Wall clock time and date at job start Sat Apr 11 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30125 * 126.69965 * 2 1 4 4 O 1.20893 * 111.97926 * 179.97438 * 3 2 1 5 5 C 1.34638 * 111.46637 * 0.02562 * 4 3 2 6 6 C 1.47509 * 126.94104 * 180.02562 * 5 4 3 7 7 O 1.21589 * 120.00037 * 179.97438 * 6 5 4 8 8 N 1.34779 * 120.00228 * 359.97438 * 6 5 4 9 9 C 1.46499 * 120.00121 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47026 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.46860 * 294.99727 * 10 9 8 12 12 C 1.52997 * 109.46807 * 174.99942 * 10 9 8 13 13 N 1.46499 * 109.47253 * 55.00020 * 10 9 8 14 14 C 1.34767 * 120.00125 * 205.00089 * 13 10 9 15 15 O 1.21284 * 119.99886 * 359.97438 * 14 13 10 16 16 C 1.50699 * 120.00417 * 180.02562 * 14 13 10 17 17 S 1.80997 * 109.47448 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99939 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00509 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99840 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00508 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99896 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46921 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.46850 * 119.99802 * 22 20 18 25 25 H 1.48492 * 109.47051 * 239.99919 * 22 20 18 26 26 C 1.36816 * 106.11492 * 359.97438 * 5 4 3 27 27 C 1.50704 * 128.07856 * 179.97438 * 26 5 4 28 28 H 1.08994 * 109.47611 * 90.02371 * 1 2 3 29 29 H 1.09004 * 109.46729 * 210.02095 * 1 2 3 30 30 H 1.08999 * 109.47413 * 330.01664 * 1 2 3 31 31 H 0.97004 * 119.99645 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47211 * 299.99938 * 9 8 6 33 33 H 1.08998 * 109.47432 * 59.99952 * 9 8 6 34 34 H 1.09004 * 109.47370 * 60.00056 * 12 10 9 35 35 H 1.09005 * 109.46864 * 179.97438 * 12 10 9 36 36 H 1.09003 * 109.47807 * 299.99921 * 12 10 9 37 37 H 0.97006 * 119.99627 * 25.00348 * 13 10 9 38 38 H 1.08999 * 109.46884 * 299.99987 * 16 14 13 39 39 H 1.09005 * 109.47043 * 59.99594 * 16 14 13 40 40 H 0.96998 * 120.00690 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.47069 * 89.99684 * 27 26 5 42 42 H 1.08998 * 109.46973 * 209.99541 * 27 26 5 43 43 H 1.08998 * 109.47006 * 329.99817 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0433 0.0000 4 8 3.4539 0.7361 0.0005 5 6 3.6121 -0.6009 0.0004 6 6 4.8870 -1.3428 0.0014 7 8 4.8829 -2.5587 0.0016 8 7 6.0565 -0.6730 0.0021 9 6 7.3227 -1.4098 0.0036 10 6 8.4891 -0.4195 0.0035 11 1 8.4856 0.1458 -0.9284 12 6 9.8078 -1.1848 0.1309 13 7 8.3478 0.5016 1.1339 14 6 8.9128 1.7240 1.0818 15 8 9.5386 2.0614 0.0992 16 6 8.7680 2.6713 2.2449 17 16 9.6302 4.2188 1.8736 18 6 9.3075 5.1124 3.3575 19 1 8.7256 4.6581 4.1459 20 6 9.8002 6.4007 3.5129 21 7 10.5089 6.9547 2.5520 22 14 9.4574 7.3484 5.0858 23 1 8.6439 6.5093 6.0019 24 1 10.7423 7.6975 5.7433 25 1 8.7130 8.5919 4.7623 26 6 2.3514 -1.1325 0.0003 27 6 1.9558 -2.5867 -0.0004 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5136 31 1 6.0598 0.2971 0.0015 32 1 7.3775 -2.0361 0.8940 33 1 7.3792 -2.0372 -0.8859 34 1 9.9129 -1.8701 -0.7102 35 1 10.6387 -0.4793 0.1303 36 1 9.8114 -1.7502 1.0628 37 1 7.8476 0.2315 1.9200 38 1 7.7115 2.8766 2.4168 39 1 9.2002 2.2192 3.1377 40 1 10.8529 7.8551 2.6604 41 1 1.8606 -2.9378 1.0270 42 1 1.0015 -2.7033 -0.5141 43 1 2.7191 -3.1706 -0.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747435653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:42 Heat of formation + Delta-G solvation = -23.446366 kcal Electronic energy + Delta-G solvation = -26525.842652 eV Core-core repulsion = 22507.524454 eV Total energy + Delta-G solvation = -4018.318198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.34735 -40.25468 -39.30542 -36.60855 -35.77365 -34.02481 -33.00638 -32.44270 -31.53338 -29.36576 -28.74911 -28.57429 -26.80218 -25.50007 -23.55422 -22.19359 -21.85394 -20.50671 -20.40666 -18.59038 -18.16510 -17.85106 -16.83311 -16.65495 -16.28232 -15.89593 -15.35117 -14.98536 -14.81625 -14.64813 -14.19384 -14.08940 -13.97791 -13.49804 -13.42990 -13.34373 -13.25741 -13.16569 -12.99442 -12.86360 -12.79134 -12.58948 -12.11429 -11.89242 -11.47619 -11.23955 -11.07926 -11.03469 -10.76682 -10.68754 -10.28675 -9.91331 -9.82405 -9.57667 -9.43436 -9.11149 -9.05164 -8.25832 -6.51890 -6.23291 -3.93857 0.43112 1.66063 2.23131 2.58381 2.80318 2.96828 3.02095 3.20926 3.27105 3.31473 3.64769 3.66523 4.04491 4.18859 4.27850 4.37103 4.52021 4.81074 4.82868 5.02732 5.03705 5.09075 5.12283 5.12752 5.21333 5.23509 5.25971 5.34083 5.41110 5.49599 5.53403 5.61446 5.76792 5.84562 5.86492 5.87355 6.10193 6.11619 6.51059 6.88347 7.53250 7.57719 7.59546 7.77132 8.34052 8.51730 9.22480 10.84161 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010702 B = 0.002547 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.635557 B =10990.445151 C =13110.578752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.007 3.993 3 N -0.337 5.337 4 O 0.122 5.878 5 C -0.097 4.097 6 C 0.609 3.391 7 O -0.513 6.513 8 N -0.713 5.713 9 C 0.113 3.887 10 C 0.131 3.869 11 H 0.098 0.902 12 C -0.161 4.161 13 N -0.739 5.739 14 C 0.534 3.466 15 O -0.513 6.513 16 C -0.155 4.155 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.115 4.115 27 C -0.085 4.085 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.413 0.587 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.432 -21.559 -4.953 27.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.151 4.151 3 N -0.037 5.037 4 O 0.048 5.952 5 C -0.163 4.163 6 C 0.393 3.607 7 O -0.389 6.389 8 N -0.365 5.365 9 C -0.011 4.011 10 C 0.025 3.975 11 H 0.116 0.884 12 C -0.220 4.220 13 N -0.395 5.395 14 C 0.321 3.679 15 O -0.387 6.387 16 C -0.305 4.305 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.120 4.120 27 C -0.142 4.142 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.249 0.751 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.500 -20.401 -6.672 26.476 hybrid contribution -1.186 -0.035 2.568 2.829 sum -16.686 -20.437 -4.104 26.701 Atomic orbital electron populations 1.20204 0.85228 1.04179 1.03697 1.23558 0.99360 0.88006 1.04192 1.73788 0.89240 1.24115 1.16522 1.85010 1.21392 1.21713 1.67063 1.23895 0.96853 0.84192 1.11358 1.16441 0.80998 0.86095 0.77158 1.90848 1.86070 1.11741 1.50214 1.45901 1.05201 1.11485 1.73929 1.21850 0.80907 0.94396 1.03953 1.21152 0.93911 0.90399 0.91988 0.88449 1.22115 0.97044 1.00603 1.02226 1.46164 1.57649 1.15465 1.20180 1.20337 0.77870 0.81123 0.88614 1.90714 1.39174 1.75550 1.33219 1.23544 1.05953 1.02197 0.98845 1.85390 1.67999 1.04422 1.25466 1.22899 1.39814 1.02426 1.03156 0.90886 1.24992 0.94539 0.96565 0.97491 1.70018 1.33163 1.15052 1.32041 0.86120 0.78197 0.79452 0.81756 1.19615 1.20565 1.20559 1.21480 0.90243 0.98583 1.01704 1.20332 1.02645 0.87782 1.03453 0.89876 0.89742 0.90091 0.75087 0.90124 0.89330 0.91432 0.90911 0.92115 0.76693 0.89164 0.89191 0.92221 0.90114 0.90741 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.39 36.01 0.37 -0.07 16 2 C 0.01 0.07 7.31 -82.17 -0.60 -0.54 16 3 N -0.34 -4.06 12.04 33.52 0.40 -3.65 16 4 O 0.12 1.42 11.04 15.56 0.17 1.59 16 5 C -0.10 -1.02 7.29 -36.32 -0.26 -1.29 16 6 C 0.61 6.26 7.82 -12.48 -0.10 6.16 16 7 O -0.51 -6.12 15.12 5.29 0.08 -6.04 16 8 N -0.71 -6.27 5.38 -61.36 -0.33 -6.60 16 9 C 0.11 0.87 5.23 -4.04 -0.02 0.85 16 10 C 0.13 1.26 2.73 -67.93 -0.19 1.07 16 11 H 0.10 1.10 7.58 -51.93 -0.39 0.70 16 12 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 13 N -0.74 -8.43 4.52 -53.81 -0.24 -8.67 16 14 C 0.53 9.06 7.81 -10.99 -0.09 8.98 16 15 O -0.51 -10.74 15.52 5.55 0.09 -10.65 16 16 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 17 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 18 C -0.53 -15.05 9.50 30.94 0.29 -14.76 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 22 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.12 -1.09 6.36 -103.99 -0.66 -1.75 16 27 C -0.09 -0.59 9.86 36.01 0.36 -0.24 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.41 3.66 7.96 -40.82 -0.33 3.34 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.40 3.65 8.60 -40.82 -0.35 3.29 16 38 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 39 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.73 6.73 -51.93 -0.35 0.38 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -35.51 388.43 -6.93 -42.45 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.04 Total: 1.89 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -0.42 Total: -3.45 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.56 Total: -44.17 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.34 Total: -15.10 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.51 -6.93 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747435653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.000 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds