Wall clock time and date at job start Sat Apr 11 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35309 * 126.66216 * 2 1 4 4 C 1.42275 * 103.91859 * 180.02562 * 3 2 1 5 5 C 1.48334 * 126.93779 * 180.02562 * 4 3 2 6 6 O 1.21493 * 120.00087 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00028 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27546 * 7 5 4 9 9 H 1.09004 * 109.47372 * 34.71852 * 8 7 5 10 10 C 1.52997 * 109.47036 * 274.72131 * 8 7 5 11 11 C 1.52999 * 109.46963 * 154.72290 * 8 7 5 12 12 N 1.46500 * 109.47226 * 304.99288 * 11 8 7 13 13 C 1.46496 * 120.00407 * 270.00553 * 12 11 8 14 14 C 1.34775 * 119.99693 * 90.00269 * 12 11 8 15 15 O 1.21283 * 120.00190 * 0.02562 * 14 12 11 16 16 C 1.50694 * 120.00167 * 180.02562 * 14 12 11 17 17 S 1.81005 * 109.47524 * 179.97438 * 16 14 12 18 18 C 1.76201 * 100.00377 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99501 * 0.02562 * 18 17 16 20 20 C 1.38789 * 119.99842 * 180.02562 * 18 17 16 21 21 N 1.31639 * 119.99682 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00304 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47186 * 89.99943 * 22 20 18 24 24 H 1.48500 * 109.47188 * 209.99621 * 22 20 18 25 25 H 1.48493 * 109.47194 * 329.99884 * 22 20 18 26 26 N 1.30977 * 106.12329 * 0.25783 * 4 3 2 27 27 O 1.20905 * 111.44112 * 359.54161 * 26 4 3 28 28 H 1.09003 * 109.47206 * 89.99903 * 1 2 3 29 29 H 1.09000 * 109.47062 * 209.99385 * 1 2 3 30 30 H 1.08993 * 109.47413 * 330.00118 * 1 2 3 31 31 H 1.08000 * 128.04307 * 0.02562 * 3 2 1 32 32 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 33 33 H 1.09003 * 109.47189 * 180.02562 * 10 8 7 34 34 H 1.09009 * 109.47238 * 300.00198 * 10 8 7 35 35 H 1.08997 * 109.47293 * 60.00168 * 10 8 7 36 36 H 1.08995 * 109.47415 * 64.99597 * 11 8 7 37 37 H 1.09008 * 109.47087 * 184.99936 * 11 8 7 38 38 H 1.08999 * 109.47536 * 90.00038 * 13 12 11 39 39 H 1.09001 * 109.46840 * 210.00202 * 13 12 11 40 40 H 1.09002 * 109.46797 * 329.99503 * 13 12 11 41 41 H 1.09000 * 109.47584 * 299.99944 * 16 14 12 42 42 H 1.09004 * 109.47426 * 60.00121 * 16 14 12 43 43 H 0.96997 * 119.99396 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5354 -0.0006 5 6 4.9076 1.2842 -0.0003 6 8 4.9008 2.4991 0.0000 7 7 6.0785 0.6168 -0.0005 8 6 7.3431 1.3564 0.0059 9 1 7.2289 2.2664 0.5950 10 6 7.7268 1.7227 -1.4292 11 6 8.4403 0.4851 0.6206 12 7 8.0197 0.0359 1.9501 13 6 8.3390 0.8423 3.1307 14 6 7.3391 -1.1193 2.0870 15 8 7.0751 -1.7871 1.1096 16 6 6.9059 -1.5811 3.4544 17 16 6.0198 -3.1526 3.3080 18 6 5.6420 -3.4501 5.0031 19 1 5.9554 -2.7442 5.7581 20 6 4.9416 -4.5914 5.3680 21 7 4.6589 -4.8134 6.6344 22 14 4.4001 -5.8125 4.0622 23 1 5.4638 -6.8296 3.8641 24 1 3.1495 -6.4831 4.4998 25 1 4.1566 -5.0957 2.7847 26 7 3.4761 -0.7657 -0.0066 27 8 2.3073 -1.0750 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3634 0.8899 0.5138 31 1 2.0301 2.1272 0.0004 32 1 6.0838 -0.3532 -0.0004 33 1 8.6680 2.2726 -1.4245 34 1 7.8410 0.8127 -2.0184 35 1 6.9452 2.3434 -1.8671 36 1 8.6161 -0.3813 -0.0169 37 1 9.3592 1.0651 0.7070 38 1 7.5321 1.5515 3.3154 39 1 8.4542 0.1896 3.9961 40 1 9.2682 1.3856 2.9592 41 1 7.7831 -1.7159 4.0872 42 1 6.2485 -0.8339 3.8990 43 1 4.1691 -5.6108 6.8893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756432686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:08 Heat of formation + Delta-G solvation = -8.659848 kcal Electronic energy + Delta-G solvation = -27992.443717 eV Core-core repulsion = 23974.766710 eV Total energy + Delta-G solvation = -4017.677007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.05305 -40.30921 -39.19740 -36.35595 -34.80094 -34.15924 -33.44269 -32.44301 -31.29681 -29.63977 -27.93092 -27.39790 -25.78166 -25.46291 -24.95965 -22.78119 -21.47514 -20.18992 -19.43454 -17.79899 -17.74761 -17.63984 -17.04220 -16.67422 -16.47046 -15.88985 -15.37975 -14.97468 -14.84801 -14.35940 -14.04945 -13.83333 -13.80786 -13.62216 -13.45055 -13.36840 -13.03475 -12.82749 -12.77904 -12.61893 -12.53917 -12.39583 -12.01495 -11.90518 -11.41852 -11.33997 -11.25764 -11.01221 -10.60821 -10.46073 -10.31312 -9.86758 -9.60955 -9.46634 -9.23958 -9.00753 -8.70254 -8.49452 -6.91605 -6.29445 -4.00913 1.16991 1.61486 2.63225 2.77815 2.86070 3.01302 3.15844 3.18371 3.32789 3.51355 3.57316 3.98194 4.32786 4.42704 4.54142 4.58781 4.84481 4.88332 4.91461 5.04787 5.07843 5.09737 5.12633 5.18265 5.18863 5.27069 5.34462 5.41443 5.46411 5.52697 5.60661 5.61985 5.73734 5.77432 5.86443 5.95921 5.97093 6.28567 6.48349 7.29480 7.40842 7.93509 7.98968 8.13632 8.31874 8.40586 9.16862 10.79817 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008397 B = 0.004733 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3333.832164 B = 5915.054579 C = 8436.242519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.038 4.038 3 C -0.187 4.187 4 C -0.037 4.037 5 C 0.603 3.397 6 O -0.534 6.534 7 N -0.705 5.705 8 C 0.125 3.875 9 H 0.091 0.909 10 C -0.162 4.162 11 C 0.106 3.894 12 N -0.621 5.621 13 C 0.078 3.922 14 C 0.536 3.464 15 O -0.519 6.519 16 C -0.123 4.123 17 S -0.136 6.136 18 C -0.522 4.522 19 H 0.087 0.913 20 C 0.097 3.903 21 N -0.881 5.881 22 Si 0.855 3.145 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.234 1.234 26 N -0.310 5.310 27 O 0.132 5.868 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.420 0.580 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 15.036 -14.211 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 C -0.210 4.210 4 C -0.196 4.196 5 C 0.387 3.613 6 O -0.410 6.410 7 N -0.362 5.362 8 C 0.019 3.981 9 H 0.109 0.891 10 C -0.221 4.221 11 C -0.017 4.017 12 N -0.357 5.357 13 C -0.066 4.066 14 C 0.324 3.676 15 O -0.394 6.394 16 C -0.273 4.273 17 S 0.091 5.909 18 C -0.669 4.669 19 H 0.105 0.895 20 C -0.112 4.112 21 N -0.517 5.517 22 Si 0.679 3.321 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.157 1.157 26 N -0.007 5.007 27 O 0.053 5.947 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.195 0.805 32 H 0.261 0.739 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.837 13.792 -15.499 20.764 hybrid contribution -0.276 0.548 1.072 1.235 sum 0.561 14.341 -14.427 20.350 Atomic orbital electron populations 1.20359 0.83526 1.05051 1.04128 1.24522 0.96641 0.85593 1.03303 1.22348 0.89702 1.01302 1.07619 1.23436 0.96595 0.90397 1.09158 1.16893 0.81861 0.86229 0.76328 1.90747 1.87054 1.12518 1.50717 1.46246 1.04500 1.12356 1.73103 1.21502 0.83218 0.96032 0.97364 0.89098 1.22132 1.02089 1.02165 0.95667 1.21834 0.96109 0.99458 0.84338 1.47829 1.57554 1.22947 1.07332 1.21849 1.00856 0.95870 0.87977 1.20367 0.76413 0.79447 0.91367 1.90619 1.54248 1.54298 1.40222 1.23312 1.04144 1.03742 0.96117 1.84812 1.70791 1.21808 1.13524 1.22314 1.42523 1.11923 0.90186 0.89498 1.24692 0.94121 0.96971 0.95384 1.69944 1.38711 1.27463 1.15595 0.86761 0.79196 0.82445 0.83666 1.19221 1.19915 1.15746 1.74368 0.97002 1.15226 1.14152 1.84857 1.11100 1.33330 1.65430 0.89334 0.89371 0.88891 0.80463 0.73879 0.91189 0.91987 0.91678 0.88996 0.88707 0.92591 0.90366 0.90955 0.88485 0.88723 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.45 36.01 0.38 -0.11 16 2 C -0.04 -0.44 7.47 -35.35 -0.26 -0.70 16 3 C -0.19 -2.40 10.92 -39.08 -0.43 -2.82 16 4 C -0.04 -0.59 7.19 -82.53 -0.59 -1.18 16 5 C 0.60 9.83 7.82 -12.11 -0.09 9.73 16 6 O -0.53 -9.25 16.61 5.37 0.09 -9.16 16 7 N -0.71 -10.60 4.48 -54.60 -0.24 -10.85 16 8 C 0.12 1.45 2.88 -67.93 -0.20 1.25 16 9 H 0.09 1.09 7.57 -51.93 -0.39 0.70 16 10 C -0.16 -1.54 9.49 37.16 0.35 -1.19 16 11 C 0.11 1.13 5.19 -4.04 -0.02 1.11 16 12 N -0.62 -8.10 2.77 -181.58 -0.50 -8.60 16 13 C 0.08 0.77 10.29 59.84 0.62 1.39 16 14 C 0.54 9.44 6.99 -10.99 -0.08 9.36 16 15 O -0.52 -10.51 13.18 5.55 0.07 -10.44 16 16 C -0.12 -2.42 4.71 36.00 0.17 -2.25 16 17 S -0.14 -3.45 18.55 -107.50 -1.99 -5.44 16 18 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 19 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 20 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 21 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 22 Si 0.85 21.86 27.74 -169.99 -4.72 17.14 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.23 -5.99 6.74 56.52 0.38 -5.61 16 26 N -0.31 -5.38 11.84 33.29 0.39 -4.98 16 27 O 0.13 2.00 11.18 17.25 0.19 2.19 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.42 7.11 5.58 -40.82 -0.23 6.88 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.08 7.42 -51.93 -0.39 0.69 16 37 H 0.09 0.68 7.89 -51.92 -0.41 0.27 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.80 6.44 -51.93 -0.33 0.47 16 40 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 41 H 0.10 1.77 7.40 -51.92 -0.38 1.39 16 42 H 0.09 1.82 8.11 -51.91 -0.42 1.40 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -36.30 379.89 -6.08 -42.38 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.93 Total: 5.31 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 0.06 Total: 2.56 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.42 Total: -50.27 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.36 Total: -17.41 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.30 -6.08 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756432686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.718 kcal (2) G-P(sol) polarization free energy of solvation -36.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds