Wall clock time and date at job start Sat Apr 11 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47344 * 2 1 4 4 H 1.08996 * 109.46935 * 55.00115 * 3 2 1 5 5 C 1.50701 * 109.47047 * 175.00037 * 3 2 1 6 6 H 1.07999 * 119.99763 * 120.00217 * 5 3 2 7 7 C 1.37875 * 120.00101 * 299.99662 * 5 3 2 8 8 N 1.31517 * 120.00105 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00160 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47047 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47378 * 120.00325 * 9 7 5 12 12 H 1.48500 * 109.46955 * 240.00251 * 9 7 5 13 13 N 1.46500 * 109.46988 * 295.00197 * 3 2 1 14 14 C 1.34775 * 120.00052 * 85.27087 * 13 3 2 15 15 O 1.21589 * 119.99780 * 359.72526 * 14 13 3 16 16 N 1.34776 * 119.99852 * 179.72310 * 14 13 3 17 17 C 1.40198 * 120.00143 * 175.31331 * 16 14 13 18 18 C 1.38837 * 119.99514 * 215.18574 * 17 16 14 19 19 C 1.38071 * 120.00343 * 179.72257 * 18 17 16 20 20 C 1.38878 * 119.99504 * 0.54785 * 19 18 17 21 21 N 1.39917 * 120.00772 * 179.70445 * 20 19 18 22 22 S 1.65600 * 119.99899 * 314.90857 * 21 20 19 23 23 C 1.81398 * 104.44922 * 297.67554 * 22 21 20 24 24 O 1.42097 * 104.27856 * 53.74463 * 22 21 20 25 25 O 1.42094 * 104.27869 * 181.60506 * 22 21 20 26 26 C 1.38885 * 119.98953 * 359.72273 * 20 19 18 27 27 C 1.38068 * 119.99303 * 0.02562 * 26 20 19 28 28 H 1.09003 * 109.46759 * 60.00003 * 1 2 3 29 29 H 1.09001 * 109.46815 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47159 * 299.99970 * 1 2 3 31 31 H 1.09003 * 109.47330 * 240.00254 * 2 1 3 32 32 H 1.08999 * 109.47431 * 119.99737 * 2 1 3 33 33 H 0.96995 * 120.00307 * 179.97438 * 8 7 5 34 34 H 0.97007 * 119.99409 * 264.99905 * 13 3 2 35 35 H 0.97001 * 120.00221 * 355.31017 * 16 14 13 36 36 H 1.07998 * 119.99829 * 0.02562 * 18 17 16 37 37 H 1.07998 * 120.00471 * 180.25906 * 19 18 17 38 38 H 0.97003 * 120.00173 * 134.90926 * 21 20 19 39 39 H 1.09000 * 109.47352 * 65.02403 * 23 22 21 40 40 H 1.09004 * 109.47466 * 185.01833 * 23 22 21 41 41 H 1.09004 * 109.47464 * 305.01976 * 23 22 21 42 42 H 1.08002 * 120.00054 * 179.97438 * 26 20 19 43 43 H 1.08008 * 119.99706 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3367 2.1729 9 14 6.0050 0.8812 1.3818 10 1 6.5987 1.5472 0.1947 11 1 6.3991 1.6166 2.6102 12 1 6.4970 -0.5176 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4372 2.6692 -1.3650 15 8 -0.3393 2.6370 -0.4300 16 7 0.0828 3.2767 -2.5148 17 6 -1.2148 3.7849 -2.6680 18 6 -1.8384 3.7335 -3.9074 19 6 -3.1185 4.2288 -4.0572 20 6 -3.7779 4.7887 -2.9707 21 7 -5.0728 5.2962 -3.1237 22 16 -5.4404 6.2475 -4.4284 23 6 -4.3731 7.7024 -4.2429 24 8 -5.0383 5.4739 -5.5505 25 8 -6.8028 6.6003 -4.2321 26 6 -3.1517 4.8450 -1.7323 27 6 -1.8736 4.3449 -1.5818 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0617 2.9495 34 1 2.2720 2.1231 -1.9978 35 1 0.7255 3.3623 -3.2363 36 1 -1.3241 3.3017 -4.7532 37 1 -3.6053 4.1851 -5.0203 38 1 -5.7551 5.0909 -2.4655 39 1 -3.3296 7.4020 -4.3377 40 1 -4.6133 8.4305 -5.0178 41 1 -4.5349 8.1491 -3.2619 42 1 -3.6642 5.2807 -0.8874 43 1 -1.3864 4.3891 -0.6189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157506867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:43 Heat of formation + Delta-G solvation = -67.271366 kcal Electronic energy + Delta-G solvation = -27256.746432 eV Core-core repulsion = 23236.527839 eV Total energy + Delta-G solvation = -4020.218593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.36665 -38.95627 -37.47750 -36.38986 -36.07916 -34.85849 -33.49282 -32.33547 -30.96685 -30.82645 -29.87764 -28.10647 -26.71808 -23.38493 -23.05463 -22.30709 -20.73511 -19.82766 -19.56648 -18.38490 -18.02342 -17.79520 -17.45089 -16.63627 -16.03192 -15.75277 -15.36745 -15.10611 -14.57968 -14.30964 -14.12250 -13.72826 -13.67548 -13.61827 -13.45008 -13.14429 -12.95405 -12.70501 -12.51071 -12.43157 -12.21655 -11.97981 -11.74630 -11.55802 -11.36399 -11.29704 -10.99665 -10.89991 -10.61437 -10.33164 -10.22654 -9.83598 -9.59432 -9.41369 -9.08157 -8.94663 -8.55454 -8.01842 -7.67787 -6.17140 -4.26583 -0.19130 1.23834 1.37551 2.24193 3.11349 3.20301 3.28902 3.31289 3.36150 3.53498 3.80634 3.94220 4.28129 4.34032 4.56849 4.75382 4.89794 5.00662 5.08853 5.14919 5.27680 5.31717 5.55535 5.63128 6.01958 6.11315 6.38367 6.38866 6.45287 6.47753 6.55233 6.64568 6.72293 6.97861 7.07346 7.16520 7.31036 7.33814 7.40937 7.60352 7.81934 7.93197 8.14446 8.68313 8.79159 9.18962 9.41840 10.88203 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.032920 B = 0.002078 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.334021 B =13472.665201 C =13660.601558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.718 5.718 14 C 0.692 3.308 15 O -0.576 6.576 16 N -0.698 5.698 17 C 0.178 3.822 18 C -0.135 4.135 19 C -0.133 4.133 20 C 0.103 3.897 21 N -1.054 6.054 22 S 2.611 3.389 23 C -0.668 4.668 24 O -0.950 6.950 25 O -0.959 6.959 26 C -0.109 4.109 27 C -0.105 4.105 28 H 0.038 0.962 29 H 0.021 0.979 30 H 0.049 0.951 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.403 0.597 36 H 0.130 0.870 37 H 0.158 0.842 38 H 0.424 0.576 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.657 12.396 -12.874 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.369 5.369 14 C 0.393 3.607 15 O -0.453 6.453 16 N -0.346 5.346 17 C 0.080 3.920 18 C -0.157 4.157 19 C -0.155 4.155 20 C 0.007 3.993 21 N -0.806 5.806 22 S 2.704 3.296 23 C -0.819 4.819 24 O -0.940 6.940 25 O -0.949 6.949 26 C -0.131 4.131 27 C -0.126 4.126 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.238 0.762 36 H 0.148 0.852 37 H 0.175 0.825 38 H 0.261 0.739 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.803 12.055 -12.566 22.220 hybrid contribution 1.846 0.198 0.133 1.862 sum -11.957 12.253 -12.433 21.159 Atomic orbital electron populations 1.21807 0.98229 0.97952 1.01250 1.21959 0.92721 0.99834 1.02248 1.18737 0.94030 0.88925 0.79878 0.93179 1.21251 0.90636 1.39082 1.06311 0.92048 1.24879 0.98638 0.94786 0.95377 1.69901 1.35070 1.37517 1.09352 0.86393 0.84785 0.77794 0.78101 1.19781 1.20888 1.20862 1.45853 1.13409 1.58229 1.19367 1.16115 0.83687 0.78688 0.82213 1.90886 1.51704 1.64852 1.37893 1.42951 1.12011 1.61157 1.18522 1.17683 0.85261 0.94862 0.94153 1.20808 0.94953 1.03027 0.96867 1.21642 0.95521 0.98244 1.00050 1.17338 0.84550 1.02016 0.95379 1.53208 1.16847 1.64488 1.46031 1.04993 0.74798 0.76182 0.73600 1.30461 1.17961 1.21484 1.11977 1.93573 1.83731 1.66478 1.50250 1.93623 1.31446 1.84656 1.85190 1.21042 0.94841 1.00862 0.96386 1.21351 0.94827 0.96346 1.00084 0.94303 0.95985 0.93149 0.95085 0.88260 0.92559 0.78191 0.76237 0.85204 0.82487 0.73912 0.84921 0.85197 0.85070 0.85371 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.52 37.16 0.32 -2.65 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.29 6.87 2.24 -69.08 -0.15 6.71 16 4 H 0.05 1.40 7.57 -51.93 -0.39 1.01 16 5 C -0.53 -13.53 8.73 -34.44 -0.30 -13.83 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -24.01 11.29 55.43 0.63 -23.39 16 9 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.72 -13.87 5.02 -59.81 -0.30 -14.17 16 14 C 0.69 12.80 6.98 -86.92 -0.61 12.19 16 15 O -0.58 -12.47 10.95 5.29 0.06 -12.41 16 16 N -0.70 -9.66 5.35 -14.18 -0.08 -9.73 16 17 C 0.18 2.37 6.30 -83.59 -0.53 1.85 16 18 C -0.13 -1.51 9.96 -39.42 -0.39 -1.90 16 19 C -0.13 -1.44 9.22 -39.41 -0.36 -1.81 16 20 C 0.10 1.04 6.07 -83.69 -0.51 0.53 16 21 N -1.05 -8.22 5.68 32.45 0.18 -8.03 16 22 S 2.61 19.96 6.00 -107.50 -0.64 19.32 16 23 C -0.67 -3.09 10.78 101.05 1.09 -2.00 16 24 O -0.95 -10.13 15.08 -57.54 -0.87 -11.00 16 25 O -0.96 -10.18 18.08 -57.54 -1.04 -11.22 16 26 C -0.11 -1.19 9.96 -39.40 -0.39 -1.59 16 27 C -0.10 -1.44 8.69 -39.42 -0.34 -1.79 16 28 H 0.04 0.84 5.66 -51.93 -0.29 0.54 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.39 6.37 8.56 -40.82 -0.35 6.02 16 35 H 0.40 4.21 8.84 -40.82 -0.36 3.85 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.16 1.69 5.54 -52.49 -0.29 1.39 16 38 H 0.42 2.62 8.92 -34.47 -0.31 2.31 16 39 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.15 2.40 6.25 -52.48 -0.33 2.08 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -33.99 364.50 -9.55 -43.54 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -5.54 Total: 12.43 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -2.42 Total: -5.83 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.43 Total: -55.32 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.85 Total: -34.64 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 19.96 SS G_CDS: -0.64 Total: 19.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.99 -9.55 -43.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157506867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.732 kcal (2) G-P(sol) polarization free energy of solvation -33.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds