Wall clock time and date at job start Sat Apr 11 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99763 * 2 1 4 4 H 1.48495 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47102 * 300.00506 * 3 2 1 6 6 H 1.48508 * 109.46938 * 59.99995 * 3 2 1 7 7 C 1.38798 * 120.00589 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00056 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99650 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00268 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47407 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00096 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99838 * 180.02562 * 11 10 9 14 14 C 1.46506 * 120.00072 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47289 * 180.02562 * 14 13 11 16 16 H 1.08995 * 115.51688 * 29.41434 * 15 14 13 17 17 C 1.53001 * 117.44134 * 243.99937 * 15 14 13 18 18 H 1.09007 * 119.53956 * 4.12162 * 17 15 14 19 19 C 1.54438 * 118.09125 * 160.74071 * 17 15 14 20 20 N 1.48142 * 104.55805 * 87.29747 * 19 17 15 21 21 C 1.34782 * 127.84218 * 140.40102 * 20 19 17 22 22 O 1.21272 * 119.99882 * 179.97438 * 21 20 19 23 23 C 1.50700 * 119.99453 * 0.02562 * 21 20 19 24 24 C 1.50699 * 109.46640 * 180.02562 * 23 21 20 25 25 N 1.34776 * 120.00161 * 179.97438 * 24 23 21 26 26 O 1.21281 * 120.00074 * 359.97438 * 24 23 21 27 27 C 1.48151 * 104.32269 * 320.40120 * 20 19 17 28 28 C 1.52999 * 117.44415 * 174.83510 * 15 14 13 29 29 H 1.09002 * 119.53774 * 354.27898 * 28 15 14 30 30 H 0.96997 * 120.00713 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46878 * 59.99938 * 10 9 7 32 32 H 1.09001 * 109.47320 * 300.00410 * 10 9 7 33 33 H 0.97001 * 120.00676 * 359.97438 * 13 11 10 34 34 H 1.09001 * 109.47060 * 300.00359 * 14 13 11 35 35 H 1.09004 * 109.47073 * 59.99848 * 14 13 11 36 36 H 1.08994 * 110.44737 * 328.52641 * 19 17 15 37 37 H 1.09000 * 110.52180 * 206.10381 * 19 17 15 38 38 H 1.08999 * 109.47229 * 299.99257 * 23 21 20 39 39 H 1.08998 * 109.47179 * 60.00033 * 23 21 20 40 40 H 0.97011 * 119.99492 * 359.97438 * 25 24 23 41 41 H 0.96997 * 120.00262 * 180.02562 * 25 24 23 42 42 H 1.09001 * 110.40610 * 280.80250 * 27 20 19 43 43 H 1.08998 * 110.50939 * 158.42248 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3026 0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8444 -6.3430 0.0007 14 6 2.3308 -7.7150 0.0008 15 6 3.5028 -8.6984 0.0022 16 1 4.4128 -8.3436 0.4860 17 6 3.6615 -9.6081 -1.2178 18 1 2.9910 -9.4876 -2.0688 19 6 5.0377 -10.2655 -1.4606 20 7 4.9944 -11.5209 -0.6753 21 6 5.4800 -12.7297 -1.0211 22 8 5.3661 -13.6686 -0.2621 23 6 6.1654 -12.9141 -2.3505 24 6 6.6113 -14.3467 -2.4912 25 7 7.2512 -14.7468 -3.6079 26 8 6.3942 -15.1397 -1.5996 27 6 4.2964 -11.1462 0.5766 28 6 3.1737 -10.1876 0.1247 29 1 2.1436 -10.4976 0.3001 30 1 -0.4851 0.8400 0.0004 31 1 3.1246 -3.7312 0.8895 32 1 3.1247 -3.7313 -0.8905 33 1 3.8012 -6.1834 0.0004 34 1 1.7217 -7.8749 0.8905 35 1 1.7225 -7.8753 -0.8895 36 1 5.8375 -9.6189 -1.0999 37 1 5.1751 -10.4842 -2.5196 38 1 5.4711 -12.6695 -3.1543 39 1 7.0326 -12.2561 -2.4065 40 1 7.4244 -14.1125 -4.3212 41 1 7.5378 -15.6690 -3.6986 42 1 4.9805 -10.6371 1.2555 43 1 3.8726 -12.0284 1.0563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756192273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:58 Heat of formation + Delta-G solvation = -103.334910 kcal Electronic energy + Delta-G solvation = -25491.562086 eV Core-core repulsion = 21469.779661 eV Total energy + Delta-G solvation = -4021.782426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.67149 -40.75284 -40.26458 -38.93242 -36.15233 -34.71749 -34.56176 -34.31968 -31.74357 -31.05461 -29.33588 -28.25988 -27.57784 -25.36052 -22.39062 -22.02125 -21.50953 -21.11823 -20.23537 -19.78764 -18.56796 -18.13768 -17.80716 -17.43182 -17.04815 -16.87027 -16.84468 -16.60052 -16.13853 -15.93760 -15.75144 -15.34016 -14.92029 -14.60095 -14.52828 -14.46162 -14.24680 -14.21162 -13.58420 -13.39484 -13.13230 -13.08381 -12.93871 -12.89315 -12.62033 -12.47275 -12.40267 -11.68846 -11.34680 -11.20484 -11.13762 -10.99233 -10.83816 -10.58518 -10.49990 -10.23274 -10.04167 -9.76571 -8.63768 -8.32533 -6.10179 1.29797 1.43401 1.49708 1.58201 1.60911 1.65675 1.72437 1.77345 2.22679 2.30208 2.52953 2.73513 3.02027 3.33521 3.35965 3.45952 3.65324 3.82833 4.01951 4.07139 4.14897 4.22375 4.23886 4.35068 4.36243 4.42049 4.49538 4.56503 4.59337 4.73731 4.77129 4.84122 4.99212 5.13140 5.17916 5.25211 5.44834 5.49547 5.95343 6.22493 6.47831 6.56358 6.57435 7.09270 7.16466 7.29802 7.46642 8.76870 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031646 B = 0.001467 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.573627 B =19078.706172 C =19567.910329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.569 6.569 13 N -0.707 5.707 14 C 0.152 3.848 15 C -0.110 4.110 16 H 0.133 0.867 17 C -0.157 4.157 18 H 0.131 0.869 19 C 0.126 3.874 20 N -0.626 5.626 21 C 0.523 3.477 22 O -0.562 6.562 23 C -0.151 4.151 24 C 0.507 3.493 25 N -0.836 5.836 26 O -0.572 6.572 27 C 0.130 3.870 28 C -0.171 4.171 29 H 0.119 0.881 30 H 0.270 0.730 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.419 0.581 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.421 0.579 41 H 0.406 0.594 42 H 0.086 0.914 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.891 -23.654 -10.102 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.448 6.448 13 N -0.362 5.362 14 C 0.029 3.971 15 C -0.129 4.129 16 H 0.151 0.849 17 C -0.176 4.176 18 H 0.149 0.851 19 C 0.004 3.996 20 N -0.361 5.361 21 C 0.312 3.688 22 O -0.439 6.439 23 C -0.193 4.193 24 C 0.291 3.709 25 N -0.402 5.402 26 O -0.450 6.450 27 C 0.008 3.992 28 C -0.191 4.191 29 H 0.137 0.863 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.257 0.743 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.138 0.862 38 H 0.179 0.821 39 H 0.182 0.818 40 H 0.253 0.747 41 H 0.237 0.763 42 H 0.104 0.896 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.558 -24.928 -9.080 31.814 hybrid contribution 1.584 1.051 -0.039 1.901 sum 19.142 -23.877 -9.120 31.932 Atomic orbital electron populations 1.70188 1.08011 1.28501 1.48187 1.26116 0.95921 1.03314 0.93796 0.84912 0.78707 0.76395 0.77969 1.17863 1.20024 1.20143 1.23249 0.95403 0.91963 1.58602 0.89743 1.85618 1.10842 0.99391 1.97054 1.23367 1.03410 0.94224 1.06983 1.20059 0.86189 0.86742 0.75114 1.90704 1.17623 1.86146 1.50285 1.45650 1.10412 1.04687 1.75412 1.20783 0.95126 0.79339 1.01877 1.22432 0.99700 0.89592 1.01137 0.84939 1.23989 0.99144 1.02148 0.92286 0.85077 1.22177 0.95429 0.83436 0.98515 1.49402 1.57584 1.09200 1.19930 1.20423 0.78778 0.80513 0.89085 1.90869 1.58162 1.40546 1.54309 1.21643 1.05497 0.95601 0.96526 1.20575 0.77616 0.90601 0.82157 1.43688 1.60554 1.16335 1.19614 1.90911 1.55998 1.56436 1.41659 1.21711 0.93142 0.97384 0.86999 1.23551 0.99892 0.93109 1.02544 0.86310 0.92059 0.87139 0.86882 0.74317 0.92125 0.91847 0.88290 0.86242 0.82087 0.81793 0.74705 0.76288 0.89610 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.29 13.22 21.65 0.29 -55.01 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 42.58 29.55 68.60 2.03 44.61 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.54 -30.28 9.50 67.95 0.65 -29.63 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.16 -8.44 20.57 -56.49 -1.16 -9.60 16 10 C -0.13 -4.74 6.16 71.23 0.44 -4.30 16 11 C 0.53 18.08 7.85 87.66 0.69 18.77 16 12 O -0.57 -25.23 15.86 -3.04 -0.05 -25.28 16 13 N -0.71 -14.70 5.56 -463.05 -2.57 -17.28 16 14 C 0.15 2.72 5.95 86.38 0.51 3.24 16 15 C -0.11 -1.07 5.40 -10.79 -0.06 -1.13 16 16 H 0.13 0.85 8.04 -2.39 -0.02 0.83 16 17 C -0.16 -1.16 6.74 -9.92 -0.07 -1.22 16 18 H 0.13 0.94 8.12 -2.38 -0.02 0.92 16 19 C 0.13 0.46 6.73 86.55 0.58 1.04 16 20 N -0.63 -7.50 3.32 -807.88 -2.68 -10.18 16 21 C 0.52 9.11 7.91 87.66 0.69 9.80 16 22 O -0.56 -17.41 14.45 20.44 0.30 -17.11 16 23 C -0.15 -0.89 5.16 29.10 0.15 -0.73 16 24 C 0.51 7.00 8.09 87.66 0.71 7.71 16 25 N -0.84 -3.06 8.87 -173.53 -1.54 -4.60 16 26 O -0.57 -16.48 15.02 20.41 0.31 -16.18 16 27 C 0.13 1.79 6.85 86.53 0.59 2.38 16 28 C -0.17 -1.95 6.84 -9.94 -0.07 -2.02 16 29 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 31 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 32 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 33 H 0.42 5.45 8.40 -92.71 -0.78 4.68 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.27 7.94 -2.38 -0.02 1.25 16 36 H 0.10 0.08 8.14 -2.39 -0.02 0.07 16 37 H 0.12 -0.29 7.30 -2.39 -0.02 -0.31 16 38 H 0.16 -0.29 7.95 -2.39 -0.02 -0.31 16 39 H 0.16 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.42 -2.06 8.83 -92.70 -0.82 -2.88 16 41 H 0.41 1.58 8.93 -92.71 -0.83 0.76 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 1.22 7.88 -2.39 -0.02 1.20 16 Total: -1.00 -99.71 382.91 -1.15 -100.86 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -1.35 Total: 4.67 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.29 Total: 5.10 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -6.50 Total: -87.06 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: 0.55 Total: -58.57 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -99.71 -1.15 -100.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756192273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.479 kcal (2) G-P(sol) polarization free energy of solvation -99.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds