Wall clock time and date at job start Sat Apr 11 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35444 * 126.78078 * 2 1 4 4 C 1.41385 * 103.98584 * 180.13620 * 3 2 1 5 5 C 1.50696 * 126.79826 * 179.89030 * 4 3 2 6 6 C 1.52998 * 109.46969 * 124.71497 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00081 * 179.72561 * 7 6 5 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47161 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47167 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00344 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99845 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00458 * 179.97438 * 13 12 11 16 16 S 1.80992 * 109.47507 * 179.97438 * 15 13 12 17 17 C 1.76196 * 100.00260 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00197 * 180.02562 * 17 16 15 20 20 N 1.31628 * 119.99870 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00268 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47104 * 89.99643 * 21 19 17 23 23 H 1.48501 * 109.47475 * 209.99807 * 21 19 17 24 24 H 1.48499 * 109.47159 * 329.99966 * 21 19 17 25 25 N 1.30177 * 106.39418 * 359.63009 * 4 3 2 26 26 O 1.20919 * 111.60380 * 0.23643 * 25 4 3 27 27 H 1.09000 * 109.47590 * 180.29586 * 1 2 3 28 28 H 1.09003 * 109.47327 * 300.30134 * 1 2 3 29 29 H 1.09006 * 109.46903 * 60.29870 * 1 2 3 30 30 H 1.07997 * 128.00991 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47664 * 4.71425 * 5 4 3 32 32 H 1.09002 * 109.46824 * 244.70896 * 5 4 3 33 33 H 1.09001 * 109.47671 * 59.99812 * 6 5 4 34 34 H 1.08998 * 109.47454 * 299.99809 * 6 5 4 35 35 H 0.96998 * 120.00525 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.46587 * 299.99661 * 10 9 7 37 37 H 1.08998 * 109.47213 * 59.99069 * 10 9 7 38 38 H 1.09004 * 109.47116 * 299.99365 * 11 10 9 39 39 H 1.08993 * 109.47352 * 59.99609 * 11 10 9 40 40 H 0.97004 * 120.00009 * 359.97438 * 12 11 10 41 41 H 1.08999 * 109.47405 * 300.00193 * 15 13 12 42 42 H 1.09006 * 109.46765 * 59.99515 * 15 13 12 43 43 H 0.97004 * 119.99966 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5370 -0.0033 5 6 4.9211 1.2998 -0.0070 6 6 5.7798 0.8498 1.1767 7 6 7.0799 1.6121 1.1727 8 8 7.2982 2.4340 0.3079 9 7 7.9977 1.3840 2.1329 10 6 9.2613 2.1255 2.1293 11 6 10.1169 1.6808 3.3171 12 7 11.3806 2.4218 3.3132 13 6 12.2986 2.1937 4.2733 14 8 12.0782 1.3754 5.1408 15 6 13.5988 2.9555 4.2690 16 16 14.6110 2.4295 5.6742 17 6 16.0267 3.4498 5.4305 18 1 16.0618 4.1344 4.5959 19 6 17.0968 3.3739 6.3112 20 7 17.0538 2.5400 7.3288 21 14 18.5979 4.4551 6.0525 22 1 18.4142 5.7386 6.7764 23 1 19.8033 3.7614 6.5731 24 1 18.7697 4.7249 4.6024 25 7 3.4763 -0.7566 0.0032 26 8 2.3094 -1.0737 0.0052 27 1 -0.3634 -1.0276 0.0053 28 1 -0.3634 0.5185 0.8873 29 1 -0.3633 0.5092 -0.8927 30 1 2.0346 2.1270 0.0004 31 1 4.7164 2.3670 0.0777 32 1 5.4541 1.1047 -0.9375 33 1 5.9846 -0.2175 1.0921 34 1 5.2468 1.0448 2.1072 35 1 7.8214 0.7296 2.8268 36 1 9.7965 1.9266 1.2008 37 1 9.0563 3.1931 2.2090 38 1 9.5814 1.8800 4.2454 39 1 10.3218 0.6132 3.2378 40 1 11.5571 3.0760 2.6191 41 1 14.1338 2.7559 3.3405 42 1 13.3945 4.0233 4.3482 43 1 17.8015 2.4872 7.9445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757918839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:24 Heat of formation + Delta-G solvation = -56.769669 kcal Electronic energy + Delta-G solvation = -24618.019582 eV Core-core repulsion = 20598.256377 eV Total energy + Delta-G solvation = -4019.763205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.89609 -40.98960 -40.51999 -37.11348 -36.27611 -35.05513 -34.58253 -34.40226 -32.67590 -31.55990 -29.34307 -28.62233 -27.65944 -26.32989 -24.03320 -23.62713 -22.11383 -21.42029 -20.62051 -19.87086 -18.70915 -18.42252 -17.99526 -17.88810 -17.20843 -16.99254 -16.87166 -16.71733 -16.60346 -15.71798 -15.69724 -15.48690 -14.83224 -14.71581 -14.67993 -14.41469 -14.30451 -13.94225 -13.69366 -13.60464 -13.35019 -13.16502 -13.10165 -12.92276 -12.89444 -12.84221 -12.60212 -12.52918 -11.87043 -11.73557 -11.22123 -11.14172 -11.05054 -10.87792 -10.28018 -10.27462 -10.22682 -10.14876 -8.66498 -8.34812 -6.12671 0.53719 1.22005 1.26454 1.42668 1.45245 1.54433 1.55942 1.57761 1.87851 2.26516 2.27434 2.53731 2.99715 3.18321 3.32178 3.49093 3.58878 3.76347 3.98476 3.99511 4.05901 4.08690 4.19372 4.30881 4.36672 4.41482 4.49681 4.52251 4.60376 4.76063 4.79587 4.83778 4.85446 4.92165 4.96931 5.12213 5.24559 5.28903 5.38120 5.42278 6.19936 6.39052 6.45506 7.06927 7.13003 7.18837 7.32491 8.74445 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.050659 B = 0.001211 C = 0.001193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.578235 B =23123.678043 C =23470.795888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.027 4.027 3 C -0.243 4.243 4 C 0.013 3.987 5 C -0.022 4.022 6 C -0.126 4.126 7 C 0.519 3.481 8 O -0.577 6.577 9 N -0.719 5.719 10 C 0.119 3.881 11 C 0.115 3.885 12 N -0.712 5.712 13 C 0.537 3.463 14 O -0.562 6.562 15 C -0.131 4.131 16 S -0.150 6.150 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.258 1.258 25 N -0.396 5.396 26 O 0.080 5.920 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.194 0.806 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.417 0.583 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.418 0.582 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.883 -1.234 -17.312 38.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 C -0.265 4.265 4 C -0.145 4.145 5 C -0.061 4.061 6 C -0.167 4.167 7 C 0.306 3.694 8 O -0.457 6.457 9 N -0.372 5.372 10 C -0.005 4.005 11 C -0.009 4.009 12 N -0.367 5.367 13 C 0.323 3.677 14 O -0.440 6.440 15 C -0.282 4.282 16 S 0.077 5.923 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.182 1.182 25 N -0.104 5.104 26 O 0.016 5.984 27 H 0.109 0.891 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.211 0.789 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.254 0.746 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.256 0.744 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -34.182 -3.125 -16.347 38.018 hybrid contribution 1.129 1.960 -0.789 2.395 sum -33.053 -1.166 -17.135 37.249 Atomic orbital electron populations 1.20583 0.81135 1.05799 1.05715 1.25277 0.97935 0.85342 1.00495 1.22788 0.90475 1.02401 1.10795 1.23794 0.98271 0.89958 1.02472 1.19678 0.88272 0.99287 0.98823 1.21564 0.92210 1.01460 1.01427 1.20908 0.85776 0.82367 0.80317 1.90719 1.79919 1.36603 1.38447 1.45744 1.17319 1.43552 1.30566 1.21290 0.84287 0.97179 0.97784 1.21383 0.83959 0.96913 0.98686 1.45515 1.17138 1.44038 1.30013 1.20014 0.84797 0.81980 0.80927 1.90700 1.79097 1.35972 1.38241 1.23380 0.96345 1.03995 1.04529 1.85548 1.16558 1.56059 1.34123 1.23217 1.03490 1.26542 1.16287 0.89896 1.26099 1.01849 0.97119 0.93905 1.70178 1.33020 1.36703 1.14890 0.84971 0.76212 0.77740 0.79176 1.19304 1.20318 1.18233 1.73833 0.97786 1.17237 1.21503 1.84793 1.11340 1.34333 1.67894 0.89129 0.87368 0.87482 0.78865 0.88075 0.90319 0.87731 0.86553 0.74562 0.90650 0.90356 0.90838 0.91052 0.74440 0.87080 0.87004 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.06 10.45 71.24 0.74 0.68 16 2 C -0.03 -0.26 7.49 25.04 0.19 -0.07 16 3 C -0.24 -2.54 11.05 22.40 0.25 -2.30 16 4 C 0.01 0.20 6.59 43.58 0.29 0.49 16 5 C -0.02 -0.30 5.10 29.85 0.15 -0.15 16 6 C -0.13 -1.47 5.67 29.85 0.17 -1.31 16 7 C 0.52 8.47 7.83 87.66 0.69 9.16 16 8 O -0.58 -13.92 15.98 -3.04 -0.05 -13.97 16 9 N -0.72 -9.40 5.56 -463.05 -2.57 -11.97 16 10 C 0.12 1.78 5.79 86.38 0.50 2.28 16 11 C 0.11 2.15 5.79 86.38 0.50 2.65 16 12 N -0.71 -16.31 5.56 -463.09 -2.57 -18.88 16 13 C 0.54 18.82 7.85 87.66 0.69 19.51 16 14 O -0.56 -24.93 15.86 -3.03 -0.05 -24.98 16 15 C -0.13 -5.03 6.16 71.23 0.44 -4.60 16 16 S -0.15 -8.22 20.57 -56.49 -1.16 -9.38 16 17 C -0.55 -31.03 9.50 67.95 0.65 -30.39 16 18 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 19 C 0.02 0.85 5.49 84.86 0.47 1.32 16 20 N -0.91 -55.74 13.22 21.65 0.29 -55.45 16 21 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 25 N -0.40 -7.43 12.06 -49.56 -0.60 -8.02 16 26 O 0.08 1.30 11.20 71.60 0.80 2.10 16 27 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.11 -0.21 8.14 -2.38 -0.02 -0.23 16 30 H 0.19 0.95 8.06 -2.91 -0.02 0.92 16 31 H 0.10 1.24 8.09 -2.39 -0.02 1.22 16 32 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.42 3.49 8.47 -92.71 -0.79 2.70 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.42 6.89 8.47 -92.71 -0.79 6.10 16 41 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 42 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -85.08 392.50 1.31 -83.78 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -0.52 Total: 14.12 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 5.71 Total: -2.72 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -5.46 Total: -94.32 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: 0.70 Total: -36.85 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.38 kcal Total: -85.08 1.31 -83.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757918839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.008 kcal (2) G-P(sol) polarization free energy of solvation -85.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds