 6 5.6556 7.8447 -2.1259 20 6 6.3174 8.3995 -3.3610 21 8 5.6664 8.5925 -4.3604 22 8 7.6303 8.6791 -3.3509 23 6 8.2006 9.2102 -4.5760 24 16 2.8344 3.7099 0.6772 25 6 2.2728 2.1007 1.1228 26 6 2.0895 1.5844 2.5267 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.8975 3.8623 -2.9483 33 1 4.5631 5.8983 -3.5336 34 1 2.8855 6.4930 -3.5338 35 1 0.5639 6.9627 -2.1026 36 1 5.7673 8.5527 -1.3048 37 1 6.1246 6.8984 -1.8563 38 1 7.7038 10.1459 -4.8323 39 1 9.2658 9.3914 -4.4321 40 1 8.0605 8.4914 -5.3833 41 1 3.0140 1.1169 2.8655 42 1 1.2843 0.8500 2.5414 43 1 1.8377 2.4131 3.1886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080896539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:20 Heat of formation + Delta-G solvation = -45.223968 kcal Electronic energy + Delta-G solvation = -27699.724823 eV Core-core repulsion = 23680.462277 eV Total energy + Delta-G solvation = -4019.262546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -39.83749 -39.66358 -38.77513 -36.24088 -35.23661 -34.46135 -32.71341 -31.63902 -31.17720 -28.88950 -27.61890 -26.27152 -25.95631 -23.79062 -23.18936 -22.11523 -20.59621 -20.06169 -18.86748 -17.44603 -17.17166 -17.00145 -16.29845 -16.03907 -15.82303 -15.61932 -15.21218 -14.89230 -14.26816 -13.95808 -13.78836 -13.66351 -13.42378 -13.26414 -12.85269 -12.81265 -12.69771 -12.63723 -12.21513 -12.14890 -11.74740 -11.71263 -11.54792 -11.19333 -11.00052 -10.94562 -10.67611 -10.50001 -10.34659 -10.25439 -10.07884 -9.93340 -9.88056 -9.18313 -9.12867 -8.60969 -8.52417 -7.49754 -7.36407 -6.10361 -3.35335 1.33578 1.75723 2.46313 2.92599 3.10453 3.14396 3.31650 3.40788 3.41785 3.49707 3.88127 4.35113 4.84293 5.05952 5.14905 5.16328 5.32830 5.34104 5.39947 5.42796 5.48199 5.49665 5.56850 5.69427 5.76400 5.81659 5.88824 5.90015 5.98727 5.99766 6.07943 6.22555 6.28308 6.35037 6.53975 6.77970 6.94112 6.96802 7.52324 7.68861 7.93037 8.39166 8.47251 8.82036 9.00057 9.49236 9.87289 11.01350 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012777 B = 0.003359 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.906349 B = 8333.948675 C = 9601.499447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C 0.089 3.911 4 N -0.536 5.536 5 C 0.272 3.728 6 N -0.633 5.633 7 C 0.525 3.475 8 O -0.487 6.487 9 C 0.171 3.829 10 N -0.541 5.541 11 C -0.256 4.256 12 H 0.083 0.917 13 C 0.011 3.989 14 N -0.898 5.898 15 Si 0.909 3.091 16 H -0.286 1.286 17 H -0.292 1.292 18 H -0.279 1.279 19 C 0.159 3.841 20 C 0.420 3.580 21 O -0.495 6.495 22 O -0.375 6.375 23 C 0.035 3.965 24 S 0.240 5.760 25 C -0.318 4.318 26 C -0.060 4.060 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.412 0.588 33 H 0.051 0.949 34 H 0.117 0.883 35 H 0.259 0.741 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.690 -9.511 2.485 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 C -0.044 4.044 4 N -0.260 5.260 5 C -0.095 4.095 6 N -0.284 5.284 7 C 0.311 3.689 8 O -0.357 6.357 9 C 0.040 3.960 10 N -0.257 5.257 11 C -0.384 4.384 12 H 0.101 0.899 13 C -0.187 4.187 14 N -0.542 5.542 15 Si 0.739 3.261 16 H -0.212 1.212 17 H -0.219 1.219 18 H -0.204 1.204 19 C 0.027 3.973 20 C 0.258 3.742 21 O -0.380 6.380 22 O -0.292 6.292 23 C -0.060 4.060 24 S 0.492 5.508 25 C -0.441 4.441 26 C -0.119 4.119 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.249 0.751 33 H 0.069 0.931 34 H 0.134 0.866 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.701 -8.286 2.917 10.472 hybrid contribution -1.251 -0.192 -1.166 1.721 sum 4.450 -8.478 1.751 9.733 Atomic orbital electron populations 1.21695 0.94835 1.01241 1.02365 1.20018 0.95805 0.90098 1.02498 1.19506 1.01282 0.97362 0.86226 1.66206 1.22280 1.05318 1.32216 1.23499 0.99466 0.91325 0.95230 1.43653 1.64861 1.12629 1.07231 1.22878 0.73788 0.78344 0.93874 1.90451 1.50893 1.71505 1.22901 1.20667 1.00316 0.83843 0.91194 1.43496 0.99813 1.10729 1.71697 1.19204 0.86374 0.89740 1.43072 0.89914 1.24667 0.96791 0.96818 1.00440 1.69815 1.13964 1.19843 1.50562 0.86178 0.79968 0.81581 0.78422 1.21248 1.21874 1.20403 1.20394 0.85206 1.00859 0.90798 1.26737 0.79304 0.75071 0.93042 1.90604 1.64081 1.48320 1.34965 1.86600 1.27190 1.76003 1.39393 1.23068 0.98098 0.98791 0.86012 1.85050 1.61451 1.07331 0.97011 1.26076 1.16101 1.01685 1.00197 1.19997 1.01562 1.00401 0.89976 0.92726 0.92399 0.92542 0.90773 0.90806 0.75132 0.93110 0.86579 0.93010 0.88322 0.89732 0.92555 0.89136 0.92670 0.91746 0.91387 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 37.15 0.37 -1.26 16 2 C -0.04 -0.55 5.86 -27.89 -0.16 -0.71 16 3 C 0.09 1.44 5.99 -84.20 -0.50 0.94 16 4 N -0.54 -9.89 10.58 -11.27 -0.12 -10.01 16 5 C 0.27 5.28 8.19 -87.35 -0.72 4.56 16 6 N -0.63 -11.95 5.40 -13.07 -0.07 -12.02 16 7 C 0.52 11.17 5.87 -10.99 -0.06 11.10 16 8 O -0.49 -11.66 13.62 5.56 0.08 -11.59 16 9 C 0.17 3.61 5.43 -5.20 -0.03 3.58 16 10 N -0.54 -12.32 1.51 -175.99 -0.27 -12.59 16 11 C -0.26 -6.55 9.69 -15.06 -0.15 -6.69 16 12 H 0.08 2.11 7.95 -52.49 -0.42 1.70 16 13 C 0.01 0.28 4.87 -17.43 -0.08 0.20 16 14 N -0.90 -23.57 9.03 55.49 0.50 -23.07 16 15 Si 0.91 21.23 29.63 -169.99 -5.04 16.19 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.16 3.00 6.26 -5.19 -0.03 2.97 16 20 C 0.42 7.87 8.03 36.01 0.29 8.16 16 21 O -0.49 -10.85 16.18 -18.75 -0.30 -11.15 16 22 O -0.37 -5.99 10.57 -39.27 -0.41 -6.40 16 23 C 0.03 0.44 10.55 101.05 1.07 1.51 16 24 S 0.24 4.48 20.22 -107.50 -2.17 2.31 16 25 C -0.32 -5.02 6.58 -35.99 -0.24 -5.26 16 26 C -0.06 -0.71 9.80 36.00 0.35 -0.36 16 27 H 0.05 0.61 7.98 -51.93 -0.41 0.20 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.76 7.34 -51.93 -0.38 0.38 16 32 H 0.41 6.71 8.82 -40.82 -0.36 6.35 16 33 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.12 2.69 6.32 -51.93 -0.33 2.36 16 35 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.10 1.79 8.04 -51.94 -0.42 1.37 16 37 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 38 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 39 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 40 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.69 7.25 -51.93 -0.38 0.31 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -31.74 378.33 -8.05 -39.79 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.05 Total: 4.10 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 0.10 Total: 18.75 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.05 Total: -57.69 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.64 Total: -29.14 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.04 Total: 16.19 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -2.17 Total: 2.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.74 -8.05 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.431 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds