Wall clock time and date at job start Sat Apr 11 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35444 * 126.78078 * 2 1 4 4 C 1.41385 * 103.98584 * 180.13620 * 3 2 1 5 5 C 1.50696 * 126.79826 * 179.89030 * 4 3 2 6 6 C 1.52998 * 109.46969 * 124.71497 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00081 * 179.72561 * 7 6 5 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47161 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47167 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00344 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99845 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00458 * 179.97438 * 13 12 11 16 16 S 1.80992 * 109.47507 * 179.97438 * 15 13 12 17 17 C 1.76196 * 100.00260 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00197 * 180.02562 * 17 16 15 20 20 N 1.31628 * 119.99870 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00268 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47104 * 89.99643 * 21 19 17 23 23 H 1.48501 * 109.47475 * 209.99807 * 21 19 17 24 24 H 1.48499 * 109.47159 * 329.99966 * 21 19 17 25 25 N 1.30177 * 106.39418 * 359.63009 * 4 3 2 26 26 O 1.20919 * 111.60380 * 0.23643 * 25 4 3 27 27 H 1.09000 * 109.47590 * 180.29586 * 1 2 3 28 28 H 1.09003 * 109.47327 * 300.30134 * 1 2 3 29 29 H 1.09006 * 109.46903 * 60.29870 * 1 2 3 30 30 H 1.07997 * 128.00991 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47664 * 4.71425 * 5 4 3 32 32 H 1.09002 * 109.46824 * 244.70896 * 5 4 3 33 33 H 1.09001 * 109.47671 * 59.99812 * 6 5 4 34 34 H 1.08998 * 109.47454 * 299.99809 * 6 5 4 35 35 H 0.96998 * 120.00525 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.46587 * 299.99661 * 10 9 7 37 37 H 1.08998 * 109.47213 * 59.99069 * 10 9 7 38 38 H 1.09004 * 109.47116 * 299.99365 * 11 10 9 39 39 H 1.08993 * 109.47352 * 59.99609 * 11 10 9 40 40 H 0.97004 * 120.00009 * 359.97438 * 12 11 10 41 41 H 1.08999 * 109.47405 * 300.00193 * 15 13 12 42 42 H 1.09006 * 109.46765 * 59.99515 * 15 13 12 43 43 H 0.97004 * 119.99966 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5370 -0.0033 5 6 4.9211 1.2998 -0.0070 6 6 5.7798 0.8498 1.1767 7 6 7.0799 1.6121 1.1727 8 8 7.2982 2.4340 0.3079 9 7 7.9977 1.3840 2.1329 10 6 9.2613 2.1255 2.1293 11 6 10.1169 1.6808 3.3171 12 7 11.3806 2.4218 3.3132 13 6 12.2986 2.1937 4.2733 14 8 12.0782 1.3754 5.1408 15 6 13.5988 2.9555 4.2690 16 16 14.6110 2.4295 5.6742 17 6 16.0267 3.4498 5.4305 18 1 16.0618 4.1344 4.5959 19 6 17.0968 3.3739 6.3112 20 7 17.0538 2.5400 7.3288 21 14 18.5979 4.4551 6.0525 22 1 18.4142 5.7386 6.7764 23 1 19.8033 3.7614 6.5731 24 1 18.7697 4.7249 4.6024 25 7 3.4763 -0.7566 0.0032 26 8 2.3094 -1.0737 0.0052 27 1 -0.3634 -1.0276 0.0053 28 1 -0.3634 0.5185 0.8873 29 1 -0.3633 0.5092 -0.8927 30 1 2.0346 2.1270 0.0004 31 1 4.7164 2.3670 0.0777 32 1 5.4541 1.1047 -0.9375 33 1 5.9846 -0.2175 1.0921 34 1 5.2468 1.0448 2.1072 35 1 7.8214 0.7296 2.8268 36 1 9.7965 1.9266 1.2008 37 1 9.0563 3.1931 2.2090 38 1 9.5814 1.8800 4.2454 39 1 10.3218 0.6132 3.2378 40 1 11.5571 3.0760 2.6191 41 1 14.1338 2.7559 3.3405 42 1 13.3945 4.0233 4.3482 43 1 17.8015 2.4872 7.9445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001757918839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:25 Heat of formation + Delta-G solvation = -28.087499 kcal Electronic energy + Delta-G solvation = -24616.775830 eV Core-core repulsion = 20598.256377 eV Total energy + Delta-G solvation = -4018.519453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.37633 -40.19421 -39.20459 -36.24800 -35.63024 -34.05407 -33.99647 -32.44413 -32.06351 -30.29682 -28.36949 -28.18967 -25.75226 -25.43071 -23.50961 -22.81894 -21.17425 -20.34610 -20.11645 -18.17773 -17.95849 -17.79957 -17.27946 -16.63411 -16.43214 -15.89389 -15.64009 -15.61629 -15.03761 -14.81500 -14.64968 -14.26960 -14.16506 -13.89906 -13.86724 -13.62981 -13.24277 -13.19319 -12.84616 -12.70487 -12.58278 -12.43433 -12.05836 -12.03265 -11.68424 -11.37726 -11.07367 -11.03910 -10.77945 -10.55808 -10.27301 -9.83759 -9.79352 -9.51580 -9.50990 -9.09404 -9.01596 -8.26532 -6.52355 -6.23267 -3.94167 0.98931 1.73390 2.23625 2.51772 2.63911 3.01510 3.10638 3.21770 3.28082 3.33656 3.65880 3.75837 3.93246 4.18949 4.28195 4.39917 4.48206 4.57266 4.62461 4.73213 4.79163 4.79231 4.93198 5.03249 5.09945 5.12189 5.13314 5.17220 5.24720 5.43384 5.50449 5.55132 5.60183 5.64924 5.72850 5.85883 5.96636 6.11060 6.46752 7.03027 7.57497 7.59311 7.78791 7.82142 8.33758 8.51425 9.22256 10.84213 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.050659 B = 0.001211 C = 0.001193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.578235 B =23123.678043 C =23470.795888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.032 4.032 3 C -0.233 4.233 4 C 0.021 3.979 5 C -0.025 4.025 6 C -0.136 4.136 7 C 0.517 3.483 8 O -0.539 6.539 9 N -0.727 5.727 10 C 0.108 3.892 11 C 0.111 3.889 12 N -0.737 5.737 13 C 0.534 3.466 14 O -0.516 6.516 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 N -0.364 5.364 26 O 0.098 5.902 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.172 0.828 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.405 0.595 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.401 0.599 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.630 -2.672 -16.008 37.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 C -0.255 4.255 4 C -0.137 4.137 5 C -0.063 4.063 6 C -0.177 4.177 7 C 0.303 3.697 8 O -0.416 6.416 9 N -0.380 5.380 10 C -0.016 4.016 11 C -0.014 4.014 12 N -0.393 5.393 13 C 0.320 3.680 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 N -0.068 5.068 26 O 0.032 5.968 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.189 0.811 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.240 0.760 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.235 0.765 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -32.879 -4.562 -15.011 36.430 hybrid contribution 0.903 2.415 -1.114 2.809 sum -31.976 -2.147 -16.125 35.876 Atomic orbital electron populations 1.20363 0.83962 1.04805 1.04200 1.24543 0.96462 0.86194 1.02314 1.22451 0.91301 1.01143 1.10574 1.23574 0.97355 0.90074 1.02738 1.19719 0.88404 0.99018 0.99195 1.21615 0.93432 1.01807 1.00803 1.20566 0.85216 0.82920 0.80955 1.90733 1.79106 1.34783 1.36930 1.45816 1.17965 1.43674 1.30520 1.21468 0.84207 0.97026 0.98892 1.21317 0.85044 0.97277 0.97781 1.45809 1.17581 1.44444 1.31429 1.20332 0.84598 0.82614 0.80426 1.90709 1.78257 1.33917 1.36070 1.23531 0.96523 1.02845 1.07522 1.85391 1.14340 1.54567 1.29034 1.22870 1.03166 1.26510 1.15905 0.90879 1.24987 0.98339 0.95741 0.94446 1.70016 1.31821 1.34761 1.13714 0.86164 0.80857 0.79884 0.78587 1.20254 1.20731 1.19670 1.73843 0.96931 1.16300 1.19715 1.84840 1.11310 1.33207 1.67453 0.89808 0.89054 0.89099 0.81081 0.88626 0.88915 0.88076 0.88446 0.76028 0.90600 0.90593 0.90927 0.90925 0.76479 0.89047 0.89053 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.11 10.45 36.01 0.38 0.26 16 2 C -0.03 -0.17 7.49 -35.31 -0.26 -0.44 16 3 C -0.23 -1.37 11.05 -39.38 -0.44 -1.80 16 4 C 0.02 0.16 6.59 -82.10 -0.54 -0.38 16 5 C -0.02 -0.18 5.10 -27.89 -0.14 -0.32 16 6 C -0.14 -0.87 5.67 -27.88 -0.16 -1.03 16 7 C 0.52 4.53 7.83 -10.98 -0.09 4.45 16 8 O -0.54 -6.69 15.98 5.56 0.09 -6.60 16 9 N -0.73 -5.38 5.56 -60.29 -0.33 -5.71 16 10 C 0.11 0.92 5.79 -4.04 -0.02 0.89 16 11 C 0.11 1.14 5.79 -4.05 -0.02 1.11 16 12 N -0.74 -9.20 5.56 -60.30 -0.34 -9.53 16 13 C 0.53 9.63 7.85 -10.99 -0.09 9.54 16 14 O -0.52 -11.36 15.86 5.56 0.09 -11.28 16 15 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 16 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 17 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 18 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 21 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 N -0.36 -3.40 12.06 33.42 0.40 -3.00 16 26 O 0.10 0.80 11.20 17.17 0.19 0.99 16 27 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 29 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.10 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.41 2.08 8.47 -40.82 -0.35 1.73 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.40 3.88 8.47 -40.82 -0.35 3.53 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -38.09 392.50 -7.60 -45.69 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.15 Total: -0.21 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -0.96 Total: -3.40 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.47 Total: -43.58 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.37 Total: -16.89 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.09 -7.60 -45.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757918839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.598 kcal (2) G-P(sol) polarization free energy of solvation -38.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds