Wall clock time and date at job start Sat Apr 11 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35309 * 126.66216 * 2 1 4 4 C 1.42275 * 103.91859 * 180.02562 * 3 2 1 5 5 C 1.48334 * 126.93779 * 180.02562 * 4 3 2 6 6 O 1.21493 * 120.00087 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00028 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27546 * 7 5 4 9 9 H 1.09004 * 109.47372 * 34.71852 * 8 7 5 10 10 C 1.52997 * 109.47036 * 274.72131 * 8 7 5 11 11 C 1.52999 * 109.46963 * 154.72290 * 8 7 5 12 12 N 1.46500 * 109.47226 * 304.99288 * 11 8 7 13 13 C 1.46496 * 120.00407 * 270.00553 * 12 11 8 14 14 C 1.34775 * 119.99693 * 90.00269 * 12 11 8 15 15 O 1.21283 * 120.00190 * 0.02562 * 14 12 11 16 16 C 1.50694 * 120.00167 * 180.02562 * 14 12 11 17 17 S 1.81005 * 109.47524 * 179.97438 * 16 14 12 18 18 C 1.76201 * 100.00377 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99501 * 0.02562 * 18 17 16 20 20 C 1.38789 * 119.99842 * 180.02562 * 18 17 16 21 21 N 1.31639 * 119.99682 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00304 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47186 * 89.99943 * 22 20 18 24 24 H 1.48500 * 109.47188 * 209.99621 * 22 20 18 25 25 H 1.48493 * 109.47194 * 329.99884 * 22 20 18 26 26 N 1.30977 * 106.12329 * 0.25783 * 4 3 2 27 27 O 1.20905 * 111.44112 * 359.54161 * 26 4 3 28 28 H 1.09003 * 109.47206 * 89.99903 * 1 2 3 29 29 H 1.09000 * 109.47062 * 209.99385 * 1 2 3 30 30 H 1.08993 * 109.47413 * 330.00118 * 1 2 3 31 31 H 1.08000 * 128.04307 * 0.02562 * 3 2 1 32 32 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 33 33 H 1.09003 * 109.47189 * 180.02562 * 10 8 7 34 34 H 1.09009 * 109.47238 * 300.00198 * 10 8 7 35 35 H 1.08997 * 109.47293 * 60.00168 * 10 8 7 36 36 H 1.08995 * 109.47415 * 64.99597 * 11 8 7 37 37 H 1.09008 * 109.47087 * 184.99936 * 11 8 7 38 38 H 1.08999 * 109.47536 * 90.00038 * 13 12 11 39 39 H 1.09001 * 109.46840 * 210.00202 * 13 12 11 40 40 H 1.09002 * 109.46797 * 329.99503 * 13 12 11 41 41 H 1.09000 * 109.47584 * 299.99944 * 16 14 12 42 42 H 1.09004 * 109.47426 * 60.00121 * 16 14 12 43 43 H 0.96997 * 119.99396 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5354 -0.0006 5 6 4.9076 1.2842 -0.0003 6 8 4.9008 2.4991 0.0000 7 7 6.0785 0.6168 -0.0005 8 6 7.3431 1.3564 0.0059 9 1 7.2289 2.2664 0.5950 10 6 7.7268 1.7227 -1.4292 11 6 8.4403 0.4851 0.6206 12 7 8.0197 0.0359 1.9501 13 6 8.3390 0.8423 3.1307 14 6 7.3391 -1.1193 2.0870 15 8 7.0751 -1.7871 1.1096 16 6 6.9059 -1.5811 3.4544 17 16 6.0198 -3.1526 3.3080 18 6 5.6420 -3.4501 5.0031 19 1 5.9554 -2.7442 5.7581 20 6 4.9416 -4.5914 5.3680 21 7 4.6589 -4.8134 6.6344 22 14 4.4001 -5.8125 4.0622 23 1 5.4638 -6.8296 3.8641 24 1 3.1495 -6.4831 4.4998 25 1 4.1566 -5.0957 2.7847 26 7 3.4761 -0.7657 -0.0066 27 8 2.3073 -1.0750 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3634 0.8899 0.5138 31 1 2.0301 2.1272 0.0004 32 1 6.0838 -0.3532 -0.0004 33 1 8.6680 2.2726 -1.4245 34 1 7.8410 0.8127 -2.0184 35 1 6.9452 2.3434 -1.8671 36 1 8.6161 -0.3813 -0.0169 37 1 9.3592 1.0651 0.7070 38 1 7.5321 1.5515 3.3154 39 1 8.4542 0.1896 3.9961 40 1 9.2682 1.3856 2.9592 41 1 7.7831 -1.7159 4.0872 42 1 6.2485 -0.8339 3.8990 43 1 4.1691 -5.6108 6.8893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756432686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:07 Heat of formation + Delta-G solvation = -34.429244 kcal Electronic energy + Delta-G solvation = -27993.561162 eV Core-core repulsion = 23974.766710 eV Total energy + Delta-G solvation = -4018.794452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.17043 -41.49542 -40.46292 -37.51040 -35.93706 -35.20897 -34.69564 -34.40584 -32.38812 -31.00198 -28.72039 -28.32786 -27.88964 -26.61485 -26.08880 -23.86176 -22.48080 -21.29730 -20.78704 -19.61688 -18.94065 -18.71064 -18.29498 -17.89199 -17.59667 -17.20298 -17.02725 -16.60096 -16.07626 -15.81281 -15.42688 -14.97008 -14.90258 -14.81622 -14.61885 -14.49542 -13.97959 -13.96106 -13.74490 -13.66114 -13.41500 -13.35954 -13.32708 -13.08683 -13.00116 -12.80853 -12.62620 -12.39363 -12.23048 -11.89261 -11.60040 -11.51721 -11.19343 -11.03124 -10.55082 -10.43042 -10.35793 -9.78536 -9.01308 -8.53936 -6.24369 0.02635 0.63820 0.94239 1.28720 1.39352 1.44696 1.51594 1.77720 1.96560 2.03298 2.12745 2.23067 2.65867 2.84424 2.88410 3.49387 3.52128 3.68122 3.91794 4.02765 4.07243 4.10280 4.13185 4.26998 4.30876 4.36602 4.44068 4.59028 4.63345 4.73344 4.74793 4.80162 4.83311 4.87365 4.90678 5.16294 5.22333 5.28259 5.47635 5.68067 6.07989 6.11621 6.18894 6.80271 6.91295 7.00578 7.04463 8.58741 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008397 B = 0.004733 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3333.832164 B = 5915.054579 C = 8436.242519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.022 4.022 3 C -0.198 4.198 4 C -0.059 4.059 5 C 0.597 3.403 6 O -0.552 6.552 7 N -0.707 5.707 8 C 0.119 3.881 9 H 0.090 0.910 10 C -0.154 4.154 11 C 0.107 3.893 12 N -0.609 5.609 13 C 0.069 3.931 14 C 0.534 3.466 15 O -0.551 6.551 16 C -0.110 4.110 17 S -0.165 6.165 18 C -0.531 4.531 19 H 0.059 0.941 20 C 0.049 3.951 21 N -0.916 5.916 22 Si 0.912 3.088 23 H -0.261 1.261 24 H -0.257 1.257 25 H -0.239 1.239 26 N -0.350 5.350 27 O 0.117 5.883 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.199 0.801 32 H 0.411 0.589 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.144 0.856 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 16.415 -15.384 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 C -0.221 4.221 4 C -0.218 4.218 5 C 0.381 3.619 6 O -0.430 6.430 7 N -0.362 5.362 8 C 0.014 3.986 9 H 0.109 0.891 10 C -0.212 4.212 11 C -0.016 4.016 12 N -0.342 5.342 13 C -0.073 4.073 14 C 0.322 3.678 15 O -0.429 6.429 16 C -0.260 4.260 17 S 0.062 5.938 18 C -0.679 4.679 19 H 0.077 0.923 20 C -0.156 4.156 21 N -0.554 5.554 22 Si 0.734 3.266 23 H -0.185 1.185 24 H -0.181 1.181 25 H -0.163 1.163 26 N -0.050 5.050 27 O 0.040 5.960 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.216 0.784 32 H 0.251 0.749 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.162 0.838 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.115 0.885 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.252 15.208 -16.661 22.592 hybrid contribution -0.360 0.287 1.460 1.531 sum 0.892 15.495 -15.200 21.724 Atomic orbital electron populations 1.20680 0.79703 1.06460 1.06107 1.25429 0.98379 0.84179 1.00493 1.22679 0.88525 1.02662 1.08203 1.23770 0.97830 0.90577 1.09576 1.17050 0.82399 0.86148 0.76271 1.90715 1.87377 1.12934 1.51943 1.46448 1.05432 1.12008 1.72276 1.21782 0.82126 0.95769 0.98889 0.89148 1.22076 1.03108 1.02172 0.93872 1.22109 0.97377 0.99512 0.82554 1.47824 1.55511 1.21375 1.09477 1.22131 1.02909 0.95610 0.86618 1.19975 0.77191 0.80939 0.89721 1.90613 1.55903 1.55843 1.40578 1.23275 1.03956 1.00328 0.98478 1.84705 1.72222 1.25999 1.10882 1.22457 1.42336 1.11483 0.91590 0.92272 1.25515 0.94175 0.98653 0.97276 1.70018 1.39646 1.28480 1.17259 0.85907 0.79564 0.80277 0.80898 1.18541 1.18098 1.16287 1.74359 0.98221 1.16102 1.16320 1.84796 1.10995 1.34727 1.65509 0.86858 0.88716 0.86615 0.78376 0.74915 0.87771 0.92147 0.93346 0.89973 0.83842 0.92509 0.90766 0.86800 0.86981 0.88494 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.45 71.24 0.74 -0.03 16 2 C -0.02 -0.49 7.47 25.01 0.19 -0.30 16 3 C -0.20 -5.00 10.92 22.60 0.25 -4.75 16 4 C -0.06 -1.96 7.19 42.96 0.31 -1.65 16 5 C 0.60 19.76 7.82 86.93 0.68 20.44 16 6 O -0.55 -19.14 16.61 -3.69 -0.06 -19.20 16 7 N -0.71 -21.29 4.48 -444.95 -1.99 -23.28 16 8 C 0.12 2.56 2.88 44.99 0.13 2.69 16 9 H 0.09 1.99 7.57 -2.39 -0.02 1.97 16 10 C -0.15 -2.63 9.49 71.98 0.68 -1.95 16 11 C 0.11 1.98 5.19 86.38 0.45 2.43 16 12 N -0.61 -14.62 2.77 -846.77 -2.35 -16.97 16 13 C 0.07 1.18 10.29 127.77 1.31 2.50 16 14 C 0.53 18.55 6.99 87.66 0.61 19.16 16 15 O -0.55 -22.48 13.18 -3.04 -0.04 -22.53 16 16 C -0.11 -4.32 4.71 71.23 0.34 -3.99 16 17 S -0.16 -8.48 18.55 -56.49 -1.05 -9.53 16 18 C -0.53 -31.43 10.04 67.95 0.68 -30.75 16 19 H 0.06 3.70 8.03 -2.91 -0.02 3.68 16 20 C 0.05 2.93 5.50 84.85 0.47 3.40 16 21 N -0.92 -56.16 13.97 21.65 0.30 -55.85 16 22 Si 0.91 45.53 27.74 68.60 1.90 47.43 16 23 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.24 -12.06 6.74 99.48 0.67 -11.39 16 26 N -0.35 -12.59 11.84 -49.52 -0.59 -13.17 16 27 O 0.12 3.61 11.18 71.91 0.80 4.41 16 28 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.20 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.41 14.22 5.58 -92.71 -0.52 13.71 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.77 7.42 -2.39 -0.02 1.75 16 37 H 0.14 1.31 7.89 -2.38 -0.02 1.29 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.36 6.44 -2.39 -0.02 1.34 16 40 H 0.11 1.05 7.89 -2.39 -0.02 1.03 16 41 H 0.11 4.05 7.40 -2.39 -0.02 4.03 16 42 H 0.10 3.76 8.11 -2.39 -0.02 3.74 16 43 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -82.55 379.89 4.26 -78.29 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.49 Total: 23.22 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.84 Total: 7.19 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -4.63 Total: -109.28 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: 0.70 Total: -37.32 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.43 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.05 Total: -9.53 kcal Total: -82.55 4.26 -78.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756432686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.862 kcal (2) G-P(sol) polarization free energy of solvation -82.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds