Wall clock time and date at job start Sat Apr 11 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00188 * 2 1 4 4 H 1.48502 * 109.46762 * 270.00184 * 3 2 1 5 5 H 1.48498 * 109.46667 * 29.99426 * 3 2 1 6 6 H 1.48490 * 109.47482 * 149.99866 * 3 2 1 7 7 C 1.38803 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00126 * 0.02562 * 7 2 1 9 9 S 1.76192 * 120.00004 * 180.02562 * 7 2 1 10 10 C 1.81008 * 100.00015 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47092 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99916 * 180.02562 * 11 10 9 14 14 C 1.47584 * 134.49239 * 180.02562 * 13 11 10 15 15 C 1.53950 * 86.11406 * 155.35069 * 14 13 11 16 16 N 1.46504 * 113.73947 * 137.95163 * 15 14 13 17 17 C 1.34771 * 119.99855 * 156.92214 * 16 15 14 18 18 O 1.21280 * 120.00118 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99982 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47207 * 180.02562 * 19 17 16 21 21 H 1.09002 * 110.43437 * 305.69925 * 20 19 17 22 22 C 1.54627 * 110.59793 * 183.08070 * 20 19 17 23 23 C 1.54486 * 101.76521 * 266.06241 * 22 20 19 24 24 N 1.46757 * 105.47179 * 334.58397 * 23 22 20 25 25 C 1.34422 * 111.30497 * 17.01651 * 24 23 22 26 26 O 1.21273 * 124.94668 * 179.62647 * 25 24 23 27 27 C 1.47814 * 134.45675 * 359.85313 * 13 11 10 28 28 H 0.96996 * 120.00760 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.46865 * 60.00057 * 10 9 7 30 30 H 1.09002 * 109.46851 * 299.99813 * 10 9 7 31 31 H 1.08995 * 113.77066 * 41.04940 * 14 13 11 32 32 H 1.08999 * 113.86787 * 269.66482 * 14 13 11 33 33 H 1.08995 * 113.73980 * 269.14852 * 15 14 13 34 34 H 0.97000 * 119.99932 * 336.92576 * 16 15 14 35 35 H 1.08994 * 109.47174 * 59.99869 * 19 17 16 36 36 H 1.09002 * 109.46931 * 300.00172 * 19 17 16 37 37 H 1.08999 * 110.97081 * 24.17979 * 22 20 19 38 38 H 1.09001 * 110.97124 * 147.94742 * 22 20 19 39 39 H 1.09001 * 110.24549 * 215.58460 * 23 22 20 40 40 H 1.09004 * 110.31536 * 93.62402 * 23 22 20 41 41 H 0.97003 * 124.35103 * 197.03530 * 24 23 22 42 42 H 1.09007 * 113.76280 * 90.38687 * 27 13 11 43 43 H 1.09002 * 113.83783 * 318.92862 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7722 -1.2020 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2962 0.0025 13 7 6.0457 -4.4947 0.0016 14 6 7.3944 -5.0940 0.0028 15 6 6.7312 -6.3279 0.6414 16 7 7.2091 -7.6018 0.0981 17 6 7.0984 -8.7295 0.8278 18 8 6.6036 -8.6896 1.9344 19 6 7.5905 -10.0398 0.2692 20 6 7.3477 -11.1529 1.2904 21 1 7.7953 -10.8934 2.2498 22 6 7.9132 -12.4967 0.7752 23 6 6.6707 -13.1254 0.1061 24 7 5.5154 -12.5234 0.7818 25 6 5.8656 -11.4109 1.4501 26 8 5.1044 -10.7156 2.0888 27 6 5.4207 -5.8342 0.0027 28 1 -0.4851 0.8399 -0.0004 29 1 3.6440 -3.4313 -0.8893 30 1 3.6433 -3.4318 0.8907 31 1 8.1005 -4.5856 0.6593 32 1 7.7963 -5.2776 -0.9936 33 1 6.7231 -6.3071 1.7312 34 1 7.6052 -7.6336 -0.7867 35 1 8.6572 -9.9668 0.0575 36 1 7.0522 -10.2675 -0.6509 37 1 8.7071 -12.3321 0.0467 38 1 8.2656 -13.1141 1.6014 39 1 6.6710 -14.2059 0.2500 40 1 6.6522 -12.8870 -0.9574 41 1 4.6148 -12.8823 0.7505 42 1 5.2396 -6.2352 -0.9946 43 1 4.5543 -5.9155 0.6591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759200037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:37 Heat of formation + Delta-G solvation = -100.430217 kcal Electronic energy + Delta-G solvation = -26313.688095 eV Core-core repulsion = 22292.031626 eV Total energy + Delta-G solvation = -4021.656469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81517 -41.32868 -40.04548 -38.74338 -37.34600 -34.88614 -34.71248 -33.71539 -31.90354 -30.02360 -28.87737 -27.89728 -27.24293 -26.76949 -23.14542 -22.56215 -21.76106 -20.80856 -20.46221 -19.59740 -18.47810 -18.23681 -17.84442 -17.78690 -17.21775 -16.91752 -16.80704 -16.57713 -16.10638 -15.84314 -15.46656 -15.00815 -14.93688 -14.66951 -14.65165 -14.39044 -14.02689 -13.89838 -13.74804 -13.55514 -13.39055 -13.32722 -13.17414 -13.02709 -12.89750 -12.69589 -12.39003 -12.11466 -11.89689 -11.81581 -11.20344 -11.18429 -10.84375 -10.61543 -10.57153 -10.12871 -9.95218 -9.87899 -9.05851 -8.54877 -6.27373 0.88109 1.29114 1.37109 1.41598 1.48503 1.67319 1.73236 1.78805 2.22338 2.31126 2.56029 2.60701 2.82847 3.22053 3.41699 3.48817 3.58672 3.79766 3.81742 3.98583 4.05961 4.15564 4.25617 4.33667 4.37062 4.46841 4.49266 4.56459 4.57429 4.73806 4.75262 4.85072 4.94750 4.99872 5.17624 5.28342 5.47466 5.66903 6.04117 6.07169 6.12458 6.38503 6.62427 6.89227 6.95225 7.36659 7.42930 8.57747 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.001887 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.053682 B =14834.438165 C =15720.370999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.917 3.083 4 H -0.259 1.259 5 H -0.257 1.257 6 H -0.238 1.238 7 C -0.533 4.533 8 H 0.059 0.941 9 S -0.168 6.168 10 C -0.105 4.105 11 C 0.560 3.440 12 O -0.560 6.560 13 N -0.646 5.646 14 C 0.110 3.890 15 C 0.128 3.872 16 N -0.705 5.705 17 C 0.493 3.507 18 O -0.561 6.561 19 C -0.114 4.114 20 C -0.111 4.111 21 H 0.092 0.908 22 C -0.118 4.118 23 C 0.094 3.906 24 N -0.736 5.736 25 C 0.498 3.502 26 O -0.571 6.571 27 C 0.086 3.914 28 H 0.278 0.722 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.423 0.577 35 H 0.153 0.847 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.409 0.591 42 H 0.117 0.883 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.668 -33.492 -6.194 41.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.161 4.161 3 Si 0.739 3.261 4 H -0.183 1.183 5 H -0.181 1.181 6 H -0.162 1.162 7 C -0.680 4.680 8 H 0.077 0.923 9 S 0.059 5.941 10 C -0.256 4.256 11 C 0.349 3.651 12 O -0.438 6.438 13 N -0.383 5.383 14 C -0.013 4.013 15 C 0.021 3.979 16 N -0.360 5.360 17 C 0.281 3.719 18 O -0.438 6.438 19 C -0.154 4.154 20 C -0.134 4.134 21 H 0.110 0.890 22 C -0.155 4.155 23 C -0.029 4.029 24 N -0.391 5.391 25 C 0.285 3.715 26 O -0.449 6.449 27 C -0.038 4.038 28 H 0.088 0.912 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.262 0.738 35 H 0.171 0.829 36 H 0.139 0.861 37 H 0.149 0.851 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.247 0.753 42 H 0.135 0.865 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 23.933 -31.418 -5.064 39.818 hybrid contribution -2.060 -0.245 -0.011 2.075 sum 21.873 -31.663 -5.075 38.816 Atomic orbital electron populations 1.70013 1.07333 1.29156 1.48846 1.25609 0.95348 1.02395 0.92712 0.85829 0.80589 0.79301 0.80410 1.18318 1.18096 1.16151 1.22439 0.90172 0.96714 1.58721 0.92290 1.84605 1.06542 1.05392 1.97572 1.23181 0.95693 0.99904 1.06774 1.19495 0.89192 0.81349 0.75066 1.90687 1.59367 1.42572 1.51170 1.49677 1.11465 1.03817 1.73360 1.23682 0.85602 0.89013 1.02955 1.22593 0.92966 0.82871 0.99508 1.45676 1.63411 1.05659 1.21258 1.21561 0.78005 0.87022 0.85336 1.90883 1.44042 1.86663 1.22186 1.21662 1.06670 0.87950 0.99134 1.21758 0.92144 0.97827 1.01624 0.89004 1.22784 0.97932 0.92328 1.02477 1.22406 0.83623 0.99356 0.97562 1.46472 1.13134 1.27380 1.52096 1.21544 0.92057 0.80221 0.77704 1.90811 1.59480 1.51729 1.42871 1.24037 0.98528 0.78313 1.02904 0.91243 0.87235 0.87923 0.89500 0.85863 0.87832 0.73806 0.82934 0.86144 0.85139 0.89238 0.88391 0.88764 0.75261 0.86534 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.12 13.97 21.65 0.30 -56.82 16 2 C 0.04 2.71 5.50 84.86 0.47 3.18 16 3 Si 0.92 46.05 27.74 68.60 1.90 47.95 16 4 H -0.26 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.24 -11.95 6.74 99.48 0.67 -11.28 16 7 C -0.53 -32.28 10.04 67.96 0.68 -31.60 16 8 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 9 S -0.17 -8.89 18.55 -56.49 -1.05 -9.93 16 10 C -0.10 -4.36 5.91 71.24 0.42 -3.94 16 11 C 0.56 21.21 8.08 87.66 0.71 21.92 16 12 O -0.56 -25.36 16.59 -3.04 -0.05 -25.41 16 13 N -0.65 -17.26 3.61 -836.53 -3.02 -20.28 16 14 C 0.11 1.89 8.59 86.49 0.74 2.63 16 15 C 0.13 2.20 4.40 46.74 0.21 2.40 16 16 N -0.71 -7.30 5.37 -447.43 -2.40 -9.70 16 17 C 0.49 7.69 7.62 87.66 0.67 8.35 16 18 O -0.56 -16.16 13.45 17.56 0.24 -15.92 16 19 C -0.11 -0.54 5.11 29.85 0.15 -0.38 16 20 C -0.11 -1.06 2.55 -10.80 -0.03 -1.09 16 21 H 0.09 1.29 7.96 -2.39 -0.02 1.27 16 22 C -0.12 0.06 6.71 31.65 0.21 0.27 16 23 C 0.09 0.02 7.78 86.84 0.68 0.70 16 24 N -0.74 -7.45 6.24 -459.80 -2.87 -10.32 16 25 C 0.50 9.54 7.42 87.90 0.65 10.20 16 26 O -0.57 -18.90 16.03 17.59 0.28 -18.62 16 27 C 0.09 1.73 8.43 86.43 0.73 2.46 16 28 H 0.28 15.97 8.31 -92.71 -0.77 15.19 16 29 H 0.11 4.23 8.14 -2.40 -0.02 4.21 16 30 H 0.10 4.14 8.14 -2.39 -0.02 4.12 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.12 1.28 8.11 -2.39 -0.02 1.26 16 33 H 0.10 2.39 7.51 -2.39 -0.02 2.37 16 34 H 0.42 0.73 8.71 -92.71 -0.81 -0.07 16 35 H 0.15 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.13 -0.95 7.90 -2.39 -0.02 -0.97 16 38 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H 0.09 -0.34 8.14 -2.38 -0.02 -0.35 16 41 H 0.41 3.86 8.96 -92.71 -0.83 3.03 16 42 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -99.43 377.53 -1.00 -100.43 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -0.62 Total: 3.52 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 6.29 Total: 15.10 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -7.99 Total: -97.11 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: 0.47 Total: -59.96 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.90 Total: 47.95 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.93 kcal Total: -99.43 -1.00 -100.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759200037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.004 kcal (2) G-P(sol) polarization free energy of solvation -99.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds