Wall clock time and date at job start Sat Apr 11 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47364 * 2 1 4 4 C 1.38298 * 119.93612 * 265.00504 * 3 2 1 5 5 C 1.38090 * 120.07217 * 180.02562 * 4 3 2 6 6 C 1.38883 * 119.92826 * 359.97438 * 5 4 3 7 7 N 1.39946 * 120.06730 * 180.02562 * 6 5 4 8 8 C 1.34776 * 120.00202 * 144.93653 * 7 6 5 9 9 O 1.21593 * 119.99834 * 4.63544 * 8 7 6 10 10 N 1.34776 * 120.00449 * 184.63499 * 8 7 6 11 11 C 1.46490 * 120.00320 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47694 * 34.99937 * 11 10 8 13 13 C 1.53000 * 109.47190 * 274.99882 * 11 10 8 14 14 C 1.50703 * 109.47350 * 155.00217 * 11 10 8 15 15 H 1.08004 * 119.99760 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00237 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99689 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 120.00104 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47304 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47013 * 119.99787 * 18 16 14 21 21 H 1.48491 * 109.47432 * 239.99604 * 18 16 14 22 22 C 1.38847 * 119.86501 * 0.27369 * 6 5 4 23 23 C 1.38142 * 119.92412 * 359.47641 * 22 6 5 24 24 S 1.76198 * 119.96401 * 180.25050 * 23 22 6 25 25 N 1.65599 * 107.21719 * 115.25073 * 24 23 22 26 26 O 1.42098 * 106.40200 * 228.79589 * 24 23 22 27 27 O 1.42104 * 106.40232 * 1.71260 * 24 23 22 28 28 H 1.09003 * 109.46417 * 299.99610 * 1 2 3 29 29 H 1.09004 * 109.47016 * 59.99089 * 1 2 3 30 30 H 1.09000 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46879 * 240.00186 * 2 1 3 32 32 H 1.08994 * 109.47489 * 120.00749 * 2 1 3 33 33 H 1.07999 * 119.96166 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.03496 * 179.97438 * 5 4 3 35 35 H 0.97005 * 119.99776 * 324.65731 * 7 6 5 36 36 H 0.97006 * 119.99668 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47240 * 60.00085 * 13 11 10 38 38 H 1.09006 * 109.47099 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47388 * 299.99806 * 13 11 10 40 40 H 0.97003 * 119.99351 * 180.02562 * 17 16 14 41 41 H 1.07992 * 120.03638 * 179.69806 * 22 6 5 42 42 H 0.96999 * 119.99748 * 150.00282 * 25 24 23 43 43 H 0.96993 * 120.00094 * 329.99775 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3609 2.0367 -1.1939 5 6 2.8220 3.3383 -1.1971 6 6 2.9553 4.0292 0.0003 7 7 3.4218 5.3486 0.0004 8 6 2.9383 6.2343 0.8937 9 8 2.1601 5.8677 1.7531 10 7 3.3172 7.5263 0.8346 11 6 2.7912 8.4891 1.8053 12 1 2.6648 7.9995 2.7710 13 6 1.4393 9.0159 1.3199 14 6 3.7563 9.6379 1.9471 15 1 4.6704 9.6493 1.3719 16 6 3.4729 10.6737 2.8118 17 7 2.3601 10.6595 3.5126 18 14 4.6696 12.0972 2.9880 19 1 5.8371 11.8756 2.0975 20 1 3.9916 13.3634 2.6104 21 1 5.1315 12.1842 4.3966 22 6 2.6296 3.4064 1.1978 23 6 2.1640 2.1058 1.1938 24 16 1.7441 1.3168 2.7122 25 7 0.1155 1.0190 2.6760 26 8 2.3845 0.0484 2.6958 27 8 1.9533 2.2797 3.7361 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 2.2574 1.4987 -2.1247 34 1 3.0787 3.8185 -2.1298 35 1 4.0962 5.6246 -0.6400 36 1 3.9378 7.8188 0.1488 37 1 0.7412 8.1851 1.2173 38 1 1.0477 9.7320 2.0424 39 1 1.5656 9.5057 0.3543 40 1 2.1606 11.3885 4.1207 41 1 2.7368 3.9394 2.1309 42 1 -0.2488 0.2563 3.1519 43 1 -0.4741 1.6073 2.1790 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160240304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:51 Heat of formation + Delta-G solvation = -70.586315 kcal Electronic energy + Delta-G solvation = -27865.910370 eV Core-core repulsion = 23845.548030 eV Total energy + Delta-G solvation = -4020.362340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.45608 -38.90733 -37.31186 -35.87016 -35.69779 -34.66446 -33.82008 -32.82703 -32.21627 -31.38567 -29.35164 -27.97505 -25.28524 -24.12844 -23.70248 -21.86645 -21.09301 -19.93386 -19.65101 -18.57715 -18.30408 -17.54187 -16.95183 -16.24884 -16.03835 -15.95289 -15.37001 -15.02760 -14.84434 -14.58266 -14.17897 -14.02818 -13.80136 -13.73667 -13.22205 -12.89422 -12.44704 -12.41428 -12.36808 -12.19675 -12.06058 -12.04187 -11.78596 -11.46224 -11.39132 -11.11799 -11.02243 -10.79992 -10.57981 -10.36800 -10.26668 -10.23839 -10.15128 -9.55790 -9.34722 -9.07192 -8.60201 -8.21942 -7.84096 -6.14985 -4.24355 0.32453 0.71654 1.22640 2.97109 3.04585 3.22470 3.27384 3.30709 3.33127 3.61923 3.82309 4.29678 4.40756 4.49677 4.72683 4.86260 4.88750 4.99481 5.07124 5.17913 5.28316 5.36679 5.44214 5.64657 5.73952 5.76097 5.78914 5.94058 6.02170 6.15307 6.26126 6.41293 6.74903 6.84199 6.93043 6.97935 7.04815 7.15970 7.39767 7.59081 7.77944 7.94060 8.11877 8.66886 8.78908 9.14607 9.43521 10.91167 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019648 B = 0.002719 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.717683 B =10294.645744 C =11008.049757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.135 4.135 3 C -0.005 4.005 4 C -0.121 4.121 5 C -0.094 4.094 6 C 0.157 3.843 7 N -0.697 5.697 8 C 0.690 3.310 9 O -0.578 6.578 10 N -0.716 5.716 11 C 0.279 3.721 12 H 0.052 0.948 13 C -0.148 4.148 14 C -0.535 4.535 15 H 0.062 0.938 16 C 0.066 3.934 17 N -0.882 5.882 18 Si 0.903 3.097 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.018 4.018 23 C -0.658 4.658 24 S 2.701 3.299 25 N -1.245 6.245 26 O -0.964 6.964 27 O -0.952 6.952 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.405 0.595 36 H 0.387 0.613 37 H 0.015 0.985 38 H 0.091 0.909 39 H 0.026 0.974 40 H 0.265 0.735 41 H 0.167 0.833 42 H 0.420 0.580 43 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.203 -20.449 -10.771 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.172 4.172 3 C -0.008 4.008 4 C -0.141 4.141 5 C -0.116 4.116 6 C 0.060 3.940 7 N -0.345 5.345 8 C 0.390 3.610 9 O -0.455 6.455 10 N -0.367 5.367 11 C 0.177 3.823 12 H 0.070 0.930 13 C -0.206 4.206 14 C -0.573 4.573 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.519 5.519 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.040 4.040 23 C -0.747 4.747 24 S 2.790 3.210 25 N -0.921 5.921 26 O -0.954 6.954 27 O -0.941 6.941 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.240 0.760 36 H 0.219 0.781 37 H 0.034 0.966 38 H 0.110 0.890 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.184 0.816 42 H 0.251 0.749 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.253 -20.662 -9.071 22.799 hybrid contribution 0.731 1.497 -1.522 2.257 sum -2.522 -19.165 -10.593 22.042 Atomic orbital electron populations 1.22263 0.94174 1.02851 1.03737 1.21265 0.97029 0.92435 1.06444 1.19452 0.94423 0.95106 0.91794 1.20869 1.00984 0.94559 0.97664 1.21202 0.98520 0.95265 0.96579 1.17542 0.98994 0.84152 0.93359 1.42847 1.44908 1.08041 1.38740 1.16215 0.81445 0.81680 0.81663 1.90904 1.39044 1.78296 1.37272 1.45878 1.48785 1.06046 1.35942 1.18737 0.91312 0.85246 0.87007 0.93030 1.22105 0.98028 0.99931 1.00583 1.21226 1.05543 1.04997 1.25553 0.92016 1.24885 0.95532 0.98199 0.95098 1.69915 1.23542 1.32581 1.25859 0.86367 0.80754 0.81742 0.78045 1.19782 1.20871 1.20821 1.21300 0.91996 0.90722 0.99995 1.30288 1.19148 1.06420 1.18813 1.01574 0.72443 0.73560 0.73398 1.53383 1.28113 1.42296 1.68273 1.93530 1.73723 1.41502 1.86633 1.93656 1.84025 1.62503 1.53905 0.90525 0.92436 0.91801 0.89812 0.87192 0.85031 0.85017 0.76009 0.78092 0.96594 0.89017 0.95531 0.92543 0.81596 0.74935 0.74994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 9.77 37.16 0.36 -0.81 16 2 C -0.13 -1.16 5.49 -27.88 -0.15 -1.31 16 3 C -0.01 -0.06 5.13 -104.59 -0.54 -0.59 16 4 C -0.12 -1.20 9.67 -39.61 -0.38 -1.58 16 5 C -0.09 -1.02 9.97 -39.40 -0.39 -1.42 16 6 C 0.16 2.26 6.30 -83.69 -0.53 1.73 16 7 N -0.70 -10.26 5.34 -14.22 -0.08 -10.34 16 8 C 0.69 13.72 8.37 -86.92 -0.73 12.99 16 9 O -0.58 -13.78 13.45 5.28 0.07 -13.71 16 10 N -0.72 -14.54 5.07 -59.82 -0.30 -14.85 16 11 C 0.28 7.03 2.56 -69.09 -0.18 6.85 16 12 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 13 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 14 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 15 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -24.73 11.32 55.43 0.63 -24.10 16 18 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.02 -0.29 8.19 -39.39 -0.32 -0.62 16 23 C -0.66 -8.71 5.90 -39.61 -0.23 -8.94 16 24 S 2.70 33.82 5.61 -107.50 -0.60 33.22 16 25 N -1.24 -9.60 7.02 60.35 0.42 -9.18 16 26 O -0.96 -13.11 15.37 -57.17 -0.88 -13.98 16 27 O -0.95 -16.45 16.97 -57.17 -0.97 -17.42 16 28 H 0.08 0.47 3.87 -51.93 -0.20 0.26 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 32 H 0.11 1.07 5.04 -51.93 -0.26 0.81 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.40 4.40 8.84 -40.82 -0.36 4.03 16 36 H 0.39 6.60 8.56 -40.82 -0.35 6.25 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.17 3.21 5.51 -52.49 -0.29 2.92 16 42 H 0.42 2.13 8.96 -34.47 -0.31 1.82 16 43 H 0.42 2.62 7.74 -34.47 -0.27 2.35 16 LS Contribution 360.61 15.07 5.43 5.43 Total: -1.00 -36.23 360.61 -9.68 -45.91 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -5.24 Total: 13.15 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -3.14 Total: -9.63 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.67 Total: -58.47 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.78 Total: -45.12 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 33.82 SS G_CDS: -0.60 Total: 33.22 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.23 -9.68 -45.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160240304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.676 kcal (2) G-P(sol) polarization free energy of solvation -36.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds