Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47157 * 240.00399 * 3 2 1 5 5 H 1.48496 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46802 * 120.00663 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.47062 * 136.06053 * 359.34957 * 13 11 10 15 15 C 1.53749 * 87.88863 * 152.96825 * 14 13 11 16 16 N 1.46505 * 114.09025 * 139.78132 * 15 14 13 17 17 C 1.34776 * 120.00122 * 111.55774 * 16 15 14 18 18 O 1.21289 * 119.99654 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99938 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.46779 * 180.02562 * 19 17 16 21 21 H 1.08996 * 110.43801 * 54.29716 * 20 19 17 22 22 C 1.54632 * 110.48498 * 176.84237 * 20 19 17 23 23 C 1.54684 * 101.67093 * 143.39100 * 22 20 19 24 24 N 1.46769 * 105.53271 * 334.74017 * 23 22 20 25 25 C 1.34414 * 111.30036 * 16.92179 * 24 23 22 26 26 O 1.21289 * 124.93809 * 179.55765 * 25 24 23 27 27 C 1.47070 * 136.05212 * 179.73146 * 13 11 10 28 28 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 30 30 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 31 31 H 1.08998 * 113.46736 * 267.69995 * 14 13 11 32 32 H 1.08998 * 113.46422 * 38.13624 * 14 13 11 33 33 H 1.09000 * 114.39692 * 272.68057 * 15 14 13 34 34 H 0.97003 * 119.99792 * 291.56461 * 16 15 14 35 35 H 1.09006 * 109.46804 * 300.00071 * 19 17 16 36 36 H 1.08996 * 109.47072 * 60.00158 * 19 17 16 37 37 H 1.08994 * 110.96634 * 261.59606 * 22 20 19 38 38 H 1.09000 * 110.96754 * 25.34978 * 22 20 19 39 39 H 1.09000 * 110.29380 * 215.68020 * 23 22 20 40 40 H 1.08994 * 110.13919 * 93.71623 * 23 22 20 41 41 H 0.97002 * 124.34771 * 196.90004 * 24 23 22 42 42 H 1.08996 * 113.46675 * 321.85429 * 27 13 11 43 43 H 1.08990 * 113.47047 * 92.24216 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 4.3051 -6.5118 -0.0033 15 6 4.0956 -7.8587 0.7080 16 7 4.9751 -8.9294 0.2322 17 6 5.9408 -9.4157 1.0367 18 8 6.0815 -8.9672 2.1548 19 6 6.8459 -10.5168 0.5470 20 6 7.8451 -10.8823 1.6465 21 1 7.3215 -11.1280 2.5703 22 6 8.7349 -12.0647 1.1977 23 6 10.0981 -11.6852 1.8226 24 7 10.0723 -10.2246 1.9648 25 6 8.8189 -9.7474 1.8755 26 8 8.5131 -8.5772 1.9661 27 6 2.7295 -7.8093 0.0096 28 1 -0.4851 0.8400 0.0004 29 1 3.1252 -3.7317 0.8875 30 1 3.1238 -3.7309 -0.8925 31 1 4.7264 -6.6103 -1.0037 32 1 4.8297 -5.7750 0.6049 33 1 4.0447 -7.7908 1.7947 34 1 4.8623 -9.2883 -0.6619 35 1 6.2483 -11.3925 0.2937 36 1 7.3857 -10.1772 -0.3369 37 1 8.3660 -13.0065 1.6038 38 1 8.8036 -12.1106 0.1109 39 1 10.9127 -11.9857 1.1636 40 1 10.2079 -12.1573 2.7988 41 1 10.8587 -9.6745 2.1055 42 1 1.9118 -8.1779 0.6290 43 1 2.7345 -8.2497 -0.9873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759200036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = -62.407328 kcal Electronic energy + Delta-G solvation = -26213.479618 eV Core-core repulsion = 22193.471945 eV Total energy + Delta-G solvation = -4020.007672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.08921 -40.46227 -39.05745 -37.46306 -36.64494 -34.00268 -33.42286 -32.40042 -30.39999 -29.47292 -27.76359 -26.17328 -26.00566 -25.39039 -22.45984 -22.20415 -21.02821 -20.04973 -19.02635 -17.78154 -17.70732 -17.35536 -17.04177 -16.83088 -16.49422 -15.67781 -15.32196 -15.03543 -14.77461 -14.72389 -14.22927 -14.04655 -14.02948 -13.77312 -13.54166 -13.21591 -12.95769 -12.87815 -12.79664 -12.61113 -12.43700 -12.31554 -11.98371 -11.76559 -11.53240 -11.23221 -11.00795 -11.00376 -10.74439 -10.17942 -9.86603 -9.80659 -9.49811 -9.46588 -9.23667 -9.03081 -8.63236 -8.22348 -6.47945 -6.18682 -3.89550 2.33765 2.44973 2.55012 2.92823 2.96446 3.15110 3.26687 3.29116 3.32205 3.60134 3.83554 3.86555 4.13745 4.15699 4.23290 4.36294 4.59636 4.62639 4.71416 4.82084 4.88870 4.92447 4.98516 5.03882 5.15808 5.16380 5.24200 5.24338 5.43375 5.49931 5.50739 5.60765 5.75701 5.92740 5.97771 6.18670 6.24544 6.43028 6.64621 7.20534 7.62574 7.83452 7.97421 8.05654 8.38259 8.52809 9.26417 10.88723 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.001873 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.874371 B =14942.645834 C =16184.194443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.145 4.145 11 C 0.567 3.433 12 O -0.512 6.512 13 N -0.649 5.649 14 C 0.086 3.914 15 C 0.114 3.886 16 N -0.722 5.722 17 C 0.511 3.489 18 O -0.507 6.507 19 C -0.124 4.124 20 C -0.110 4.110 21 H 0.117 0.883 22 C -0.131 4.131 23 C 0.101 3.899 24 N -0.741 5.741 25 C 0.516 3.484 26 O -0.499 6.499 27 C 0.097 3.903 28 H 0.269 0.731 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.132 0.868 34 H 0.401 0.599 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.409 0.591 42 H 0.084 0.916 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.619 -31.235 -0.937 37.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.295 4.295 11 C 0.357 3.643 12 O -0.386 6.386 13 N -0.389 5.389 14 C -0.039 4.039 15 C 0.008 3.992 16 N -0.375 5.375 17 C 0.296 3.704 18 O -0.379 6.379 19 C -0.164 4.164 20 C -0.132 4.132 21 H 0.135 0.865 22 C -0.169 4.169 23 C -0.023 4.023 24 N -0.399 5.399 25 C 0.301 3.699 26 O -0.371 6.371 27 C -0.027 4.027 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.150 0.850 34 H 0.236 0.764 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.248 0.752 42 H 0.103 0.897 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 19.316 -30.305 -0.058 35.937 hybrid contribution 2.419 1.268 -0.533 2.782 sum 21.735 -29.037 -0.590 36.275 Atomic orbital electron populations 1.70011 1.05939 1.27560 1.46806 1.24991 0.95042 0.99014 0.94510 0.86212 0.79222 0.81168 0.78837 1.19939 1.20799 1.19901 1.22825 0.94909 0.91569 1.59058 0.90934 1.85365 1.04844 0.96327 1.96741 1.23481 1.06553 0.94450 1.05042 1.19918 0.85142 0.84767 0.74514 1.90719 1.14710 1.84821 1.48329 1.49351 1.07874 1.05759 1.75898 1.23521 0.82410 0.97032 1.00899 1.22855 0.89216 0.86278 1.00890 1.45765 1.34374 1.39103 1.18267 1.20496 0.80628 0.83489 0.85746 1.90798 1.68669 1.58851 1.19632 1.21535 0.97114 0.98598 0.99163 1.21738 0.95696 0.94764 1.01027 0.86522 1.22755 0.93844 0.98252 1.02005 1.22053 0.98508 0.80642 1.01139 1.46256 1.09359 1.08716 1.75584 1.20725 0.83650 0.89623 0.75897 1.90855 1.80286 1.17859 1.48124 1.23204 0.97217 0.81803 1.00476 0.92132 0.89100 0.89251 0.89717 0.89670 0.85014 0.76446 0.87686 0.88539 0.88831 0.89633 0.90256 0.91101 0.75227 0.89742 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.67 13.22 55.49 0.73 -25.93 16 2 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 3 Si 0.92 21.96 29.55 -169.99 -5.02 16.93 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -15.71 9.50 30.94 0.29 -15.42 16 8 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.14 -3.15 5.98 36.01 0.22 -2.94 16 11 C 0.57 11.56 8.10 -10.98 -0.09 11.47 16 12 O -0.51 -12.38 16.64 5.55 0.09 -12.29 16 13 N -0.65 -9.84 3.69 -185.08 -0.68 -10.52 16 14 C 0.09 1.01 8.24 -8.37 -0.07 0.94 16 15 C 0.11 1.16 4.62 -67.68 -0.31 0.85 16 16 N -0.72 -5.33 5.39 -53.48 -0.29 -5.62 16 17 C 0.51 4.71 7.28 -10.98 -0.08 4.63 16 18 O -0.51 -7.20 13.46 -16.81 -0.23 -7.43 16 19 C -0.12 -0.59 5.10 -27.88 -0.14 -0.73 16 20 C -0.11 -0.62 2.55 -90.63 -0.23 -0.85 16 21 H 0.12 0.75 7.96 -51.93 -0.41 0.34 16 22 C -0.13 -0.22 6.72 -24.99 -0.17 -0.39 16 23 C 0.10 0.23 7.79 -3.01 -0.02 0.20 16 24 N -0.74 -4.30 6.24 -59.09 -0.37 -4.67 16 25 C 0.52 4.87 7.70 -10.86 -0.08 4.78 16 26 O -0.50 -7.42 15.39 -16.81 -0.26 -7.68 16 27 C 0.10 1.06 8.38 -8.50 -0.07 0.99 16 28 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.09 1.88 8.14 -51.91 -0.42 1.45 16 30 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.13 1.61 7.45 -51.93 -0.39 1.23 16 34 H 0.40 1.60 8.76 -40.82 -0.36 1.24 16 35 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.09 0.06 7.91 -51.93 -0.41 -0.36 16 39 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 41 H 0.41 2.03 8.96 -40.82 -0.37 1.66 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -42.12 379.63 -9.50 -51.62 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.13 Total: -1.84 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -0.86 Total: 5.59 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.61 Total: -46.74 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.39 Total: -27.40 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -42.12 -9.50 -51.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759200036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.791 kcal (2) G-P(sol) polarization free energy of solvation -42.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds