Wall clock time and date at job start Sat Apr 11 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35320 * 126.66316 * 2 1 4 4 C 1.42271 * 103.92088 * 180.12433 * 3 2 1 5 5 C 1.48331 * 126.93935 * 179.90535 * 4 3 2 6 6 O 1.21493 * 120.00143 * 359.71642 * 5 4 3 7 7 N 1.34779 * 120.00004 * 179.70832 * 5 4 3 8 8 C 1.46496 * 119.99965 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.47464 * 325.00834 * 8 7 5 10 10 C 1.53006 * 109.46995 * 85.00573 * 8 7 5 11 11 C 1.52999 * 109.47487 * 205.00106 * 8 7 5 12 12 N 1.46504 * 109.46795 * 55.00145 * 11 8 7 13 13 C 1.46500 * 120.00010 * 270.00070 * 12 11 8 14 14 C 1.34776 * 119.99820 * 90.00044 * 12 11 8 15 15 O 1.21276 * 120.00172 * 0.02562 * 14 12 11 16 16 C 1.50700 * 119.99739 * 180.02562 * 14 12 11 17 17 S 1.81005 * 109.47153 * 180.02562 * 16 14 12 18 18 C 1.76198 * 100.00204 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99693 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00017 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00038 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99846 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47226 * 89.99519 * 22 20 18 24 24 H 1.48499 * 109.46773 * 209.99574 * 22 20 18 25 25 H 1.48501 * 109.47189 * 329.99409 * 22 20 18 26 26 N 1.30989 * 106.12186 * 359.64677 * 4 3 2 27 27 O 1.20900 * 111.44171 * 0.22503 * 26 4 3 28 28 H 1.09002 * 109.46909 * 180.28493 * 1 2 3 29 29 H 1.08997 * 109.47361 * 300.29164 * 1 2 3 30 30 H 1.09001 * 109.46721 * 60.29724 * 1 2 3 31 31 H 1.07998 * 128.03908 * 0.02562 * 3 2 1 32 32 H 0.97003 * 120.00044 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47002 * 299.99701 * 10 8 7 34 34 H 1.08993 * 109.46955 * 60.00138 * 10 8 7 35 35 H 1.09000 * 109.47050 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.47756 * 174.99813 * 11 8 7 37 37 H 1.09001 * 109.47317 * 295.00696 * 11 8 7 38 38 H 1.09000 * 109.47076 * 90.00219 * 13 12 11 39 39 H 1.08996 * 109.46923 * 209.99866 * 13 12 11 40 40 H 1.08992 * 109.47251 * 329.99937 * 13 12 11 41 41 H 1.09007 * 109.47197 * 299.99593 * 16 14 12 42 42 H 1.09000 * 109.47603 * 59.99972 * 16 14 12 43 43 H 0.97004 * 119.99703 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6271 0.5355 -0.0030 5 6 4.9075 1.2843 -0.0062 6 8 4.9008 2.4992 -0.0117 7 7 6.0785 0.6169 -0.0029 8 6 7.3431 1.3564 -0.0055 9 1 7.2320 2.2641 -0.5987 10 6 7.7193 1.7284 1.4302 11 6 8.4436 0.4829 -0.6110 12 7 8.0300 0.0284 -1.9409 13 6 7.2909 -1.2279 -2.0887 14 6 8.3294 0.7660 -3.0284 15 8 8.9416 1.8057 -2.9062 16 6 7.9034 0.2988 -4.3964 17 16 8.4497 1.4952 -5.6399 18 6 7.8360 0.7218 -7.0992 19 1 7.3041 -0.2157 -7.0306 20 6 8.0370 1.3167 -8.3370 21 7 8.6856 2.4590 -8.4206 22 14 7.3869 0.4963 -9.8842 23 1 6.0074 0.9744 -10.1558 24 1 8.2645 0.8388 -11.0321 25 1 7.3720 -0.9765 -9.6946 26 7 3.4761 -0.7657 0.0033 27 8 2.3073 -1.0749 0.0051 28 1 -0.3633 -1.0277 0.0051 29 1 -0.3634 0.5183 0.8873 30 1 -0.3633 0.5092 -0.8927 31 1 2.0301 2.1272 0.0004 32 1 6.0839 -0.3531 0.0012 33 1 6.9354 2.3508 1.8616 34 1 7.8304 0.8207 2.0233 35 1 8.6605 2.2782 1.4283 36 1 9.3628 1.0625 -0.6948 37 1 8.6161 -0.3811 0.0308 38 1 6.2210 -1.0298 -2.0237 39 1 7.5199 -1.6724 -3.0571 40 1 7.5818 -1.9161 -1.2951 41 1 8.3527 -0.6722 -4.6050 42 1 6.8174 0.2110 -4.4286 43 1 8.8258 2.8750 -9.2857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756432687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:09 Heat of formation + Delta-G solvation = -35.115555 kcal Electronic energy + Delta-G solvation = -27178.420742 eV Core-core repulsion = 23159.596530 eV Total energy + Delta-G solvation = -4018.824212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.17632 -41.41528 -40.54298 -37.71032 -35.75541 -35.25080 -34.61871 -34.43400 -32.53723 -30.95159 -28.72054 -28.30760 -27.73865 -26.70325 -25.99782 -23.85884 -22.55374 -21.38824 -20.78393 -19.62412 -18.93693 -18.67650 -18.20288 -18.05284 -17.43629 -17.14305 -16.90920 -16.64890 -16.16206 -15.91116 -15.49411 -14.94946 -14.82589 -14.65759 -14.55517 -14.47885 -13.97998 -13.93199 -13.81462 -13.58768 -13.38314 -13.34350 -13.19942 -13.07532 -12.91931 -12.91105 -12.60771 -12.47688 -12.21716 -11.75498 -11.62084 -11.56530 -11.17347 -10.99218 -10.48119 -10.40802 -10.32024 -9.75614 -8.71877 -8.37625 -6.16867 -0.03439 0.61859 1.21291 1.40377 1.42085 1.49528 1.53740 1.68068 1.94263 2.01007 2.07810 2.24319 2.78879 2.96402 3.21411 3.47334 3.60814 3.68550 3.90253 3.98480 4.07197 4.11256 4.16221 4.26707 4.30514 4.39418 4.46840 4.54488 4.60043 4.70135 4.76375 4.78481 4.82585 4.83551 4.89561 5.15373 5.23502 5.23809 5.37807 5.47814 6.13882 6.16135 6.17073 6.82606 6.96117 7.03103 7.06451 8.71814 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010144 B = 0.002962 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.646741 B = 9451.692536 C =11252.939281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.008 4.008 3 C -0.210 4.210 4 C -0.046 4.046 5 C 0.593 3.407 6 O -0.561 6.561 7 N -0.691 5.691 8 C 0.125 3.875 9 H 0.051 0.949 10 C -0.151 4.151 11 C 0.111 3.889 12 N -0.609 5.609 13 C 0.068 3.932 14 C 0.530 3.470 15 O -0.560 6.560 16 C -0.123 4.123 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.256 1.256 26 N -0.340 5.340 27 O 0.126 5.874 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.185 0.815 32 H 0.415 0.585 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.150 -13.110 23.258 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.071 4.071 3 C -0.233 4.233 4 C -0.204 4.204 5 C 0.378 3.622 6 O -0.438 6.438 7 N -0.344 5.344 8 C 0.020 3.980 9 H 0.069 0.931 10 C -0.209 4.209 11 C -0.012 4.012 12 N -0.343 5.343 13 C -0.074 4.074 14 C 0.318 3.682 15 O -0.438 6.438 16 C -0.275 4.275 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.180 1.180 26 N -0.041 5.041 27 O 0.049 5.951 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.203 0.797 32 H 0.252 0.748 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.114 0.886 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.214 -11.599 23.352 29.231 hybrid contribution -1.076 -0.524 -1.321 1.782 sum -14.290 -12.123 22.031 28.923 Atomic orbital electron populations 1.20684 0.79843 1.06647 1.05975 1.25195 0.98026 0.83825 1.00073 1.22669 0.89382 1.02769 1.08434 1.23435 0.96740 0.90873 1.09330 1.17195 0.82708 0.86123 0.76177 1.90800 1.87323 1.14359 1.51271 1.45821 1.04545 1.10992 1.73055 1.21495 0.82759 0.95255 0.98487 0.93078 1.22041 1.02272 1.03080 0.93541 1.22000 0.96459 1.00528 0.82192 1.47789 1.56983 1.23881 1.05605 1.22167 0.95699 0.84221 1.05332 1.20141 0.78395 0.83481 0.86213 1.90682 1.41525 1.24942 1.86618 1.23363 1.04707 1.04348 0.95034 1.85587 1.75276 1.32250 0.99446 1.23174 1.42496 1.10961 0.92789 0.90020 1.26164 0.94840 0.95476 1.02705 1.70190 1.39893 1.18058 1.26629 0.84933 0.78137 0.78866 0.75915 1.19344 1.20102 1.18012 1.74104 0.98345 1.14791 1.16825 1.84740 1.10850 1.34052 1.65456 0.87810 0.86910 0.87526 0.79731 0.74758 0.93455 0.89315 0.89983 0.89045 0.84988 0.92919 0.90297 0.86715 0.87056 0.88553 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.24 10.45 71.24 0.74 0.50 16 2 C -0.01 -0.11 7.47 25.01 0.19 0.08 16 3 C -0.21 -4.01 10.92 22.60 0.25 -3.76 16 4 C -0.05 -1.09 7.19 42.96 0.31 -0.79 16 5 C 0.59 16.85 7.81 86.93 0.68 17.53 16 6 O -0.56 -20.37 16.61 -3.69 -0.06 -20.43 16 7 N -0.69 -15.58 4.35 -444.94 -1.93 -17.52 16 8 C 0.13 2.99 2.88 44.99 0.13 3.12 16 9 H 0.05 1.76 7.58 -2.39 -0.02 1.74 16 10 C -0.15 -2.74 9.48 71.98 0.68 -2.06 16 11 C 0.11 2.31 5.07 86.38 0.44 2.75 16 12 N -0.61 -15.97 2.73 -846.78 -2.31 -18.28 16 13 C 0.07 1.21 9.02 127.77 1.15 2.36 16 14 C 0.53 20.64 7.69 87.66 0.67 21.31 16 15 O -0.56 -26.83 15.44 -3.02 -0.05 -26.88 16 16 C -0.12 -5.18 4.71 71.24 0.34 -4.85 16 17 S -0.15 -8.80 20.57 -56.49 -1.16 -9.96 16 18 C -0.55 -31.97 9.50 67.95 0.65 -31.32 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.75 5.49 84.86 0.47 1.21 16 21 N -0.91 -57.06 13.22 21.65 0.29 -56.77 16 22 Si 1.00 44.22 29.55 68.60 2.03 46.24 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 26 N -0.34 -7.04 11.84 -49.51 -0.59 -7.62 16 27 O 0.13 2.11 11.18 71.88 0.80 2.91 16 28 H 0.10 0.03 8.14 -2.39 -0.02 0.02 16 29 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.19 3.21 8.06 -2.91 -0.02 3.18 16 32 H 0.41 7.16 6.83 -92.71 -0.63 6.53 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 2.22 7.42 -2.39 -0.02 2.20 16 37 H 0.13 1.46 7.89 -2.39 -0.02 1.44 16 38 H 0.05 0.98 7.39 -2.39 -0.02 0.96 16 39 H 0.08 1.46 6.44 -2.39 -0.02 1.44 16 40 H 0.11 1.08 7.89 -2.39 -0.02 1.06 16 41 H 0.11 4.15 7.40 -2.39 -0.02 4.13 16 42 H 0.10 3.84 8.11 -2.39 -0.02 3.82 16 43 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -88.50 384.49 4.12 -84.39 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.41 Total: 17.82 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 6.69 Total: 6.09 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -4.55 Total: -100.19 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: 0.70 Total: -44.39 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.16 Total: -9.96 kcal Total: -88.50 4.12 -84.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756432687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.273 kcal (2) G-P(sol) polarization free energy of solvation -88.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds