Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00188 * 2 1 4 4 H 1.48502 * 109.46762 * 270.00184 * 3 2 1 5 5 H 1.48498 * 109.46667 * 29.99426 * 3 2 1 6 6 H 1.48490 * 109.47482 * 149.99866 * 3 2 1 7 7 C 1.38803 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00126 * 0.02562 * 7 2 1 9 9 S 1.76192 * 120.00004 * 180.02562 * 7 2 1 10 10 C 1.81008 * 100.00015 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47092 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99916 * 180.02562 * 11 10 9 14 14 C 1.47584 * 134.49239 * 180.02562 * 13 11 10 15 15 C 1.53950 * 86.11406 * 155.35069 * 14 13 11 16 16 N 1.46504 * 113.73947 * 137.95163 * 15 14 13 17 17 C 1.34771 * 119.99855 * 156.92214 * 16 15 14 18 18 O 1.21280 * 120.00118 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99982 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47207 * 180.02562 * 19 17 16 21 21 H 1.09002 * 110.43437 * 305.69925 * 20 19 17 22 22 C 1.54627 * 110.59793 * 183.08070 * 20 19 17 23 23 C 1.54486 * 101.76521 * 266.06241 * 22 20 19 24 24 N 1.46757 * 105.47179 * 334.58397 * 23 22 20 25 25 C 1.34422 * 111.30497 * 17.01651 * 24 23 22 26 26 O 1.21273 * 124.94668 * 179.62647 * 25 24 23 27 27 C 1.47814 * 134.45675 * 359.85313 * 13 11 10 28 28 H 0.96996 * 120.00760 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.46865 * 60.00057 * 10 9 7 30 30 H 1.09002 * 109.46851 * 299.99813 * 10 9 7 31 31 H 1.08995 * 113.77066 * 41.04940 * 14 13 11 32 32 H 1.08999 * 113.86787 * 269.66482 * 14 13 11 33 33 H 1.08995 * 113.73980 * 269.14852 * 15 14 13 34 34 H 0.97000 * 119.99932 * 336.92576 * 16 15 14 35 35 H 1.08994 * 109.47174 * 59.99869 * 19 17 16 36 36 H 1.09002 * 109.46931 * 300.00172 * 19 17 16 37 37 H 1.08999 * 110.97081 * 24.17979 * 22 20 19 38 38 H 1.09001 * 110.97124 * 147.94742 * 22 20 19 39 39 H 1.09001 * 110.24549 * 215.58460 * 23 22 20 40 40 H 1.09004 * 110.31536 * 93.62402 * 23 22 20 41 41 H 0.97003 * 124.35103 * 197.03530 * 24 23 22 42 42 H 1.09007 * 113.76280 * 90.38687 * 27 13 11 43 43 H 1.09002 * 113.83783 * 318.92862 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7722 -1.2020 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2962 0.0025 13 7 6.0457 -4.4947 0.0016 14 6 7.3944 -5.0940 0.0028 15 6 6.7312 -6.3279 0.6414 16 7 7.2091 -7.6018 0.0981 17 6 7.0984 -8.7295 0.8278 18 8 6.6036 -8.6896 1.9344 19 6 7.5905 -10.0398 0.2692 20 6 7.3477 -11.1529 1.2904 21 1 7.7953 -10.8934 2.2498 22 6 7.9132 -12.4967 0.7752 23 6 6.6707 -13.1254 0.1061 24 7 5.5154 -12.5234 0.7818 25 6 5.8656 -11.4109 1.4501 26 8 5.1044 -10.7156 2.0888 27 6 5.4207 -5.8342 0.0027 28 1 -0.4851 0.8399 -0.0004 29 1 3.6440 -3.4313 -0.8893 30 1 3.6433 -3.4318 0.8907 31 1 8.1005 -4.5856 0.6593 32 1 7.7963 -5.2776 -0.9936 33 1 6.7231 -6.3071 1.7312 34 1 7.6052 -7.6336 -0.7867 35 1 8.6572 -9.9668 0.0575 36 1 7.0522 -10.2675 -0.6509 37 1 8.7071 -12.3321 0.0467 38 1 8.2656 -13.1141 1.6014 39 1 6.6710 -14.2059 0.2500 40 1 6.6522 -12.8870 -0.9574 41 1 4.6148 -12.8823 0.7505 42 1 5.2396 -6.2352 -0.9946 43 1 4.5543 -5.9155 0.6591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759200037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -65.732178 kcal Electronic energy + Delta-G solvation = -26312.183475 eV Core-core repulsion = 22292.031626 eV Total energy + Delta-G solvation = -4020.151849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.15130 -40.44983 -39.12368 -37.50581 -36.70082 -34.06058 -33.28024 -32.42209 -30.51013 -29.52384 -27.83051 -26.40024 -26.21090 -25.55733 -22.43980 -22.11151 -21.06165 -20.23041 -19.16093 -17.92043 -17.74007 -17.30750 -17.03929 -16.71453 -16.25598 -16.12188 -15.49446 -14.98974 -14.89439 -14.79411 -14.22839 -14.20066 -14.02142 -13.86184 -13.41409 -13.22034 -13.04214 -13.02312 -12.90601 -12.76623 -12.66496 -12.42724 -11.89908 -11.85131 -11.53373 -11.46354 -11.24290 -10.99287 -10.60329 -10.20783 -9.91030 -9.83664 -9.58671 -9.49490 -9.35268 -8.98827 -8.73131 -8.49212 -6.90911 -6.26856 -3.98955 2.29454 2.35779 2.42875 2.77104 2.95951 2.97378 3.17898 3.34380 3.52148 3.57999 3.84179 3.87895 4.09516 4.11040 4.34346 4.35443 4.44647 4.49008 4.70624 4.72968 4.76962 4.86173 4.94882 4.95814 5.04302 5.12010 5.16585 5.19101 5.27328 5.36330 5.45850 5.46913 5.67287 5.79749 5.86141 6.04569 6.15369 6.44577 6.64487 7.11538 7.67165 7.92861 7.96172 8.01218 8.38902 8.44196 9.18993 10.82372 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.001887 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.053682 B =14834.438165 C =15720.370999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.116 4.116 11 C 0.559 3.441 12 O -0.516 6.516 13 N -0.648 5.648 14 C 0.103 3.897 15 C 0.115 3.885 16 N -0.724 5.724 17 C 0.502 3.498 18 O -0.501 6.501 19 C -0.124 4.124 20 C -0.110 4.110 21 H 0.114 0.886 22 C -0.131 4.131 23 C 0.100 3.900 24 N -0.742 5.742 25 C 0.515 3.485 26 O -0.495 6.495 27 C 0.089 3.911 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.128 0.872 34 H 0.401 0.599 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.409 0.591 42 H 0.087 0.913 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.502 -31.307 -3.773 37.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.267 4.267 11 C 0.349 3.651 12 O -0.390 6.390 13 N -0.387 5.387 14 C -0.021 4.021 15 C 0.009 3.991 16 N -0.378 5.378 17 C 0.287 3.713 18 O -0.373 6.373 19 C -0.165 4.165 20 C -0.133 4.133 21 H 0.132 0.868 22 C -0.169 4.169 23 C -0.025 4.025 24 N -0.400 5.400 25 C 0.299 3.701 26 O -0.366 6.366 27 C -0.035 4.035 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.146 0.854 34 H 0.236 0.764 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.248 0.752 42 H 0.105 0.895 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 20.718 -29.114 -2.566 35.825 hybrid contribution -1.076 -0.630 -0.757 1.459 sum 19.641 -29.744 -3.324 35.798 Atomic orbital electron populations 1.69933 1.05898 1.27763 1.48037 1.24714 0.94461 0.98962 0.93187 0.86728 0.81916 0.83267 0.79903 1.19217 1.19904 1.15915 1.22307 0.88152 0.97583 1.58802 0.89352 1.84757 1.09448 0.99905 1.97439 1.23224 0.93389 1.04219 1.05853 1.19976 0.90504 0.80012 0.74657 1.90712 1.58947 1.40821 1.48480 1.49732 1.08666 1.04515 1.75815 1.23382 0.87655 0.90174 1.00846 1.23077 0.93806 0.81454 1.00793 1.45887 1.64148 1.07228 1.20524 1.20636 0.79210 0.85404 0.86069 1.90882 1.41366 1.85760 1.19294 1.21542 1.03877 0.91631 0.99407 1.21730 0.94946 0.94951 1.01638 0.86813 1.22714 0.97357 0.95206 1.01630 1.22039 0.85260 0.98415 0.96736 1.46299 1.11833 1.28545 1.53301 1.20728 0.90575 0.80214 0.78537 1.90860 1.57303 1.49020 1.39461 1.23735 0.98215 0.80202 1.01358 0.91934 0.88573 0.88395 0.89272 0.89707 0.85401 0.76411 0.87441 0.88559 0.88826 0.89502 0.90302 0.91119 0.75222 0.89486 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.00 13.97 55.49 0.78 -26.23 16 2 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 3 Si 0.86 22.18 27.74 -169.99 -4.72 17.46 16 4 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.24 -6.09 6.74 56.52 0.38 -5.71 16 7 C -0.52 -15.39 10.04 30.94 0.31 -15.08 16 8 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 9 S -0.14 -3.72 18.55 -107.50 -1.99 -5.71 16 10 C -0.12 -2.40 5.91 36.01 0.21 -2.19 16 11 C 0.56 10.69 8.08 -10.98 -0.09 10.60 16 12 O -0.52 -11.70 16.59 5.55 0.09 -11.61 16 13 N -0.65 -9.09 3.61 -178.34 -0.64 -9.73 16 14 C 0.10 1.02 8.59 -2.96 -0.03 1.00 16 15 C 0.11 1.07 4.40 -70.15 -0.31 0.76 16 16 N -0.72 -4.75 5.37 -55.35 -0.30 -5.05 16 17 C 0.50 4.29 7.62 -10.99 -0.08 4.21 16 18 O -0.50 -6.94 13.45 -15.98 -0.21 -7.15 16 19 C -0.12 -0.52 5.11 -27.88 -0.14 -0.66 16 20 C -0.11 -0.63 2.55 -90.63 -0.23 -0.86 16 21 H 0.11 0.80 7.96 -51.93 -0.41 0.38 16 22 C -0.13 -0.23 6.71 -25.10 -0.17 -0.40 16 23 C 0.10 0.20 7.78 -3.12 -0.02 0.17 16 24 N -0.74 -4.20 6.24 -59.20 -0.37 -4.57 16 25 C 0.52 4.89 7.42 -10.86 -0.08 4.81 16 26 O -0.49 -7.58 16.03 -15.97 -0.26 -7.84 16 27 C 0.09 0.97 8.43 -2.85 -0.02 0.94 16 28 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 30 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.64 8.11 -51.93 -0.42 0.21 16 33 H 0.13 1.45 7.51 -51.93 -0.39 1.06 16 34 H 0.40 1.28 8.71 -40.82 -0.36 0.93 16 35 H 0.11 0.11 8.14 -51.93 -0.42 -0.32 16 36 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 -0.05 7.90 -51.93 -0.41 -0.46 16 38 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 40 H 0.07 0.06 8.14 -51.93 -0.42 -0.37 16 41 H 0.41 2.01 8.96 -40.82 -0.37 1.65 16 42 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -41.98 377.53 -8.84 -50.82 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.16 Total: -2.15 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.75 Total: 6.06 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.54 Total: -45.58 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.38 Total: -26.59 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.72 Total: 17.46 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -41.98 -8.84 -50.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759200037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.908 kcal (2) G-P(sol) polarization free energy of solvation -41.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds