Wall clock time and date at job start Sat Apr 11 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30125 * 126.69965 * 2 1 4 4 O 1.20893 * 111.97926 * 179.97438 * 3 2 1 5 5 C 1.34638 * 111.46637 * 0.02562 * 4 3 2 6 6 C 1.47509 * 126.94104 * 180.02562 * 5 4 3 7 7 O 1.21589 * 120.00037 * 179.97438 * 6 5 4 8 8 N 1.34779 * 120.00228 * 359.97438 * 6 5 4 9 9 C 1.46499 * 120.00121 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47026 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.46860 * 294.99727 * 10 9 8 12 12 C 1.52997 * 109.46807 * 174.99942 * 10 9 8 13 13 N 1.46499 * 109.47253 * 55.00020 * 10 9 8 14 14 C 1.34767 * 120.00125 * 205.00089 * 13 10 9 15 15 O 1.21284 * 119.99886 * 359.97438 * 14 13 10 16 16 C 1.50699 * 120.00417 * 180.02562 * 14 13 10 17 17 S 1.80997 * 109.47448 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99939 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00509 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99840 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00508 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99896 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46921 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.46850 * 119.99802 * 22 20 18 25 25 H 1.48492 * 109.47051 * 239.99919 * 22 20 18 26 26 C 1.36816 * 106.11492 * 359.97438 * 5 4 3 27 27 C 1.50704 * 128.07856 * 179.97438 * 26 5 4 28 28 H 1.08994 * 109.47611 * 90.02371 * 1 2 3 29 29 H 1.09004 * 109.46729 * 210.02095 * 1 2 3 30 30 H 1.08999 * 109.47413 * 330.01664 * 1 2 3 31 31 H 0.97004 * 119.99645 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47211 * 299.99938 * 9 8 6 33 33 H 1.08998 * 109.47432 * 59.99952 * 9 8 6 34 34 H 1.09004 * 109.47370 * 60.00056 * 12 10 9 35 35 H 1.09005 * 109.46864 * 179.97438 * 12 10 9 36 36 H 1.09003 * 109.47807 * 299.99921 * 12 10 9 37 37 H 0.97006 * 119.99627 * 25.00348 * 13 10 9 38 38 H 1.08999 * 109.46884 * 299.99987 * 16 14 13 39 39 H 1.09005 * 109.47043 * 59.99594 * 16 14 13 40 40 H 0.96998 * 120.00690 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.47069 * 89.99684 * 27 26 5 42 42 H 1.08998 * 109.46973 * 209.99541 * 27 26 5 43 43 H 1.08998 * 109.47006 * 329.99817 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0433 0.0000 4 8 3.4539 0.7361 0.0005 5 6 3.6121 -0.6009 0.0004 6 6 4.8870 -1.3428 0.0014 7 8 4.8829 -2.5587 0.0016 8 7 6.0565 -0.6730 0.0021 9 6 7.3227 -1.4098 0.0036 10 6 8.4891 -0.4195 0.0035 11 1 8.4856 0.1458 -0.9284 12 6 9.8078 -1.1848 0.1309 13 7 8.3478 0.5016 1.1339 14 6 8.9128 1.7240 1.0818 15 8 9.5386 2.0614 0.0992 16 6 8.7680 2.6713 2.2449 17 16 9.6302 4.2188 1.8736 18 6 9.3075 5.1124 3.3575 19 1 8.7256 4.6581 4.1459 20 6 9.8002 6.4007 3.5129 21 7 10.5089 6.9547 2.5520 22 14 9.4574 7.3484 5.0858 23 1 8.6439 6.5093 6.0019 24 1 10.7423 7.6975 5.7433 25 1 8.7130 8.5919 4.7623 26 6 2.3514 -1.1325 0.0003 27 6 1.9558 -2.5867 -0.0004 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5136 31 1 6.0598 0.2971 0.0015 32 1 7.3775 -2.0361 0.8940 33 1 7.3792 -2.0372 -0.8859 34 1 9.9129 -1.8701 -0.7102 35 1 10.6387 -0.4793 0.1303 36 1 9.8114 -1.7502 1.0628 37 1 7.8476 0.2315 1.9200 38 1 7.7115 2.8766 2.4168 39 1 9.2002 2.2192 3.1377 40 1 10.8529 7.8551 2.6604 41 1 1.8606 -2.9378 1.0270 42 1 1.0015 -2.7033 -0.5141 43 1 2.7191 -3.1706 -0.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747435653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:41 Heat of formation + Delta-G solvation = -49.544205 kcal Electronic energy + Delta-G solvation = -26526.974339 eV Core-core repulsion = 22507.524454 eV Total energy + Delta-G solvation = -4019.449886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.11148 -41.17549 -40.46604 -37.59062 -36.49917 -34.95247 -34.58301 -33.76318 -32.64432 -30.12288 -29.86388 -29.29850 -27.65951 -27.51755 -24.32966 -22.97318 -22.75124 -21.62933 -21.23452 -19.89994 -19.25876 -18.95785 -17.97262 -17.72953 -17.13452 -16.88638 -16.82029 -16.37260 -16.31236 -15.81545 -15.47006 -14.79228 -14.71223 -14.59422 -14.48240 -14.09957 -14.03924 -14.02523 -13.89861 -13.79006 -13.62329 -13.28758 -13.23012 -13.15520 -12.95119 -12.91696 -12.57810 -12.15981 -12.05544 -11.70430 -11.49866 -11.16007 -11.00668 -10.94518 -10.65244 -10.26777 -10.25552 -10.18420 -8.65245 -8.35021 -6.12001 -0.34595 0.94843 1.27058 1.40616 1.45744 1.48884 1.57922 1.62360 1.80005 2.06751 2.25399 2.30234 2.99316 3.02886 3.32050 3.36295 3.51830 3.66305 3.86567 3.98360 4.05991 4.17816 4.24940 4.33706 4.52829 4.56843 4.58571 4.65183 4.68176 4.73377 4.75596 4.76649 4.89147 5.01998 5.03854 5.09803 5.29758 5.34192 5.42283 5.47674 6.10757 6.19957 6.47363 6.75476 7.00909 7.06890 7.24168 8.74280 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010702 B = 0.002547 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.635557 B =10990.445151 C =13110.578752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.010 3.990 3 N -0.370 5.370 4 O 0.103 5.897 5 C -0.113 4.113 6 C 0.613 3.387 7 O -0.529 6.529 8 N -0.709 5.709 9 C 0.121 3.879 10 C 0.134 3.866 11 H 0.081 0.919 12 C -0.157 4.157 13 N -0.712 5.712 14 C 0.540 3.460 15 O -0.558 6.558 16 C -0.132 4.132 17 S -0.148 6.148 18 C -0.545 4.545 19 H 0.081 0.919 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.275 1.275 26 C -0.116 4.116 27 C -0.083 4.083 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.412 0.588 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.415 0.585 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.271 0.729 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.445 -23.694 -3.563 30.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.149 4.149 3 N -0.074 5.074 4 O 0.033 5.967 5 C -0.178 4.178 6 C 0.397 3.603 7 O -0.407 6.407 8 N -0.360 5.360 9 C -0.002 4.002 10 C 0.029 3.971 11 H 0.099 0.901 12 C -0.216 4.216 13 N -0.367 5.367 14 C 0.325 3.675 15 O -0.436 6.436 16 C -0.284 4.284 17 S 0.079 5.921 18 C -0.693 4.693 19 H 0.099 0.901 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.120 4.120 27 C -0.139 4.139 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.098 0.902 31 H 0.248 0.752 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.251 0.749 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.118 0.882 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.510 -22.589 -5.266 29.062 hybrid contribution -0.634 0.480 2.081 2.228 sum -18.144 -22.109 -3.185 28.778 Atomic orbital electron populations 1.20415 0.82684 1.05363 1.04970 1.24193 1.00919 0.87406 1.02334 1.73777 0.89692 1.25528 1.18397 1.84967 1.21502 1.22269 1.67951 1.24096 0.97565 0.84082 1.12059 1.16385 0.81149 0.85812 0.76928 1.90838 1.86298 1.12270 1.51303 1.45911 1.05287 1.11481 1.73314 1.21864 0.79316 0.93627 1.05390 1.21251 0.95438 0.90096 0.90280 0.90104 1.22074 0.95067 1.00213 1.04211 1.45885 1.55849 1.13724 1.21281 1.19948 0.77961 0.82292 0.87255 1.90708 1.41569 1.76719 1.34576 1.23394 1.05804 0.98700 1.00469 1.85539 1.70209 1.09613 1.26761 1.23227 1.39770 1.02962 1.03292 0.90066 1.26102 0.94090 0.97695 1.01272 1.70177 1.34470 1.15581 1.34507 0.84932 0.78326 0.77794 0.77074 1.18115 1.19899 1.20029 1.21902 0.89782 0.99759 1.00584 1.20419 1.03485 0.85784 1.04241 0.88431 0.87303 0.90159 0.75155 0.88579 0.87955 0.89118 0.94016 0.90461 0.74851 0.87373 0.87365 0.92018 0.89116 0.88205 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.39 71.24 0.74 0.00 16 2 C 0.01 0.17 7.31 43.55 0.32 0.49 16 3 N -0.37 -8.88 12.04 -48.87 -0.59 -9.47 16 4 O 0.10 2.43 11.04 65.85 0.73 3.15 16 5 C -0.11 -2.30 7.29 24.38 0.18 -2.12 16 6 C 0.61 11.87 7.82 86.69 0.68 12.55 16 7 O -0.53 -11.78 15.12 -4.00 -0.06 -11.84 16 8 N -0.71 -11.46 5.38 -466.29 -2.51 -13.97 16 9 C 0.12 1.59 5.23 86.38 0.45 2.04 16 10 C 0.13 2.38 2.73 44.99 0.12 2.50 16 11 H 0.08 1.79 7.58 -2.39 -0.02 1.77 16 12 C -0.16 -2.58 9.48 71.98 0.68 -1.90 16 13 N -0.71 -15.23 4.52 -442.55 -2.00 -17.23 16 14 C 0.54 18.21 7.81 87.66 0.68 18.89 16 15 O -0.56 -24.03 15.52 -3.04 -0.05 -24.08 16 16 C -0.13 -5.02 6.16 71.24 0.44 -4.59 16 17 S -0.15 -8.10 20.57 -56.49 -1.16 -9.26 16 18 C -0.54 -30.92 9.50 67.95 0.65 -30.28 16 19 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 20 C 0.01 0.75 5.49 84.86 0.47 1.21 16 21 N -0.91 -55.85 13.22 21.65 0.29 -55.56 16 22 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 C -0.12 -2.02 6.36 -19.45 -0.12 -2.14 16 27 C -0.08 -0.96 9.86 71.24 0.70 -0.26 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.41 6.98 7.96 -92.71 -0.74 6.24 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.41 6.54 8.60 -92.70 -0.80 5.74 16 38 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 39 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.08 1.14 6.73 -2.39 -0.02 1.13 16 Total: -1.00 -80.29 388.43 2.18 -78.11 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -0.48 Total: 18.02 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 5.99 Total: -3.59 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -4.81 Total: -96.23 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: 0.62 Total: -32.77 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -80.29 2.18 -78.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747435653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.563 kcal (2) G-P(sol) polarization free energy of solvation -80.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds