Wall clock time and date at job start Sat Apr 11 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47344 * 2 1 4 4 H 1.08996 * 109.46935 * 55.00115 * 3 2 1 5 5 C 1.50701 * 109.47047 * 175.00037 * 3 2 1 6 6 H 1.07999 * 119.99763 * 120.00217 * 5 3 2 7 7 C 1.37875 * 120.00101 * 299.99662 * 5 3 2 8 8 N 1.31517 * 120.00105 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00160 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47047 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47378 * 120.00325 * 9 7 5 12 12 H 1.48500 * 109.46955 * 240.00251 * 9 7 5 13 13 N 1.46500 * 109.46988 * 295.00197 * 3 2 1 14 14 C 1.34775 * 120.00052 * 85.27087 * 13 3 2 15 15 O 1.21589 * 119.99780 * 359.72526 * 14 13 3 16 16 N 1.34776 * 119.99852 * 179.72310 * 14 13 3 17 17 C 1.40198 * 120.00143 * 175.31331 * 16 14 13 18 18 C 1.38837 * 119.99514 * 215.18574 * 17 16 14 19 19 C 1.38071 * 120.00343 * 179.72257 * 18 17 16 20 20 C 1.38878 * 119.99504 * 0.54785 * 19 18 17 21 21 N 1.39917 * 120.00772 * 179.70445 * 20 19 18 22 22 S 1.65600 * 119.99899 * 314.90857 * 21 20 19 23 23 C 1.81398 * 104.44922 * 297.67554 * 22 21 20 24 24 O 1.42097 * 104.27856 * 53.74463 * 22 21 20 25 25 O 1.42094 * 104.27869 * 181.60506 * 22 21 20 26 26 C 1.38885 * 119.98953 * 359.72273 * 20 19 18 27 27 C 1.38068 * 119.99303 * 0.02562 * 26 20 19 28 28 H 1.09003 * 109.46759 * 60.00003 * 1 2 3 29 29 H 1.09001 * 109.46815 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47159 * 299.99970 * 1 2 3 31 31 H 1.09003 * 109.47330 * 240.00254 * 2 1 3 32 32 H 1.08999 * 109.47431 * 119.99737 * 2 1 3 33 33 H 0.96995 * 120.00307 * 179.97438 * 8 7 5 34 34 H 0.97007 * 119.99409 * 264.99905 * 13 3 2 35 35 H 0.97001 * 120.00221 * 355.31017 * 16 14 13 36 36 H 1.07998 * 119.99829 * 0.02562 * 18 17 16 37 37 H 1.07998 * 120.00471 * 180.25906 * 19 18 17 38 38 H 0.97003 * 120.00173 * 134.90926 * 21 20 19 39 39 H 1.09000 * 109.47352 * 65.02403 * 23 22 21 40 40 H 1.09004 * 109.47466 * 185.01833 * 23 22 21 41 41 H 1.09004 * 109.47464 * 305.01976 * 23 22 21 42 42 H 1.08002 * 120.00054 * 179.97438 * 26 20 19 43 43 H 1.08008 * 119.99706 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3367 2.1729 9 14 6.0050 0.8812 1.3818 10 1 6.5987 1.5472 0.1947 11 1 6.3991 1.6166 2.6102 12 1 6.4970 -0.5176 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4372 2.6692 -1.3650 15 8 -0.3393 2.6370 -0.4300 16 7 0.0828 3.2767 -2.5148 17 6 -1.2148 3.7849 -2.6680 18 6 -1.8384 3.7335 -3.9074 19 6 -3.1185 4.2288 -4.0572 20 6 -3.7779 4.7887 -2.9707 21 7 -5.0728 5.2962 -3.1237 22 16 -5.4404 6.2475 -4.4284 23 6 -4.3731 7.7024 -4.2429 24 8 -5.0383 5.4739 -5.5505 25 8 -6.8028 6.6003 -4.2321 26 6 -3.1517 4.8450 -1.7323 27 6 -1.8736 4.3449 -1.5818 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0617 2.9495 34 1 2.2720 2.1231 -1.9978 35 1 0.7255 3.3623 -3.2363 36 1 -1.3241 3.3017 -4.7532 37 1 -3.6053 4.1851 -5.0203 38 1 -5.7551 5.0909 -2.4655 39 1 -3.3296 7.4020 -4.3377 40 1 -4.6133 8.4305 -5.0178 41 1 -4.5349 8.1491 -3.2619 42 1 -3.6642 5.2807 -0.8874 43 1 -1.3864 4.3891 -0.6189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157506867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:41 Heat of formation + Delta-G solvation = -93.822094 kcal Electronic energy + Delta-G solvation = -27257.897758 eV Core-core repulsion = 23236.527839 eV Total energy + Delta-G solvation = -4021.369919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.59658 -40.09333 -38.23120 -37.45174 -37.07497 -36.27548 -34.71466 -34.06928 -32.54124 -31.88562 -30.29046 -29.40354 -28.30883 -25.08047 -24.14803 -23.42440 -22.11772 -21.32291 -20.54527 -19.73692 -18.83559 -18.67021 -18.58618 -17.76906 -17.27258 -16.94989 -16.61026 -16.40877 -15.99214 -15.72310 -15.12342 -14.95507 -14.58565 -14.48053 -14.26676 -14.18521 -14.02873 -13.96877 -13.62839 -13.49867 -13.24793 -13.16260 -13.13899 -12.84213 -12.81320 -12.70124 -12.58972 -12.13783 -12.04558 -12.00238 -11.62147 -11.48179 -11.03851 -10.92743 -10.72845 -10.52268 -9.89324 -9.64401 -8.74136 -8.14158 -6.30741 -0.78982 0.31276 0.44663 1.45638 1.47208 1.58151 1.60369 1.85211 2.25465 2.44072 2.77798 2.84337 3.15766 3.22490 3.52216 3.89821 4.05086 4.13202 4.15748 4.26654 4.43367 4.52825 4.60321 4.61416 4.69854 4.79852 4.95391 5.08846 5.17345 5.22179 5.26786 5.43642 5.47364 5.53070 5.57366 5.61536 5.66071 5.80586 5.89844 5.94325 6.19121 6.20783 6.33695 6.78058 7.30851 7.37997 7.77459 8.91338 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.032920 B = 0.002078 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.334021 B =13472.665201 C =13660.601558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.002 0.998 5 C -0.544 4.544 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.281 1.281 13 N -0.716 5.716 14 C 0.692 3.308 15 O -0.611 6.611 16 N -0.680 5.680 17 C 0.151 3.849 18 C -0.121 4.121 19 C -0.139 4.139 20 C 0.119 3.881 21 N -1.051 6.051 22 S 2.619 3.381 23 C -0.652 4.652 24 O -0.983 6.983 25 O -0.990 6.990 26 C -0.108 4.108 27 C -0.123 4.123 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.026 0.974 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.264 0.736 34 H 0.402 0.598 35 H 0.420 0.580 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.432 0.568 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.425 13.570 -14.917 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.019 0.981 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.207 1.207 13 N -0.368 5.368 14 C 0.393 3.607 15 O -0.491 6.491 16 N -0.329 5.329 17 C 0.055 3.945 18 C -0.143 4.143 19 C -0.160 4.160 20 C 0.023 3.977 21 N -0.803 5.803 22 S 2.716 3.284 23 C -0.806 4.806 24 O -0.973 6.973 25 O -0.981 6.981 26 C -0.130 4.130 27 C -0.144 4.144 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.258 0.742 36 H 0.172 0.828 37 H 0.180 0.820 38 H 0.270 0.730 39 H 0.160 0.840 40 H 0.170 0.830 41 H 0.168 0.832 42 H 0.165 0.835 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.608 13.231 -14.682 23.996 hybrid contribution 1.647 -0.038 0.729 1.801 sum -11.961 13.193 -13.953 22.623 Atomic orbital electron populations 1.21625 0.97032 0.98782 1.00203 1.21808 0.93665 0.99401 1.01198 1.18256 0.93370 0.88748 0.80318 0.98058 1.21596 0.91397 1.38711 1.06580 0.90963 1.25736 1.03108 0.94492 0.95114 1.70052 1.36914 1.38418 1.09910 0.85343 0.79364 0.77716 0.78161 1.18434 1.21157 1.20650 1.45445 1.14353 1.58544 1.18488 1.16185 0.82922 0.78605 0.82998 1.90873 1.52609 1.66012 1.39619 1.42577 1.12854 1.60089 1.17396 1.17842 0.85172 0.96394 0.95051 1.20982 0.94865 1.01945 0.96476 1.21808 0.95509 0.98229 1.00459 1.17316 0.85027 1.00621 0.94740 1.53141 1.16098 1.64894 1.46134 1.04581 0.74452 0.76682 0.72638 1.30323 1.16933 1.19318 1.14036 1.93526 1.84036 1.68204 1.51568 1.93586 1.33930 1.85145 1.85420 1.21143 0.93879 1.00463 0.97483 1.21230 0.96127 0.97956 0.99133 0.93985 0.94059 0.95477 0.94179 0.91025 0.92645 0.76371 0.74160 0.82828 0.81990 0.72994 0.84039 0.82970 0.83196 0.83470 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.52 71.98 0.61 -4.70 16 2 C -0.12 -5.86 5.45 30.60 0.17 -5.69 16 3 C 0.30 14.62 2.24 44.25 0.10 14.72 16 4 H 0.00 0.09 7.57 -2.39 -0.02 0.07 16 5 C -0.54 -27.72 8.73 25.60 0.22 -27.50 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.91 -51.16 11.29 21.45 0.24 -50.92 16 9 Si 0.97 41.01 29.54 68.60 2.03 43.04 16 10 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 11 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 13 N -0.72 -27.73 5.02 -461.40 -2.32 -30.05 16 14 C 0.69 25.82 6.98 179.06 1.25 27.07 16 15 O -0.61 -27.45 10.95 -4.00 -0.04 -27.49 16 16 N -0.68 -18.23 5.35 -317.02 -1.70 -19.93 16 17 C 0.15 3.90 6.30 38.09 0.24 4.14 16 18 C -0.12 -2.45 9.96 22.37 0.22 -2.23 16 19 C -0.14 -2.71 9.22 22.38 0.21 -2.51 16 20 C 0.12 2.19 6.07 38.16 0.23 2.42 16 21 N -1.05 -14.45 5.68 -51.25 -0.29 -14.74 16 22 S 2.62 35.30 6.00 -56.49 -0.34 34.96 16 23 C -0.65 -3.80 10.78 113.37 1.22 -2.58 16 24 O -0.98 -19.51 15.08 -127.65 -1.93 -21.43 16 25 O -0.99 -19.83 18.08 -127.65 -2.31 -22.14 16 26 C -0.11 -2.23 9.96 22.38 0.22 -2.01 16 27 C -0.12 -3.39 8.69 22.37 0.19 -3.20 16 28 H 0.04 1.82 5.66 -2.39 -0.01 1.81 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 1.30 7.85 -2.39 -0.02 1.28 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 32 H 0.07 3.88 5.95 -2.39 -0.01 3.87 16 33 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 34 H 0.40 12.86 8.56 -92.70 -0.79 12.07 16 35 H 0.42 8.04 8.84 -92.71 -0.82 7.22 16 36 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.16 3.13 5.54 -2.91 -0.02 3.11 16 38 H 0.43 4.64 8.92 -96.74 -0.86 3.78 16 39 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.12 4.04 6.25 -2.91 -0.02 4.03 16 Total: -1.00 -75.52 364.50 -2.70 -78.23 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -1.39 Total: 31.27 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.34 Total: -0.79 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -4.06 Total: -115.64 kcal Atomic # 8 Polarization: -66.79 SS G_CDS: -4.28 Total: -71.07 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 35.30 SS G_CDS: -0.34 Total: 34.96 kcal Total: -75.52 -2.70 -78.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157506867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.596 kcal (2) G-P(sol) polarization free energy of solvation -75.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds