Wall clock time and date at job start Sat Apr 11 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99763 * 2 1 4 4 H 1.48495 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47102 * 300.00506 * 3 2 1 6 6 H 1.48508 * 109.46938 * 59.99995 * 3 2 1 7 7 C 1.38798 * 120.00589 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00056 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99650 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00268 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47407 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00096 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99838 * 180.02562 * 11 10 9 14 14 C 1.46506 * 120.00072 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47289 * 180.02562 * 14 13 11 16 16 H 1.08995 * 115.51688 * 29.41434 * 15 14 13 17 17 C 1.53001 * 117.44134 * 243.99937 * 15 14 13 18 18 H 1.09007 * 119.53956 * 4.12162 * 17 15 14 19 19 C 1.54438 * 118.09125 * 160.74071 * 17 15 14 20 20 N 1.48142 * 104.55805 * 87.29747 * 19 17 15 21 21 C 1.34782 * 127.84218 * 140.40102 * 20 19 17 22 22 O 1.21272 * 119.99882 * 179.97438 * 21 20 19 23 23 C 1.50700 * 119.99453 * 0.02562 * 21 20 19 24 24 C 1.50699 * 109.46640 * 180.02562 * 23 21 20 25 25 N 1.34776 * 120.00161 * 179.97438 * 24 23 21 26 26 O 1.21281 * 120.00074 * 359.97438 * 24 23 21 27 27 C 1.48151 * 104.32269 * 320.40120 * 20 19 17 28 28 C 1.52999 * 117.44415 * 174.83510 * 15 14 13 29 29 H 1.09002 * 119.53774 * 354.27898 * 28 15 14 30 30 H 0.96997 * 120.00713 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46878 * 59.99938 * 10 9 7 32 32 H 1.09001 * 109.47320 * 300.00410 * 10 9 7 33 33 H 0.97001 * 120.00676 * 359.97438 * 13 11 10 34 34 H 1.09001 * 109.47060 * 300.00359 * 14 13 11 35 35 H 1.09004 * 109.47073 * 59.99848 * 14 13 11 36 36 H 1.08994 * 110.44737 * 328.52641 * 19 17 15 37 37 H 1.09000 * 110.52180 * 206.10381 * 19 17 15 38 38 H 1.08999 * 109.47229 * 299.99257 * 23 21 20 39 39 H 1.08998 * 109.47179 * 60.00033 * 23 21 20 40 40 H 0.97011 * 119.99492 * 359.97438 * 25 24 23 41 41 H 0.96997 * 120.00262 * 180.02562 * 25 24 23 42 42 H 1.09001 * 110.40610 * 280.80250 * 27 20 19 43 43 H 1.08998 * 110.50939 * 158.42248 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3026 0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8444 -6.3430 0.0007 14 6 2.3308 -7.7150 0.0008 15 6 3.5028 -8.6984 0.0022 16 1 4.4128 -8.3436 0.4860 17 6 3.6615 -9.6081 -1.2178 18 1 2.9910 -9.4876 -2.0688 19 6 5.0377 -10.2655 -1.4606 20 7 4.9944 -11.5209 -0.6753 21 6 5.4800 -12.7297 -1.0211 22 8 5.3661 -13.6686 -0.2621 23 6 6.1654 -12.9141 -2.3505 24 6 6.6113 -14.3467 -2.4912 25 7 7.2512 -14.7468 -3.6079 26 8 6.3942 -15.1397 -1.5996 27 6 4.2964 -11.1462 0.5766 28 6 3.1737 -10.1876 0.1247 29 1 2.1436 -10.4976 0.3001 30 1 -0.4851 0.8400 0.0004 31 1 3.1246 -3.7312 0.8895 32 1 3.1247 -3.7313 -0.8905 33 1 3.8012 -6.1834 0.0004 34 1 1.7217 -7.8749 0.8905 35 1 1.7225 -7.8753 -0.8895 36 1 5.8375 -9.6189 -1.0999 37 1 5.1751 -10.4842 -2.5196 38 1 5.4711 -12.6695 -3.1543 39 1 7.0326 -12.2561 -2.4065 40 1 7.4244 -14.1125 -4.3212 41 1 7.5378 -15.6690 -3.6986 42 1 4.9805 -10.6371 1.2555 43 1 3.8726 -12.0284 1.0563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756192273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:58 Heat of formation + Delta-G solvation = -69.344644 kcal Electronic energy + Delta-G solvation = -25490.088158 eV Core-core repulsion = 21469.779661 eV Total energy + Delta-G solvation = -4020.308497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.10704 -40.04748 -39.10316 -38.22164 -35.21653 -34.16176 -33.48831 -32.45247 -31.17525 -29.80430 -28.89524 -27.34857 -25.53011 -24.62056 -21.88845 -21.26343 -20.77691 -20.21990 -19.72096 -18.08629 -17.87387 -17.74872 -16.66102 -16.60092 -16.26261 -16.05272 -15.64926 -15.44514 -15.14036 -14.82812 -14.64137 -14.15831 -13.95502 -13.94713 -13.74691 -13.49700 -13.14277 -13.05778 -12.65303 -12.58916 -12.47715 -12.03912 -11.85461 -11.77192 -11.09175 -11.04490 -10.79519 -10.74782 -10.55334 -10.41723 -10.15269 -9.85830 -9.82353 -9.44387 -9.19907 -9.10249 -8.93568 -8.25869 -6.52681 -6.24151 -3.94868 2.10571 2.24721 2.29856 2.84825 3.02670 3.06631 3.11527 3.19682 3.26516 3.30654 3.62455 3.84065 4.02449 4.10663 4.17964 4.30826 4.40871 4.54347 4.58096 4.63487 4.71416 4.81759 4.90551 5.03130 5.11234 5.12407 5.23919 5.36111 5.51739 5.54506 5.60817 5.66355 5.68114 5.85712 5.87072 6.10546 6.28162 6.54522 6.77654 7.05311 7.57463 7.64572 7.70723 7.87417 8.32971 8.55994 9.21387 10.83330 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031646 B = 0.001467 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.573627 B =19078.706172 C =19567.910329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.737 5.737 14 C 0.152 3.848 15 C -0.119 4.119 16 H 0.113 0.887 17 C -0.170 4.170 18 H 0.127 0.873 19 C 0.126 3.874 20 N -0.628 5.628 21 C 0.535 3.465 22 O -0.493 6.493 23 C -0.163 4.163 24 C 0.515 3.485 25 N -0.860 5.860 26 O -0.497 6.497 27 C 0.133 3.867 28 C -0.164 4.164 29 H 0.127 0.873 30 H 0.268 0.732 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.399 0.601 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.400 0.600 41 H 0.404 0.596 42 H 0.076 0.924 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.502 -24.715 -8.091 30.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.392 5.392 14 C 0.028 3.972 15 C -0.138 4.138 16 H 0.131 0.869 17 C -0.189 4.189 18 H 0.145 0.855 19 C 0.004 3.996 20 N -0.365 5.365 21 C 0.321 3.679 22 O -0.365 6.365 23 C -0.206 4.206 24 C 0.297 3.703 25 N -0.426 5.426 26 O -0.369 6.369 27 C 0.011 3.989 28 C -0.184 4.184 29 H 0.145 0.855 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.228 0.772 41 H 0.235 0.765 42 H 0.094 0.906 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.086 -26.014 -6.989 30.397 hybrid contribution 2.602 1.493 -0.635 3.067 sum 16.688 -24.522 -7.625 30.626 Atomic orbital electron populations 1.70022 1.05961 1.27380 1.46898 1.24992 0.95017 0.99039 0.94517 0.86118 0.79570 0.81886 0.77917 1.19623 1.20571 1.20556 1.22907 0.94944 0.91631 1.58904 0.90855 1.85417 1.04926 0.96377 1.96719 1.23525 1.06589 0.95307 1.04954 1.20315 0.86494 0.86279 0.75115 1.90712 1.15396 1.85604 1.47437 1.45957 1.10008 1.05167 1.78075 1.20735 0.93731 0.79962 1.02764 1.22641 1.00604 0.90761 0.99801 0.86896 1.23860 0.98263 1.03911 0.92900 0.85545 1.21893 0.95993 0.84895 0.96846 1.49306 1.58726 1.08655 1.19841 1.19545 0.79282 0.81020 0.88035 1.90889 1.55398 1.38254 1.51992 1.21567 1.03627 0.96967 0.98419 1.19969 0.78208 0.89770 0.82343 1.43852 1.62635 1.15678 1.20387 1.90929 1.52766 1.54351 1.38869 1.21738 0.92622 0.98181 0.86314 1.23683 1.00464 0.93250 1.00958 0.85492 0.92213 0.89187 0.89186 0.76713 0.90725 0.91169 0.90271 0.89613 0.85907 0.85931 0.77190 0.76508 0.90581 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.82 13.22 55.49 0.73 -25.08 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.94 6.16 36.00 0.22 -2.72 16 11 C 0.53 9.33 7.85 -10.99 -0.09 9.24 16 12 O -0.52 -11.31 15.86 5.55 0.09 -11.22 16 13 N -0.74 -8.62 5.56 -60.29 -0.33 -8.95 16 14 C 0.15 1.49 5.95 -4.04 -0.02 1.47 16 15 C -0.12 -0.75 5.40 -90.62 -0.49 -1.24 16 16 H 0.11 0.61 8.04 -51.93 -0.42 0.19 16 17 C -0.17 -0.92 6.74 -89.27 -0.60 -1.53 16 18 H 0.13 0.68 8.12 -51.93 -0.42 0.26 16 19 C 0.13 0.53 6.73 -2.38 -0.02 0.51 16 20 N -0.63 -4.45 3.32 -169.28 -0.56 -5.01 16 21 C 0.53 4.94 7.91 -10.98 -0.09 4.85 16 22 O -0.49 -7.24 14.45 -18.95 -0.27 -7.52 16 23 C -0.16 -0.75 5.16 -29.04 -0.15 -0.90 16 24 C 0.51 3.87 8.09 -10.99 -0.09 3.78 16 25 N -0.86 -2.54 8.87 31.22 0.28 -2.26 16 26 O -0.50 -6.83 15.02 -18.96 -0.28 -7.12 16 27 C 0.13 0.96 6.85 -2.41 -0.02 0.95 16 28 C -0.16 -1.05 6.84 -89.30 -0.61 -1.66 16 29 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 32 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 33 H 0.40 3.42 8.40 -40.82 -0.34 3.07 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 0.17 7.30 -51.93 -0.38 -0.21 16 38 H 0.12 0.21 7.95 -51.93 -0.41 -0.21 16 39 H 0.12 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.40 -0.24 8.83 -40.82 -0.36 -0.60 16 41 H 0.40 1.07 8.93 -40.82 -0.36 0.71 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.78 7.88 -51.93 -0.41 0.37 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -41.72 382.91 -9.60 -51.32 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.02 Total: -2.15 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.75 Total: 0.05 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.11 Total: -41.31 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.47 Total: -25.86 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -41.72 -9.60 -51.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756192273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.029 kcal (2) G-P(sol) polarization free energy of solvation -41.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds