Wall clock time and date at job start Sat Apr 11 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35320 * 126.66316 * 2 1 4 4 C 1.42271 * 103.92088 * 180.12433 * 3 2 1 5 5 C 1.48331 * 126.93935 * 179.90535 * 4 3 2 6 6 O 1.21493 * 120.00143 * 359.71642 * 5 4 3 7 7 N 1.34779 * 120.00004 * 179.70832 * 5 4 3 8 8 C 1.46496 * 119.99965 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.47464 * 325.00834 * 8 7 5 10 10 C 1.53006 * 109.46995 * 85.00573 * 8 7 5 11 11 C 1.52999 * 109.47487 * 205.00106 * 8 7 5 12 12 N 1.46504 * 109.46795 * 55.00145 * 11 8 7 13 13 C 1.46500 * 120.00010 * 270.00070 * 12 11 8 14 14 C 1.34776 * 119.99820 * 90.00044 * 12 11 8 15 15 O 1.21276 * 120.00172 * 0.02562 * 14 12 11 16 16 C 1.50700 * 119.99739 * 180.02562 * 14 12 11 17 17 S 1.81005 * 109.47153 * 180.02562 * 16 14 12 18 18 C 1.76198 * 100.00204 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99693 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00017 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00038 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99846 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47226 * 89.99519 * 22 20 18 24 24 H 1.48499 * 109.46773 * 209.99574 * 22 20 18 25 25 H 1.48501 * 109.47189 * 329.99409 * 22 20 18 26 26 N 1.30989 * 106.12186 * 359.64677 * 4 3 2 27 27 O 1.20900 * 111.44171 * 0.22503 * 26 4 3 28 28 H 1.09002 * 109.46909 * 180.28493 * 1 2 3 29 29 H 1.08997 * 109.47361 * 300.29164 * 1 2 3 30 30 H 1.09001 * 109.46721 * 60.29724 * 1 2 3 31 31 H 1.07998 * 128.03908 * 0.02562 * 3 2 1 32 32 H 0.97003 * 120.00044 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47002 * 299.99701 * 10 8 7 34 34 H 1.08993 * 109.46955 * 60.00138 * 10 8 7 35 35 H 1.09000 * 109.47050 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.47756 * 174.99813 * 11 8 7 37 37 H 1.09001 * 109.47317 * 295.00696 * 11 8 7 38 38 H 1.09000 * 109.47076 * 90.00219 * 13 12 11 39 39 H 1.08996 * 109.46923 * 209.99866 * 13 12 11 40 40 H 1.08992 * 109.47251 * 329.99937 * 13 12 11 41 41 H 1.09007 * 109.47197 * 299.99593 * 16 14 12 42 42 H 1.09000 * 109.47603 * 59.99972 * 16 14 12 43 43 H 0.97004 * 119.99703 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6271 0.5355 -0.0030 5 6 4.9075 1.2843 -0.0062 6 8 4.9008 2.4992 -0.0117 7 7 6.0785 0.6169 -0.0029 8 6 7.3431 1.3564 -0.0055 9 1 7.2320 2.2641 -0.5987 10 6 7.7193 1.7284 1.4302 11 6 8.4436 0.4829 -0.6110 12 7 8.0300 0.0284 -1.9409 13 6 7.2909 -1.2279 -2.0887 14 6 8.3294 0.7660 -3.0284 15 8 8.9416 1.8057 -2.9062 16 6 7.9034 0.2988 -4.3964 17 16 8.4497 1.4952 -5.6399 18 6 7.8360 0.7218 -7.0992 19 1 7.3041 -0.2157 -7.0306 20 6 8.0370 1.3167 -8.3370 21 7 8.6856 2.4590 -8.4206 22 14 7.3869 0.4963 -9.8842 23 1 6.0074 0.9744 -10.1558 24 1 8.2645 0.8388 -11.0321 25 1 7.3720 -0.9765 -9.6946 26 7 3.4761 -0.7657 0.0033 27 8 2.3073 -1.0749 0.0051 28 1 -0.3633 -1.0277 0.0051 29 1 -0.3634 0.5183 0.8873 30 1 -0.3633 0.5092 -0.8927 31 1 2.0301 2.1272 0.0004 32 1 6.0839 -0.3531 0.0012 33 1 6.9354 2.3508 1.8616 34 1 7.8304 0.8207 2.0233 35 1 8.6605 2.2782 1.4283 36 1 9.3628 1.0625 -0.6948 37 1 8.6161 -0.3811 0.0308 38 1 6.2210 -1.0298 -2.0237 39 1 7.5199 -1.6724 -3.0571 40 1 7.5818 -1.9161 -1.2951 41 1 8.3527 -0.6722 -4.6050 42 1 6.8174 0.2110 -4.4286 43 1 8.8258 2.8750 -9.2857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756432687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:10 Heat of formation + Delta-G solvation = -7.890100 kcal Electronic energy + Delta-G solvation = -27177.240158 eV Core-core repulsion = 23159.596530 eV Total energy + Delta-G solvation = -4017.643628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.39907 -40.25867 -39.23516 -36.49797 -34.56642 -34.46622 -33.75666 -32.42534 -31.53111 -29.47918 -28.23970 -27.30793 -25.79639 -25.44784 -24.95834 -23.06421 -21.58296 -20.40893 -19.36182 -18.16028 -17.92516 -17.69131 -17.17715 -16.76237 -16.28664 -15.87729 -15.41350 -14.99165 -14.80199 -14.59744 -14.11930 -14.05762 -14.00780 -13.72800 -13.53088 -13.32870 -12.97029 -12.91500 -12.84674 -12.62296 -12.42799 -12.20002 -12.05791 -11.86312 -11.78215 -11.27877 -11.06251 -11.02095 -10.76816 -10.75785 -10.45602 -9.80899 -9.78057 -9.49388 -9.34894 -9.06257 -8.58194 -8.22618 -6.49728 -6.21160 -3.91793 0.79939 1.34571 2.53792 2.70114 2.90123 2.95189 3.02779 3.22476 3.25548 3.30211 3.58267 3.65277 4.14457 4.20451 4.56844 4.61328 4.70315 4.77465 4.91776 4.93905 4.97444 5.05368 5.10422 5.13869 5.16026 5.28701 5.34587 5.36657 5.47615 5.52015 5.59179 5.61324 5.68938 5.83726 5.88819 5.97222 6.12015 6.21106 6.55400 7.11963 7.44428 7.59763 7.65714 7.87936 8.35435 8.51097 9.23978 10.86293 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010144 B = 0.002962 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.646741 B = 9451.692536 C =11252.939281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.032 4.032 3 C -0.185 4.185 4 C -0.021 4.021 5 C 0.599 3.401 6 O -0.516 6.516 7 N -0.705 5.705 8 C 0.122 3.878 9 H 0.100 0.900 10 C -0.160 4.160 11 C 0.111 3.889 12 N -0.624 5.624 13 C 0.078 3.922 14 C 0.534 3.466 15 O -0.512 6.512 16 C -0.150 4.150 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.334 5.334 27 O 0.121 5.879 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.181 0.819 32 H 0.403 0.597 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.258 -9.606 22.307 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 C -0.207 4.207 4 C -0.180 4.180 5 C 0.382 3.618 6 O -0.389 6.389 7 N -0.357 5.357 8 C 0.017 3.983 9 H 0.118 0.882 10 C -0.219 4.219 11 C -0.013 4.013 12 N -0.360 5.360 13 C -0.066 4.066 14 C 0.322 3.678 15 O -0.385 6.385 16 C -0.300 4.300 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 N -0.036 5.036 27 O 0.045 5.955 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.198 0.802 32 H 0.238 0.762 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.323 -8.019 22.353 26.309 hybrid contribution -1.571 -1.540 -1.167 2.490 sum -12.894 -9.559 21.186 26.580 Atomic orbital electron populations 1.20395 0.83289 1.04979 1.04531 1.24513 0.96592 0.85330 1.03038 1.22456 0.89714 1.01708 1.06854 1.23530 0.96858 0.90179 1.07469 1.16864 0.81613 0.86437 0.76893 1.90831 1.86598 1.12440 1.49044 1.45908 1.05194 1.10510 1.74109 1.21609 0.82318 0.96843 0.97521 0.88167 1.22113 1.02601 1.01884 0.95256 1.21759 0.97548 0.98808 0.83188 1.47820 1.58342 1.23745 1.06093 1.21840 0.96018 0.85327 1.03411 1.20361 0.78364 0.83561 0.85489 1.90699 1.39017 1.22822 1.85990 1.23551 1.04389 1.05960 0.96126 1.85402 1.74024 1.27857 0.96081 1.22850 1.42347 1.10640 0.92483 0.90995 1.24992 0.94894 0.94939 0.98746 1.70021 1.38457 1.16225 1.25543 0.86171 0.78767 0.79431 0.81149 1.20262 1.20725 1.19691 1.74131 0.97421 1.15511 1.16524 1.84768 1.11101 1.33506 1.66092 0.89585 0.88871 0.88734 0.80154 0.76194 0.91752 0.92346 0.90803 0.87861 0.90136 0.93016 0.90296 0.91231 0.89227 0.89459 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.24 10.45 36.01 0.38 0.14 16 2 C -0.03 -0.24 7.47 -35.35 -0.26 -0.50 16 3 C -0.18 -1.81 10.92 -39.07 -0.43 -2.24 16 4 C -0.02 -0.25 7.19 -82.53 -0.59 -0.85 16 5 C 0.60 8.29 7.81 -12.11 -0.09 8.19 16 6 O -0.52 -8.80 16.61 5.37 0.09 -8.71 16 7 N -0.70 -8.17 4.35 -54.60 -0.24 -8.41 16 8 C 0.12 1.46 2.88 -67.93 -0.20 1.27 16 9 H 0.10 1.60 7.58 -51.93 -0.39 1.21 16 10 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 11 C 0.11 1.25 5.07 -4.04 -0.02 1.23 16 12 N -0.62 -8.63 2.73 -181.58 -0.50 -9.13 16 13 C 0.08 0.81 9.02 59.85 0.54 1.35 16 14 C 0.53 10.27 7.69 -10.99 -0.08 10.19 16 15 O -0.51 -11.71 15.44 5.56 0.09 -11.62 16 16 C -0.15 -3.13 4.71 36.01 0.17 -2.96 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 22 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 N -0.33 -3.69 11.84 33.29 0.39 -3.30 16 27 O 0.12 1.13 11.18 17.24 0.19 1.32 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.18 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.40 3.92 6.83 -40.82 -0.28 3.64 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 1.28 7.42 -51.93 -0.39 0.90 16 37 H 0.08 0.64 7.89 -51.93 -0.41 0.23 16 38 H 0.05 0.55 7.39 -51.93 -0.38 0.16 16 39 H 0.08 0.85 6.44 -51.93 -0.33 0.52 16 40 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 41 H 0.09 1.71 7.40 -51.91 -0.38 1.33 16 42 H 0.09 1.74 8.11 -51.92 -0.42 1.32 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -37.65 384.49 -6.63 -44.27 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.90 Total: 1.27 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -0.04 Total: 1.52 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.39 Total: -46.56 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.37 Total: -19.01 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.65 -6.63 -44.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756432687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.383 kcal (2) G-P(sol) polarization free energy of solvation -37.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds