Wall clock time and date at job start Sat Apr 11 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34258 * 126.52336 * 2 1 4 4 C 1.34050 * 108.22690 * 179.97438 * 3 2 1 5 5 N 1.29939 * 109.24394 * 359.74607 * 4 3 2 6 6 C 1.36072 * 108.47459 * 0.40304 * 5 4 3 7 7 C 1.47417 * 126.44733 * 179.85743 * 6 5 4 8 8 O 1.21613 * 119.99925 * 179.69165 * 7 6 5 9 9 N 1.34777 * 120.00113 * 359.69684 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27547 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 C 1.53003 * 109.47301 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.46851 * 55.00107 * 12 11 10 14 14 C 1.53000 * 109.47041 * 174.99629 * 12 11 10 15 15 N 1.46498 * 109.47202 * 294.99767 * 12 11 10 16 16 C 1.34773 * 119.99864 * 154.99768 * 15 12 11 17 17 O 1.21278 * 120.00284 * 359.97438 * 16 15 12 18 18 C 1.50699 * 119.99853 * 180.02562 * 16 15 12 19 19 S 1.81000 * 109.47356 * 180.02562 * 18 16 15 20 20 C 1.76195 * 100.00219 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99955 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99887 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99615 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00048 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47058 * 89.99968 * 24 22 20 26 26 H 1.48498 * 109.46885 * 209.99436 * 24 22 20 27 27 H 1.48497 * 109.47142 * 329.99785 * 24 22 20 28 28 H 1.08997 * 109.47435 * 270.04380 * 1 2 3 29 29 H 1.09004 * 109.46975 * 30.04200 * 1 2 3 30 30 H 1.08992 * 109.46749 * 150.04121 * 1 2 3 31 31 H 1.07996 * 125.38090 * 180.02562 * 4 3 2 32 32 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 33 33 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 34 34 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 35 35 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 36 36 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 37 37 H 1.09003 * 109.47089 * 180.02562 * 14 12 11 38 38 H 1.09000 * 109.47427 * 299.99741 * 14 12 11 39 39 H 1.09003 * 109.47155 * 60.00174 * 14 12 11 40 40 H 0.97004 * 119.99596 * 335.00212 * 15 12 11 41 41 H 1.09007 * 109.47053 * 299.99939 * 18 16 15 42 42 H 1.08999 * 109.47632 * 59.99584 * 18 16 15 43 43 H 0.97007 * 120.00079 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6581 0.0006 5 7 3.6003 -0.6411 0.0064 6 6 2.3170 -1.0936 0.0006 7 6 1.8854 -2.5032 0.0012 8 8 0.7003 -2.7762 0.0013 9 7 2.8042 -3.4893 0.0018 10 6 2.3752 -4.8900 -0.0037 11 6 3.6051 -5.8000 -0.0088 12 6 3.1572 -7.2630 -0.0139 13 1 2.4862 -7.4345 -0.8555 14 6 4.3817 -8.1709 -0.1447 15 7 2.4577 -7.5639 1.2377 16 6 1.5582 -8.5666 1.2826 17 8 1.3276 -9.2195 0.2870 18 6 0.8382 -8.8758 2.5699 19 16 -0.2938 -10.2639 2.3098 20 6 -0.9802 -10.4061 3.9263 21 1 -0.6611 -9.7344 4.7094 22 6 -1.9318 -11.3808 4.1929 23 7 -2.4441 -11.4873 5.4007 24 14 -2.4841 -12.5422 2.8381 25 1 -1.6141 -13.7456 2.8325 26 1 -3.8915 -12.9501 3.0792 27 1 -2.3860 -11.8542 1.5258 28 1 -0.3634 0.0008 1.0276 29 1 -0.3633 0.8896 -0.5145 30 1 -0.3632 -0.8903 -0.5132 31 1 4.4489 1.2978 0.0011 32 1 3.7494 -3.2714 0.0014 33 1 1.7784 -5.0907 0.8861 34 1 1.7766 -5.0833 -0.8939 35 1 4.2019 -5.5993 -0.8986 36 1 4.2038 -5.6068 0.8814 37 1 4.0626 -9.2131 -0.1488 38 1 4.9022 -7.9470 -1.0759 39 1 5.0528 -7.9993 0.6969 40 1 2.6418 -7.0414 2.0339 41 1 1.5650 -9.1392 3.3385 42 1 0.2729 -8.0003 2.8894 43 1 -3.1089 -12.1688 5.5872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758855512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:34 Heat of formation + Delta-G solvation = -63.503534 kcal Electronic energy + Delta-G solvation = -25999.039639 eV Core-core repulsion = 21978.984431 eV Total energy + Delta-G solvation = -4020.055208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.91619 -39.95842 -39.41137 -36.71807 -35.35298 -34.69882 -32.83522 -32.41701 -31.91283 -29.71015 -28.59997 -27.70443 -25.59068 -24.84496 -23.38614 -22.13782 -21.65803 -20.79333 -20.40648 -18.66818 -17.82185 -17.38332 -16.68900 -16.64749 -16.36107 -16.00910 -15.52683 -15.17951 -14.99678 -14.92182 -14.52683 -14.26617 -13.81314 -13.73131 -13.60440 -13.47143 -13.35241 -12.95845 -12.87410 -12.77195 -12.24967 -12.04050 -11.94892 -11.71479 -11.59374 -11.31043 -11.24028 -11.13313 -10.98728 -10.57722 -10.42758 -9.83455 -9.54941 -9.48743 -9.26873 -9.01038 -8.95851 -8.47501 -6.88962 -6.26630 -3.98013 0.64543 1.56946 2.07443 2.74570 2.78942 2.94045 2.99715 3.32194 3.35893 3.52802 3.55056 3.67779 4.15997 4.33187 4.35393 4.42870 4.64461 4.70764 4.72168 4.79498 4.94447 5.04807 5.12402 5.19755 5.23291 5.30664 5.35303 5.37560 5.54275 5.56337 5.59866 5.62152 5.74169 5.79579 5.94367 6.04650 6.06899 6.12861 6.58179 6.86382 7.20434 7.62236 7.82701 7.96468 8.44112 8.51508 9.19588 10.82619 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002018 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.672835 B =13870.550628 C =15200.072394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.049 3.951 3 O -0.200 6.200 4 C 0.175 3.825 5 N -0.465 5.465 6 C -0.082 4.082 7 C 0.601 3.399 8 O -0.528 6.528 9 N -0.714 5.714 10 C 0.117 3.883 11 C -0.138 4.138 12 C 0.147 3.853 13 H 0.092 0.908 14 C -0.163 4.163 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.256 0.744 32 H 0.408 0.592 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.399 0.601 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.286 26.171 -12.015 33.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.008 4.008 3 O -0.086 6.086 4 C -0.054 4.054 5 N -0.194 5.194 6 C -0.202 4.202 7 C 0.386 3.614 8 O -0.405 6.405 9 N -0.365 5.365 10 C -0.006 4.006 11 C -0.176 4.176 12 C 0.042 3.958 13 H 0.110 0.890 14 C -0.221 4.221 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.271 0.729 32 H 0.243 0.757 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.233 0.767 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.453 24.396 -13.552 31.901 hybrid contribution 0.231 1.083 1.334 1.734 sum 15.684 25.479 -12.218 32.318 Atomic orbital electron populations 1.20658 0.82368 1.05619 1.05017 1.23841 0.95327 0.83289 0.98320 1.84397 1.18591 1.36291 1.69340 1.28008 0.85322 0.91171 1.00891 1.70713 1.21691 1.10270 1.16704 1.21466 0.88897 0.95572 1.14259 1.16689 0.85516 0.82586 0.76578 1.90840 1.16184 1.83181 1.50286 1.45762 1.10165 1.05983 1.74576 1.21479 0.97035 0.78581 1.03553 1.22111 0.97566 0.93997 1.03945 1.20787 0.94299 0.92312 0.88423 0.89006 1.22172 0.97216 1.00997 1.01733 1.46097 1.43404 1.36306 1.13047 1.20261 0.78456 0.79182 0.90212 1.90695 1.63643 1.48768 1.36173 1.23289 1.02208 1.04545 0.97522 1.84772 1.48854 1.39296 1.18611 1.22323 1.27982 1.22316 0.94206 0.89404 1.24722 0.94610 0.96431 0.95621 1.69943 1.28106 1.33919 1.19766 0.86727 0.78758 0.82290 0.84023 1.19242 1.19971 1.15899 0.88686 0.89956 0.86771 0.72885 0.75662 0.90575 0.90810 0.89593 0.90451 0.91474 0.91802 0.92436 0.76736 0.88556 0.88462 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 9.88 36.01 0.36 -0.18 16 2 C 0.05 0.42 7.44 -35.08 -0.26 0.16 16 3 O -0.20 -1.41 10.73 6.51 0.07 -1.34 16 4 C 0.17 0.94 13.19 51.96 0.69 1.63 16 5 N -0.46 -3.87 11.06 -11.48 -0.13 -4.00 16 6 C -0.08 -0.81 6.99 -83.02 -0.58 -1.39 16 7 C 0.60 6.80 7.81 -12.52 -0.10 6.71 16 8 O -0.53 -7.42 14.80 5.27 0.08 -7.34 16 9 N -0.71 -6.44 5.55 -61.39 -0.34 -6.78 16 10 C 0.12 1.08 5.56 -4.04 -0.02 1.05 16 11 C -0.14 -0.96 4.87 -26.73 -0.13 -1.09 16 12 C 0.15 1.49 2.57 -67.93 -0.17 1.31 16 13 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 14 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 15 N -0.73 -8.83 4.53 -53.81 -0.24 -9.07 16 16 C 0.53 9.26 7.81 -10.99 -0.09 9.18 16 17 O -0.52 -10.96 15.52 5.56 0.09 -10.87 16 18 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 19 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 20 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 21 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 22 C 0.09 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.81 13.97 55.49 0.78 -26.04 16 24 Si 0.86 22.01 27.74 -169.99 -4.72 17.30 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.11 0.94 6.48 -51.93 -0.34 0.60 16 31 H 0.26 0.01 8.06 -52.49 -0.42 -0.41 16 32 H 0.41 2.96 8.20 -40.82 -0.33 2.62 16 33 H 0.08 0.82 7.75 -51.93 -0.40 0.41 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.40 3.79 8.60 -40.82 -0.35 3.43 16 41 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 42 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -37.69 385.14 -6.18 -43.86 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.05 Total: 2.25 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 0.48 Total: 1.85 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.06 Total: -45.89 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: 0.23 Total: -19.56 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.72 Total: 17.30 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.69 -6.18 -43.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758855512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.642 kcal (2) G-P(sol) polarization free energy of solvation -37.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds